Wall clock time and date at job start Tue Mar 31 2020 05:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99964 * 2 1 4 4 H 1.08998 * 110.01824 * 29.93336 * 3 2 1 5 5 C 1.54269 * 110.03253 * 268.54206 * 3 2 1 6 6 C 1.54884 * 104.19840 * 217.05402 * 5 3 2 7 7 C 1.54890 * 102.91245 * 37.85630 * 6 5 3 8 8 C 1.53878 * 110.07508 * 151.35636 * 3 2 1 9 9 H 1.09002 * 110.02902 * 238.59201 * 8 3 2 10 10 C 1.53002 * 110.02879 * 0.02562 * 8 3 2 11 11 H 1.08999 * 109.68011 * 179.26543 * 10 8 3 12 12 C 1.53297 * 109.67808 * 58.75397 * 10 8 3 13 13 O 1.42960 * 109.22220 * 187.97040 * 12 10 8 14 14 C 1.42971 * 114.16684 * 62.57891 * 13 12 10 15 15 C 1.53293 * 109.21956 * 297.42119 * 14 13 12 16 16 N 1.47146 * 109.68583 * 299.78950 * 10 8 3 17 17 C 1.34773 * 120.98167 * 350.23016 * 16 10 8 18 18 O 1.21551 * 119.99756 * 2.36803 * 17 16 10 19 19 C 1.47883 * 120.00116 * 182.36342 * 17 16 10 20 20 C 1.39918 * 120.02687 * 30.12224 * 19 17 16 21 21 C 1.38324 * 120.36188 * 179.97438 * 20 19 17 22 22 C 1.37753 * 120.41468 * 0.02562 * 21 20 19 23 23 C 1.40753 * 120.03502 * 359.97438 * 22 21 20 24 24 C 1.41437 * 120.17625 * 180.02562 * 23 22 21 25 25 H 1.08003 * 119.99840 * 334.97570 * 24 23 22 26 26 C 1.39936 * 120.00123 * 154.97670 * 24 23 22 27 27 N 1.30821 * 120.00017 * 342.71743 * 26 24 23 28 28 Si 1.86799 * 119.99861 * 162.71592 * 26 24 23 29 29 H 1.48496 * 109.47337 * 359.97438 * 28 26 24 30 30 H 1.48505 * 109.47305 * 120.00253 * 28 26 24 31 31 H 1.48507 * 109.47186 * 239.99696 * 28 26 24 32 32 C 1.38997 * 120.02927 * 209.84204 * 19 17 16 33 33 H 1.09004 * 109.46920 * 179.97438 * 1 2 3 34 34 H 1.08991 * 109.47079 * 300.00119 * 1 2 3 35 35 H 1.09004 * 109.46965 * 60.00318 * 1 2 3 36 36 H 1.09011 * 110.48350 * 98.38025 * 5 3 2 37 37 H 1.08997 * 110.59973 * 335.79310 * 5 3 2 38 38 H 1.08996 * 110.75671 * 156.25653 * 6 5 3 39 39 H 1.08995 * 110.76025 * 279.44468 * 6 5 3 40 40 H 1.08995 * 110.48963 * 80.82705 * 7 6 5 41 41 H 1.09007 * 110.48849 * 203.46862 * 7 6 5 42 42 H 1.08995 * 109.51627 * 307.89441 * 12 10 8 43 43 H 1.09005 * 109.51553 * 67.99833 * 12 10 8 44 44 H 1.09002 * 109.50794 * 57.34674 * 14 13 12 45 45 H 1.09001 * 109.51259 * 177.44410 * 14 13 12 46 46 H 1.09004 * 109.67642 * 172.02227 * 15 14 13 47 47 H 1.08998 * 109.68108 * 292.57157 * 15 14 13 48 48 H 1.08004 * 119.81835 * 359.97438 * 20 19 17 49 49 H 1.08003 * 119.79445 * 180.02562 * 21 20 19 50 50 H 1.07995 * 119.98548 * 180.02562 * 22 21 20 51 51 H 0.97001 * 119.99924 * 180.02562 * 27 26 24 52 52 H 1.08005 * 120.20160 * 0.02562 * 32 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3512 2.0073 0.5110 5 6 2.2589 1.7732 -1.4489 6 6 3.5947 2.5532 -1.3723 7 6 4.4216 1.7248 -0.3578 8 6 3.3838 1.2720 0.6928 9 1 3.3913 1.9577 1.5402 10 6 3.6983 -0.1490 1.1647 11 1 4.6777 -0.1687 1.6428 12 6 3.6896 -1.1047 -0.0338 13 8 3.7989 -2.4504 0.4364 14 6 2.7095 -2.8728 1.2602 15 6 2.6680 -2.0076 2.5249 16 7 2.6712 -0.5926 2.1204 17 6 1.7602 0.2712 2.6106 18 8 1.7523 1.4261 2.2314 19 6 0.7703 -0.1858 3.6096 20 6 1.0974 -1.2151 4.4992 21 6 0.1770 -1.6477 5.4367 22 6 -1.0721 -1.0710 5.5055 23 6 -1.4192 -0.0343 4.6189 24 6 -2.7007 0.5603 4.6872 25 1 -3.5322 0.0058 5.0966 26 6 -2.8913 1.8671 4.2243 27 7 -1.8621 2.6550 4.0476 28 14 -4.6153 2.4863 3.8587 29 1 -5.5980 1.4085 4.1377 30 1 -4.9117 3.6614 4.7169 31 1 -4.7069 2.8812 2.4300 32 6 -0.4837 0.4106 3.6696 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8899 35 1 -0.3633 0.5138 -0.8900 36 1 1.4534 2.4279 -1.7819 37 1 2.3545 0.9174 -2.1171 38 1 4.0860 2.5744 -2.3451 39 1 3.4306 3.5651 -1.0021 40 1 4.8696 0.8599 -0.8468 41 1 5.1908 2.3443 0.1035 42 1 2.7578 -0.9869 -0.5868 43 1 4.5319 -0.8771 -0.6872 44 1 1.7740 -2.7614 0.7119 45 1 2.8466 -3.9180 1.5374 46 1 1.7616 -2.2260 3.0895 47 1 3.5434 -2.2150 3.1404 48 1 2.0738 -1.6744 4.4535 49 1 0.4393 -2.4426 6.1192 50 1 -1.7852 -1.4139 6.2405 51 1 -1.9942 3.5610 3.7271 52 1 -0.7391 1.2083 2.9876 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286593753.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:28 Heat of formation + Delta-G solvation = -49.155576 kcal Electronic energy + Delta-G solvation = -35888.416523 eV Core-core repulsion = 31626.919305 eV Total energy + Delta-G solvation = -4261.497217 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.193 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -40.94852 -38.36662 -37.94928 -36.84236 -35.74010 -34.40869 -33.67274 -31.99614 -29.96416 -29.56752 -28.36092 -27.89160 -26.55999 -25.85071 -25.46536 -23.54426 -22.96350 -21.22613 -20.85008 -20.56343 -19.65043 -18.65696 -17.51718 -16.97648 -16.22696 -16.04973 -15.61646 -15.55722 -15.22074 -15.09750 -14.99972 -14.42914 -14.25819 -14.09062 -13.92858 -13.77397 -13.27724 -13.09342 -12.88057 -12.74281 -12.56430 -12.34868 -12.09057 -11.89386 -11.69427 -11.40537 -11.38737 -11.18333 -10.99624 -10.93680 -10.82250 -10.74314 -10.71878 -10.67108 -10.44590 -10.26915 -9.97816 -9.88359 -9.66316 -9.59347 -9.25456 -9.07467 -8.34988 -7.86698 -7.58425 -7.52100 -6.83879 -4.46126 2.27858 2.74968 3.02976 3.06589 3.09229 3.41944 3.81566 3.86766 4.03072 4.12921 4.55150 4.75351 4.81310 4.94435 5.08704 5.20960 5.32540 5.38593 5.48130 5.50803 5.55758 5.62680 5.64764 5.72219 5.76910 5.81966 5.84237 5.89233 5.91541 5.93495 5.99801 6.00890 6.07790 6.11825 6.19462 6.20902 6.24851 6.30542 6.48400 6.63614 6.65592 6.70553 6.94357 6.98948 7.08009 7.17862 7.35713 7.36412 7.63726 7.66071 7.77667 7.87453 8.05952 8.14292 8.46653 8.76132 8.79223 9.01387 10.09408 Molecular weight = 359.19amu Principal moments of inertia in cm(-1) A = 0.011364 B = 0.004339 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.372124 B = 6452.124350 C = 7976.406014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.368 6.368 3 C 0.102 3.898 4 H 0.094 0.906 5 C -0.155 4.155 6 C -0.117 4.117 7 C -0.132 4.132 8 C -0.077 4.077 9 H 0.110 0.890 10 C 0.137 3.863 11 H 0.063 0.937 12 C 0.039 3.961 13 O -0.391 6.391 14 C 0.051 3.949 15 C 0.053 3.947 16 N -0.595 5.595 17 C 0.573 3.427 18 O -0.540 6.540 19 C -0.118 4.118 20 C -0.236 4.236 21 C -0.097 4.097 22 C -0.213 4.213 23 C 0.101 3.899 24 C -0.460 4.460 25 H 0.080 0.920 26 C 0.074 3.926 27 N -0.782 5.782 28 Si 0.906 3.094 29 H -0.260 1.260 30 H -0.273 1.273 31 H -0.271 1.271 32 C -0.099 4.099 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.030 0.970 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.056 0.944 45 H 0.094 0.906 46 H 0.132 0.868 47 H 0.063 0.937 48 H 0.106 0.894 49 H 0.092 0.908 50 H 0.094 0.906 51 H 0.283 0.717 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.314 -4.136 -9.070 12.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.287 6.287 3 C 0.044 3.956 4 H 0.111 0.889 5 C -0.193 4.193 6 C -0.155 4.155 7 C -0.170 4.170 8 C -0.096 4.096 9 H 0.128 0.872 10 C 0.033 3.967 11 H 0.081 0.919 12 C -0.037 4.037 13 O -0.309 6.309 14 C -0.026 4.026 15 C -0.070 4.070 16 N -0.328 5.328 17 C 0.366 3.634 18 O -0.420 6.420 19 C -0.121 4.121 20 C -0.256 4.256 21 C -0.115 4.115 22 C -0.233 4.233 23 C 0.099 3.901 24 C -0.489 4.489 25 H 0.098 0.902 26 C -0.145 4.145 27 N -0.406 5.406 28 Si 0.730 3.270 29 H -0.183 1.183 30 H -0.199 1.199 31 H -0.197 1.197 32 C -0.120 4.120 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.117 0.883 43 H 0.104 0.896 44 H 0.075 0.925 45 H 0.112 0.888 46 H 0.149 0.851 47 H 0.082 0.918 48 H 0.124 0.876 49 H 0.110 0.890 50 H 0.112 0.888 51 H 0.094 0.906 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.627 -3.559 -9.369 13.224 hybrid contribution -1.075 0.687 0.039 1.277 sum 7.551 -2.872 -9.330 12.342 Atomic orbital electron populations 1.22802 0.82273 1.01922 1.00312 1.87940 1.18739 1.27531 1.94532 1.22910 0.95049 0.85586 0.92046 0.88856 1.23055 0.97435 0.99916 0.98874 1.22315 0.95624 0.98857 0.98695 1.22673 0.97757 0.99633 0.96940 1.22376 0.92791 0.95894 0.98526 0.87248 1.21533 0.90537 0.94403 0.90219 0.91870 1.23630 1.03803 0.80980 0.95330 1.87842 1.45484 1.29364 1.68231 1.22959 0.90413 0.97971 0.91271 1.23230 1.05139 0.81230 0.97415 1.47670 1.31363 1.09030 1.44737 1.18609 0.79652 0.84906 0.80215 1.90608 1.72389 1.19177 1.59816 1.19508 0.95307 0.99256 0.98078 1.20783 0.99872 1.02501 1.02402 1.20473 0.94433 0.99036 0.97552 1.21101 0.96503 1.03714 1.02007 1.17586 0.92937 0.90498 0.89093 1.19616 0.95362 0.97861 1.36093 0.90168 1.25940 0.98852 0.96755 0.92948 1.69818 1.31920 1.07083 1.31773 0.86295 0.82436 0.79317 0.78961 1.18329 1.19880 1.19653 1.21477 0.91730 0.99581 0.99163 0.90662 0.92826 0.95109 0.92182 0.91361 0.91946 0.91534 0.91556 0.91667 0.88348 0.89560 0.92538 0.88780 0.85060 0.91843 0.87579 0.88957 0.88769 0.90595 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.33 101.05 1.04 1.42 16 2 O -0.37 -5.93 4.06 -53.43 -0.22 -6.14 16 3 C 0.10 1.60 1.69 -25.61 -0.04 1.55 16 4 H 0.09 1.78 5.95 -51.93 -0.31 1.47 16 5 C -0.15 -2.00 6.55 -25.07 -0.16 -2.16 16 6 C -0.12 -1.33 6.90 -24.74 -0.17 -1.50 16 7 C -0.13 -1.55 6.21 -24.97 -0.16 -1.71 16 8 C -0.08 -1.16 2.14 -89.39 -0.19 -1.35 16 9 H 0.11 1.95 6.27 -51.93 -0.33 1.62 16 10 C 0.14 2.07 2.85 -67.42 -0.19 1.88 16 11 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 12 C 0.04 0.54 5.45 37.31 0.20 0.75 16 13 O -0.39 -5.74 10.74 -35.23 -0.38 -6.12 16 14 C 0.05 0.69 6.99 37.31 0.26 0.95 16 15 C 0.05 0.78 4.91 -3.53 -0.02 0.77 16 16 N -0.59 -10.08 2.21 -165.83 -0.37 -10.44 16 17 C 0.57 11.65 5.12 -12.31 -0.06 11.58 16 18 O -0.54 -11.78 9.62 -12.88 -0.12 -11.90 16 19 C -0.12 -2.63 5.50 -105.04 -0.58 -3.21 16 20 C -0.24 -4.78 7.43 -38.92 -0.29 -5.07 16 21 C -0.10 -1.99 10.01 -39.73 -0.40 -2.38 16 22 C -0.21 -4.90 9.78 -38.81 -0.38 -5.28 16 23 C 0.10 2.56 5.57 -106.87 -0.60 1.97 16 24 C -0.46 -11.67 9.05 -37.73 -0.34 -12.01 16 25 H 0.08 1.95 7.90 -52.48 -0.41 1.54 16 26 C 0.07 1.80 5.15 -17.35 -0.09 1.71 16 27 N -0.78 -19.94 10.94 55.55 0.61 -19.34 16 28 Si 0.91 18.16 29.59 -169.99 -5.03 13.12 16 29 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 30 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 31 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 32 C -0.10 -2.47 7.85 -38.44 -0.30 -2.78 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.05 1.04 6.55 -51.93 -0.34 0.70 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 37 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.72 5.81 -51.93 -0.30 0.41 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.10 1.49 4.83 -52.56 -0.25 1.23 16 43 H 0.09 1.06 6.38 -51.93 -0.33 0.73 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.13 2.09 4.09 -51.93 -0.21 1.88 16 47 H 0.06 0.88 7.99 -51.93 -0.42 0.47 16 48 H 0.11 1.87 5.24 -52.48 -0.27 1.60 16 49 H 0.09 1.62 8.06 -52.48 -0.42 1.19 16 50 H 0.09 2.03 8.06 -52.49 -0.42 1.61 16 51 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 52 H 0.13 3.42 5.50 -52.48 -0.29 3.14 16 LS Contribution 380.25 15.07 5.73 5.73 Total: -1.00 -27.03 380.25 -9.91 -36.94 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -7.67 Total: 13.02 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -2.46 Total: -14.86 kcal Atomic # 7 Polarization: -30.02 SS G_CDS: 0.24 Total: -29.78 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.72 Total: -24.17 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.03 -9.91 -36.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286593753.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.218 kcal (2) G-P(sol) polarization free energy of solvation -27.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds