Wall clock time and date at job start Tue Mar 31 2020 05:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 113.99964 * 2 1 4 4 H 1.08998 * 110.01824 * 29.93336 * 3 2 1 5 5 C 1.54269 * 110.03253 * 268.54206 * 3 2 1 6 6 C 1.54884 * 104.19840 * 217.05402 * 5 3 2 7 7 C 1.54890 * 102.91245 * 37.85630 * 6 5 3 8 8 C 1.53878 * 110.07508 * 151.35636 * 3 2 1 9 9 H 1.09002 * 110.02902 * 238.59201 * 8 3 2 10 10 C 1.53002 * 110.02879 * 0.02562 * 8 3 2 11 11 H 1.08999 * 109.68011 * 179.26543 * 10 8 3 12 12 C 1.53297 * 109.67808 * 58.75397 * 10 8 3 13 13 O 1.42960 * 109.22220 * 187.97040 * 12 10 8 14 14 C 1.42971 * 114.16684 * 62.57891 * 13 12 10 15 15 C 1.53293 * 109.21956 * 297.42119 * 14 13 12 16 16 N 1.47146 * 109.68583 * 299.78950 * 10 8 3 17 17 C 1.34773 * 120.98167 * 350.23016 * 16 10 8 18 18 O 1.21551 * 119.99756 * 2.36803 * 17 16 10 19 19 C 1.47883 * 120.00116 * 182.36342 * 17 16 10 20 20 C 1.39918 * 120.02687 * 30.12224 * 19 17 16 21 21 C 1.38324 * 120.36188 * 179.97438 * 20 19 17 22 22 C 1.37753 * 120.41468 * 0.02562 * 21 20 19 23 23 C 1.40753 * 120.03502 * 359.97438 * 22 21 20 24 24 C 1.41437 * 120.17625 * 180.02562 * 23 22 21 25 25 H 1.08003 * 119.99840 * 334.97570 * 24 23 22 26 26 C 1.39936 * 120.00123 * 154.97670 * 24 23 22 27 27 N 1.30821 * 120.00017 * 342.71743 * 26 24 23 28 28 Si 1.86799 * 119.99861 * 162.71592 * 26 24 23 29 29 H 1.48496 * 109.47337 * 359.97438 * 28 26 24 30 30 H 1.48505 * 109.47305 * 120.00253 * 28 26 24 31 31 H 1.48507 * 109.47186 * 239.99696 * 28 26 24 32 32 C 1.38997 * 120.02927 * 209.84204 * 19 17 16 33 33 H 1.09004 * 109.46920 * 179.97438 * 1 2 3 34 34 H 1.08991 * 109.47079 * 300.00119 * 1 2 3 35 35 H 1.09004 * 109.46965 * 60.00318 * 1 2 3 36 36 H 1.09011 * 110.48350 * 98.38025 * 5 3 2 37 37 H 1.08997 * 110.59973 * 335.79310 * 5 3 2 38 38 H 1.08996 * 110.75671 * 156.25653 * 6 5 3 39 39 H 1.08995 * 110.76025 * 279.44468 * 6 5 3 40 40 H 1.08995 * 110.48963 * 80.82705 * 7 6 5 41 41 H 1.09007 * 110.48849 * 203.46862 * 7 6 5 42 42 H 1.08995 * 109.51627 * 307.89441 * 12 10 8 43 43 H 1.09005 * 109.51553 * 67.99833 * 12 10 8 44 44 H 1.09002 * 109.50794 * 57.34674 * 14 13 12 45 45 H 1.09001 * 109.51259 * 177.44410 * 14 13 12 46 46 H 1.09004 * 109.67642 * 172.02227 * 15 14 13 47 47 H 1.08998 * 109.68108 * 292.57157 * 15 14 13 48 48 H 1.08004 * 119.81835 * 359.97438 * 20 19 17 49 49 H 1.08003 * 119.79445 * 180.02562 * 21 20 19 50 50 H 1.07995 * 119.98548 * 180.02562 * 22 21 20 51 51 H 0.97001 * 119.99924 * 180.02562 * 27 26 24 52 52 H 1.08005 * 120.20160 * 0.02562 * 32 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3512 2.0073 0.5110 5 6 2.2589 1.7732 -1.4489 6 6 3.5947 2.5532 -1.3723 7 6 4.4216 1.7248 -0.3578 8 6 3.3838 1.2720 0.6928 9 1 3.3913 1.9577 1.5402 10 6 3.6983 -0.1490 1.1647 11 1 4.6777 -0.1687 1.6428 12 6 3.6896 -1.1047 -0.0338 13 8 3.7989 -2.4504 0.4364 14 6 2.7095 -2.8728 1.2602 15 6 2.6680 -2.0076 2.5249 16 7 2.6712 -0.5926 2.1204 17 6 1.7602 0.2712 2.6106 18 8 1.7523 1.4261 2.2314 19 6 0.7703 -0.1858 3.6096 20 6 1.0974 -1.2151 4.4992 21 6 0.1770 -1.6477 5.4367 22 6 -1.0721 -1.0710 5.5055 23 6 -1.4192 -0.0343 4.6189 24 6 -2.7007 0.5603 4.6872 25 1 -3.5322 0.0058 5.0966 26 6 -2.8913 1.8671 4.2243 27 7 -1.8621 2.6550 4.0476 28 14 -4.6153 2.4863 3.8587 29 1 -5.5980 1.4085 4.1377 30 1 -4.9117 3.6614 4.7169 31 1 -4.7069 2.8812 2.4300 32 6 -0.4837 0.4106 3.6696 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8899 35 1 -0.3633 0.5138 -0.8900 36 1 1.4534 2.4279 -1.7819 37 1 2.3545 0.9174 -2.1171 38 1 4.0860 2.5744 -2.3451 39 1 3.4306 3.5651 -1.0021 40 1 4.8696 0.8599 -0.8468 41 1 5.1908 2.3443 0.1035 42 1 2.7578 -0.9869 -0.5868 43 1 4.5319 -0.8771 -0.6872 44 1 1.7740 -2.7614 0.7119 45 1 2.8466 -3.9180 1.5374 46 1 1.7616 -2.2260 3.0895 47 1 3.5434 -2.2150 3.1404 48 1 2.0738 -1.6744 4.4535 49 1 0.4393 -2.4426 6.1192 50 1 -1.7852 -1.4139 6.2405 51 1 -1.9942 3.5610 3.7271 52 1 -0.7391 1.2083 2.9876 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286593753.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:27 Heat of formation + Delta-G solvation = -62.176419 kcal Electronic energy + Delta-G solvation = -35888.981149 eV Core-core repulsion = 31626.919305 eV Total energy + Delta-G solvation = -4262.061843 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.193 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -42.28357 -39.85648 -39.18345 -38.46698 -36.93534 -35.93054 -35.30968 -33.25893 -31.60891 -31.31412 -29.56366 -29.09083 -27.75971 -27.41185 -27.00333 -24.84068 -24.40771 -22.85398 -22.29548 -21.68561 -20.97334 -20.14527 -19.14899 -18.22813 -17.65995 -17.52860 -17.01670 -16.90044 -16.67389 -16.59195 -16.19247 -15.77958 -15.50957 -15.40223 -15.33408 -15.17040 -14.84424 -14.47090 -14.34778 -14.22169 -14.01609 -13.67924 -13.53217 -13.21128 -13.16401 -12.91883 -12.82466 -12.57404 -12.49495 -12.35785 -12.13496 -11.99081 -11.94537 -11.88675 -11.77927 -11.58953 -11.45576 -11.37243 -11.17196 -11.06333 -10.84277 -10.36066 -9.84277 -9.40297 -9.32883 -9.14287 -8.65433 -6.37341 0.53398 1.00593 1.34349 1.43706 1.49592 2.01681 2.16545 2.22778 2.76365 2.83420 2.97974 3.65353 3.68966 3.71074 3.74260 3.96171 4.07768 4.15931 4.24618 4.30002 4.34265 4.35198 4.43720 4.45989 4.49886 4.56608 4.61533 4.66811 4.74800 4.75802 4.81925 4.83898 4.87180 4.90220 4.94639 4.97611 5.04475 5.09694 5.15167 5.22032 5.24406 5.33557 5.37025 5.47898 5.49407 5.54822 5.78631 5.87921 5.99186 6.06382 6.24353 6.30873 6.33374 6.51539 6.67864 6.89415 6.95993 7.47138 8.29448 Molecular weight = 359.19amu Principal moments of inertia in cm(-1) A = 0.011364 B = 0.004339 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.372124 B = 6452.124350 C = 7976.406014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.102 3.898 4 H 0.047 0.953 5 C -0.148 4.148 6 C -0.112 4.112 7 C -0.122 4.122 8 C -0.076 4.076 9 H 0.073 0.927 10 C 0.133 3.867 11 H 0.074 0.926 12 C 0.046 3.954 13 O -0.393 6.393 14 C 0.055 3.945 15 C 0.047 3.953 16 N -0.589 5.589 17 C 0.568 3.432 18 O -0.563 6.563 19 C -0.128 4.128 20 C -0.218 4.218 21 C -0.095 4.095 22 C -0.223 4.223 23 C 0.070 3.930 24 C -0.497 4.497 25 H 0.080 0.920 26 C 0.034 3.966 27 N -0.823 5.823 28 Si 0.976 3.024 29 H -0.252 1.252 30 H -0.267 1.267 31 H -0.269 1.269 32 C -0.124 4.124 33 H 0.085 0.915 34 H 0.012 0.988 35 H 0.045 0.955 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.113 0.887 44 H 0.045 0.955 45 H 0.126 0.874 46 H 0.121 0.879 47 H 0.084 0.916 48 H 0.141 0.859 49 H 0.134 0.866 50 H 0.103 0.897 51 H 0.284 0.716 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.520 -6.200 -10.287 15.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.044 3.956 4 H 0.065 0.935 5 C -0.186 4.186 6 C -0.150 4.150 7 C -0.160 4.160 8 C -0.095 4.095 9 H 0.092 0.908 10 C 0.030 3.970 11 H 0.092 0.908 12 C -0.030 4.030 13 O -0.312 6.312 14 C -0.022 4.022 15 C -0.075 4.075 16 N -0.322 5.322 17 C 0.360 3.640 18 O -0.445 6.445 19 C -0.131 4.131 20 C -0.237 4.237 21 C -0.112 4.112 22 C -0.243 4.243 23 C 0.068 3.932 24 C -0.526 4.526 25 H 0.098 0.902 26 C -0.181 4.181 27 N -0.448 5.448 28 Si 0.797 3.203 29 H -0.175 1.175 30 H -0.192 1.192 31 H -0.194 1.194 32 C -0.144 4.144 33 H 0.104 0.896 34 H 0.030 0.970 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.130 0.870 44 H 0.064 0.936 45 H 0.144 0.856 46 H 0.138 0.862 47 H 0.102 0.898 48 H 0.159 0.841 49 H 0.152 0.848 50 H 0.121 0.879 51 H 0.095 0.905 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.858 -5.661 -10.583 16.184 hybrid contribution -1.612 1.213 0.458 2.069 sum 9.246 -4.447 -10.125 14.415 Atomic orbital electron populations 1.22672 0.82788 1.02083 0.98979 1.87944 1.18156 1.27710 1.94595 1.22815 0.94565 0.84446 0.93756 0.93457 1.22981 0.98496 1.00461 0.96641 1.22324 0.94575 0.98091 0.99987 1.22635 0.96920 1.00540 0.95900 1.22218 0.93501 0.95388 0.98422 0.90829 1.21748 0.90085 0.94694 0.90470 0.90833 1.23596 1.04357 0.80437 0.94611 1.87850 1.45711 1.29402 1.68228 1.23014 0.89843 0.99208 0.90107 1.23357 1.05340 0.80071 0.98685 1.47681 1.30588 1.09492 1.44408 1.18411 0.80179 0.85087 0.80349 1.90654 1.73086 1.20373 1.60346 1.19842 0.94905 0.99365 0.98985 1.21227 1.01136 1.00792 1.00571 1.20896 0.93190 0.99384 0.97774 1.21358 0.97965 1.03233 1.01728 1.17927 0.93449 0.91802 0.90036 1.19851 0.95778 0.98812 1.38166 0.90196 1.26751 1.02675 0.96529 0.92156 1.69917 1.34123 1.07446 1.33345 0.85247 0.77517 0.78847 0.78704 1.17544 1.19151 1.19389 1.21267 0.93373 1.00206 0.99592 0.89632 0.96953 0.93681 0.92522 0.90118 0.89121 0.92209 0.89539 0.90548 0.89462 0.86967 0.93645 0.85629 0.86187 0.89761 0.84147 0.84820 0.87873 0.90503 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.08 10.33 113.37 1.17 2.25 16 2 O -0.36 -11.92 4.06 -131.58 -0.53 -12.45 16 3 C 0.10 3.29 1.69 31.32 0.05 3.35 16 4 H 0.05 1.98 5.95 -2.39 -0.01 1.97 16 5 C -0.15 -3.68 6.55 31.67 0.21 -3.47 16 6 C -0.11 -2.30 6.90 31.88 0.22 -2.08 16 7 C -0.12 -2.58 6.21 31.74 0.20 -2.38 16 8 C -0.08 -2.28 2.14 -10.00 -0.02 -2.30 16 9 H 0.07 2.74 6.27 -2.39 -0.01 2.72 16 10 C 0.13 3.80 2.85 44.97 0.13 3.92 16 11 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 12 C 0.05 1.15 5.45 72.08 0.39 1.54 16 13 O -0.39 -10.12 10.74 -148.98 -1.60 -11.72 16 14 C 0.06 1.33 6.99 72.08 0.50 1.83 16 15 C 0.05 1.29 4.91 86.35 0.42 1.72 16 16 N -0.59 -19.50 2.21 -796.85 -1.76 -21.25 16 17 C 0.57 23.83 5.12 86.80 0.44 24.27 16 18 O -0.56 -26.30 9.62 13.53 0.13 -26.17 16 19 C -0.13 -5.87 5.50 -20.13 -0.11 -5.98 16 20 C -0.22 -8.58 7.43 22.70 0.17 -8.41 16 21 C -0.09 -3.73 10.01 22.18 0.22 -3.51 16 22 C -0.22 -10.36 9.78 22.77 0.22 -10.13 16 23 C 0.07 3.73 5.57 -21.32 -0.12 3.61 16 24 C -0.50 -26.65 9.05 23.47 0.21 -26.44 16 25 H 0.08 4.10 7.90 -2.91 -0.02 4.07 16 26 C 0.03 1.74 5.15 85.25 0.44 2.18 16 27 N -0.82 -45.15 10.94 21.82 0.24 -44.91 16 28 Si 0.98 39.05 29.59 68.60 2.03 41.08 16 29 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 30 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 31 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 32 C -0.12 -6.59 7.85 23.01 0.18 -6.41 16 33 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.01 0.51 6.55 -2.39 -0.02 0.50 16 35 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.08 1.83 8.08 -2.39 -0.02 1.81 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 1.50 5.81 -2.39 -0.01 1.49 16 41 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.09 2.43 4.83 -12.39 -0.06 2.37 16 43 H 0.11 2.24 6.38 -2.38 -0.02 2.23 16 44 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.12 3.55 4.09 -2.39 -0.01 3.54 16 47 H 0.08 2.00 7.99 -2.39 -0.02 1.98 16 48 H 0.14 4.53 5.24 -2.91 -0.02 4.51 16 49 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 50 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 51 H 0.28 14.43 8.30 -92.71 -0.77 13.66 16 52 H 0.10 5.78 5.50 -2.91 -0.02 5.77 16 Total: -1.00 -64.35 380.25 4.34 -60.01 By element: Atomic # 1 Polarization: 40.97 SS G_CDS: 0.89 Total: 41.86 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 4.94 Total: -26.44 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -1.52 Total: -66.16 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -2.00 Total: -50.35 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -64.35 4.34 -60.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286593753.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.163 kcal (2) G-P(sol) polarization free energy of solvation -64.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds