Wall clock time and date at job start Tue Mar 31 2020 06:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99907 * 2 1 4 4 C 1.53004 * 109.46764 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47061 * 65.00147 * 4 3 2 6 6 C 1.46499 * 119.99996 * 274.99530 * 5 4 3 7 7 C 1.50686 * 109.47197 * 280.46977 * 6 5 4 8 8 H 1.08002 * 120.00227 * 4.68463 * 7 6 5 9 9 C 1.37881 * 120.00254 * 184.68173 * 7 6 5 10 10 N 1.31514 * 120.00064 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99702 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47252 * 89.99616 * 11 9 7 13 13 H 1.48496 * 109.46927 * 209.99943 * 11 9 7 14 14 H 1.48498 * 109.46881 * 329.99349 * 11 9 7 15 15 S 1.65597 * 119.99965 * 94.99457 * 5 4 3 16 16 O 1.42103 * 106.40650 * 339.92442 * 15 5 4 17 17 O 1.42096 * 106.40469 * 207.00267 * 15 5 4 18 18 N 1.65610 * 107.21559 * 93.46238 * 15 5 4 19 19 C 1.48213 * 126.43710 * 277.08047 * 18 15 5 20 20 H 1.08994 * 109.92170 * 55.36798 * 19 18 15 21 21 C 1.53004 * 109.92266 * 294.25408 * 19 18 15 22 22 C 1.55338 * 107.02637 * 174.91514 * 19 18 15 23 23 C 1.53669 * 101.78286 * 337.53585 * 22 19 18 24 24 H 1.09002 * 111.10840 * 281.48877 * 23 22 19 25 25 C 1.51928 * 115.22773 * 153.34084 * 23 22 19 26 26 C 1.53835 * 107.01443 * 184.60245 * 25 23 22 27 27 C 1.52573 * 111.31913 * 58.49238 * 26 25 23 28 28 C 1.53781 * 111.36878 * 304.85035 * 27 26 25 29 29 C 1.45380 * 126.44103 * 96.77124 * 18 15 5 30 30 H 1.09001 * 109.21060 * 94.15038 * 29 18 15 31 31 H 1.08997 * 109.46935 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46863 * 300.00023 * 1 2 3 33 33 H 1.09002 * 109.47156 * 60.00181 * 1 2 3 34 34 H 1.08998 * 109.46954 * 60.00340 * 3 2 1 35 35 H 1.08998 * 109.46652 * 299.99847 * 3 2 1 36 36 H 1.08994 * 109.47039 * 305.00184 * 4 3 2 37 37 H 1.09001 * 109.46837 * 184.99791 * 4 3 2 38 38 H 1.09003 * 109.46600 * 40.47152 * 6 5 4 39 39 H 1.09001 * 109.47015 * 160.46546 * 6 5 4 40 40 H 0.97003 * 119.99505 * 180.02562 * 10 9 7 41 41 H 1.09001 * 109.46635 * 65.68150 * 21 19 18 42 42 H 1.09000 * 109.46670 * 185.67521 * 21 19 18 43 43 H 1.08998 * 109.47311 * 305.67844 * 21 19 18 44 44 H 1.08996 * 110.97048 * 95.65734 * 22 19 18 45 45 H 1.09001 * 110.96649 * 219.41394 * 22 19 18 46 46 H 1.08993 * 109.89156 * 304.61229 * 25 23 22 47 47 H 1.09001 * 109.88876 * 65.72323 * 25 23 22 48 48 H 1.09003 * 109.40928 * 297.86756 * 26 25 23 49 49 H 1.09003 * 108.87557 * 178.76211 * 26 25 23 50 50 H 1.08998 * 109.10472 * 184.36396 * 27 26 25 51 51 H 1.09000 * 109.10217 * 65.33749 * 27 26 25 52 52 H 1.09003 * 109.87766 * 297.81163 * 28 27 26 53 53 H 1.09000 * 109.88119 * 176.73919 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0015 -0.8955 -1.3758 7 6 5.2374 -1.4362 -0.7043 8 1 5.8954 -0.7695 -0.1667 9 6 5.5282 -2.7821 -0.7760 10 7 6.6071 -3.2538 -0.1903 11 14 4.3904 -3.9351 -1.7063 12 1 4.8228 -4.0196 -3.1244 13 1 4.4436 -5.2857 -1.0912 14 1 3.0003 -3.4167 -1.6425 15 16 4.4473 1.5121 -2.5244 16 8 3.8859 2.7975 -2.2968 17 8 4.2020 0.7542 -3.7011 18 7 6.0900 1.6940 -2.4193 19 6 6.8150 2.6749 -1.5773 20 1 6.5103 2.5677 -0.5363 21 6 6.5216 4.0960 -2.0626 22 6 8.3306 2.3680 -1.7240 23 6 8.3112 0.8986 -2.1735 24 1 8.1369 0.2320 -1.3288 25 6 9.5100 0.4570 -2.9957 26 6 9.2431 -0.9919 -3.4384 27 6 7.9545 -1.0958 -4.2488 28 6 6.7576 -0.5188 -3.4746 29 6 7.0922 0.9174 -3.1307 30 1 7.3680 1.4407 -4.0463 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6886 1.8464 0.8900 35 1 1.6886 1.8463 -0.8900 36 1 3.8507 0.5685 0.8426 37 1 3.9785 2.1765 0.0902 38 1 3.1157 -1.3160 -0.8996 39 1 4.0116 -1.1698 -2.4307 40 1 6.8118 -4.2006 -0.2411 41 1 5.4676 4.3239 -1.9032 42 1 7.1348 4.8041 -1.5051 43 1 6.7533 4.1723 -3.1249 44 1 8.7853 3.0025 -2.4847 45 1 8.8449 2.4769 -0.7691 46 1 9.6239 1.1064 -3.8636 47 1 10.4118 0.4915 -2.3845 48 1 9.1631 -1.6306 -2.5587 49 1 10.0776 -1.3328 -4.0512 50 1 7.7600 -2.1438 -4.4767 51 1 8.0745 -0.5454 -5.1819 52 1 6.5966 -1.0909 -2.5609 53 1 5.8630 -0.5523 -4.0964 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330371969.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:42 Heat of formation + Delta-G solvation = -147.336299 kcal Electronic energy + Delta-G solvation = -34893.326947 eV Core-core repulsion = 30697.590334 eV Total energy + Delta-G solvation = -4195.736613 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.192 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.97209 -39.12875 -38.42038 -37.04490 -36.89183 -36.66347 -34.51494 -33.05071 -31.45145 -31.33527 -29.80877 -28.81087 -27.03349 -26.81074 -24.29493 -23.52184 -23.03926 -22.33795 -21.95503 -20.89673 -19.65255 -18.94950 -18.62988 -18.04315 -17.55471 -17.09946 -16.94402 -16.45093 -16.08650 -15.76502 -15.59697 -15.40432 -15.23871 -15.11432 -14.78091 -14.48118 -14.15325 -14.06765 -13.78173 -13.73831 -13.47643 -13.43406 -13.38885 -13.26524 -13.09694 -13.03047 -12.74847 -12.67040 -12.64051 -12.52355 -12.40524 -12.17462 -12.06680 -11.93573 -11.87975 -11.64289 -11.61645 -11.54312 -11.30051 -11.08534 -10.68546 -10.63377 -10.56516 -9.91283 -9.64629 -8.21042 -6.17474 -0.33849 1.32389 1.37095 1.45867 1.94035 2.37474 2.52588 2.92547 3.15165 3.26846 3.48245 3.83277 3.86828 3.97680 4.10816 4.15807 4.18302 4.28621 4.34509 4.41065 4.44122 4.47312 4.52024 4.54811 4.56830 4.63028 4.68341 4.72205 4.75459 4.82679 4.83036 4.89751 4.96574 5.02023 5.04220 5.12853 5.16521 5.20463 5.29061 5.34057 5.38059 5.41603 5.48984 5.51644 5.53080 5.58771 5.64644 5.65612 5.81351 5.91884 6.33339 6.41008 6.81870 7.41905 8.92955 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.008854 B = 0.006455 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.744922 B = 4336.615298 C = 6401.217060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.409 6.409 3 C 0.044 3.956 4 C 0.127 3.873 5 N -0.986 5.986 6 C 0.231 3.769 7 C -0.503 4.503 8 H 0.057 0.943 9 C 0.041 3.959 10 N -0.925 5.925 11 Si 0.895 3.105 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.257 1.257 15 S 2.801 3.199 16 O -0.994 6.994 17 O -1.009 7.009 18 N -1.003 6.003 19 C 0.142 3.858 20 H 0.071 0.929 21 C -0.169 4.169 22 C -0.103 4.103 23 C -0.097 4.097 24 H 0.059 0.941 25 C -0.094 4.094 26 C -0.117 4.117 27 C -0.104 4.104 28 C -0.168 4.168 29 C 0.158 3.842 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.042 0.958 39 H 0.020 0.980 40 H 0.263 0.737 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.058 0.942 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.038 0.962 49 H 0.078 0.922 50 H 0.047 0.953 51 H 0.073 0.927 52 H 0.084 0.916 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 12.762 -1.945 13.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.328 6.328 3 C -0.034 4.034 4 C 0.001 3.999 5 N -0.825 5.825 6 C 0.106 3.894 7 C -0.543 4.543 8 H 0.075 0.925 9 C -0.158 4.158 10 N -0.565 5.565 11 Si 0.721 3.279 12 H -0.199 1.199 13 H -0.207 1.207 14 H -0.181 1.181 15 S 2.812 3.188 16 O -0.979 6.979 17 O -0.994 6.994 18 N -0.843 5.843 19 C 0.037 3.963 20 H 0.089 0.911 21 C -0.228 4.228 22 C -0.142 4.142 23 C -0.117 4.117 24 H 0.078 0.922 25 C -0.132 4.132 26 C -0.154 4.154 27 C -0.142 4.142 28 C -0.207 4.207 29 C 0.052 3.948 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.060 0.940 39 H 0.038 0.962 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.113 0.887 43 H 0.077 0.923 44 H 0.116 0.884 45 H 0.112 0.888 46 H 0.103 0.897 47 H 0.098 0.902 48 H 0.057 0.943 49 H 0.097 0.903 50 H 0.066 0.934 51 H 0.092 0.908 52 H 0.102 0.898 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.052 12.802 -2.597 13.105 hybrid contribution -0.847 -1.397 -0.025 1.634 sum 0.205 11.405 -2.622 11.704 Atomic orbital electron populations 1.22914 0.80294 1.03325 1.00782 1.88009 1.20896 1.28451 1.95485 1.23146 0.94177 0.84771 1.01309 1.21360 0.92671 0.98621 0.87271 1.57478 1.79285 1.16902 1.28811 1.19246 0.97491 0.76547 0.96105 1.21333 1.07193 0.93179 1.32574 0.92461 1.25237 0.95657 0.99070 0.95865 1.69971 1.26641 1.14358 1.45505 0.86495 0.81801 0.79734 0.79849 1.19910 1.20736 1.18099 1.01091 0.72450 0.72204 0.73008 1.93502 1.77388 1.40319 1.86646 1.93492 1.84940 1.72900 1.48078 1.58725 1.22378 1.45903 1.57270 1.21938 0.93244 0.87756 0.93384 0.91086 1.22355 1.03044 0.95165 1.02187 1.22569 0.93093 0.95043 1.03481 1.22140 0.94969 0.97195 0.97429 0.92239 1.21395 0.96731 0.95384 0.99644 1.21541 0.96802 0.97644 0.99443 1.21384 0.94064 1.00093 0.98666 1.22159 0.99029 0.96487 1.02982 1.20915 0.87893 0.91092 0.94917 0.91243 0.89428 0.92110 0.93984 0.89436 0.93915 0.89815 0.87699 0.93978 0.96169 0.92792 0.92321 0.88656 0.92256 0.88375 0.88849 0.89701 0.90202 0.94294 0.90301 0.93398 0.90845 0.89769 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 11.01 113.37 1.25 1.84 16 2 O -0.41 -14.31 8.99 -148.98 -1.34 -15.65 16 3 C 0.04 1.36 6.28 71.98 0.45 1.81 16 4 C 0.13 4.33 5.76 86.38 0.50 4.83 16 5 N -0.99 -40.59 2.83 -519.86 -1.47 -42.06 16 6 C 0.23 11.12 4.40 85.63 0.38 11.50 16 7 C -0.50 -26.45 7.59 25.60 0.19 -26.25 16 8 H 0.06 3.23 8.06 -2.91 -0.02 3.21 16 9 C 0.04 2.28 5.17 84.66 0.44 2.71 16 10 N -0.92 -53.36 13.96 21.45 0.30 -53.06 16 11 Si 0.90 43.79 27.38 68.60 1.88 45.66 16 12 H -0.27 -13.31 7.11 99.48 0.71 -12.61 16 13 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 14 H -0.26 -12.28 6.68 99.48 0.66 -11.62 16 15 S 2.80 112.57 6.10 -56.49 -0.34 112.23 16 16 O -0.99 -38.62 14.65 -128.00 -1.88 -40.50 16 17 O -1.01 -47.00 14.05 -128.00 -1.80 -48.80 16 18 N -1.00 -34.80 3.39 -464.88 -1.57 -36.38 16 19 C 0.14 3.83 3.72 45.47 0.17 4.00 16 20 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 21 C -0.17 -3.92 9.05 71.98 0.65 -3.26 16 22 C -0.10 -2.31 6.07 31.62 0.19 -2.12 16 23 C -0.10 -2.85 2.61 -10.23 -0.03 -2.88 16 24 H 0.06 2.24 8.12 -2.39 -0.02 2.23 16 25 C -0.09 -2.26 5.62 30.52 0.17 -2.09 16 26 C -0.12 -3.39 5.84 30.73 0.18 -3.21 16 27 C -0.10 -3.44 5.83 30.72 0.18 -3.26 16 28 C -0.17 -6.79 5.27 30.34 0.16 -6.63 16 29 C 0.16 5.38 2.46 45.37 0.11 5.49 16 30 H 0.07 2.13 7.86 -2.39 -0.02 2.11 16 31 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 3.01 8.07 -2.39 -0.02 2.99 16 37 H 0.11 3.02 7.51 -2.39 -0.02 3.00 16 38 H 0.04 2.10 5.95 -2.39 -0.01 2.09 16 39 H 0.02 1.05 6.07 -2.39 -0.01 1.03 16 40 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 41 H 0.06 1.59 6.33 -2.39 -0.02 1.58 16 42 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.10 1.73 7.87 -2.39 -0.02 1.71 16 45 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.08 1.68 7.98 -2.39 -0.02 1.66 16 47 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 50 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 51 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 52 H 0.08 4.03 5.26 -2.39 -0.01 4.02 16 53 H 0.06 2.51 6.09 -2.39 -0.01 2.49 16 Total: -1.00 -68.05 406.38 -0.40 -68.45 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.83 Total: 27.62 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 4.99 Total: -17.53 kcal Atomic # 7 Polarization: -128.76 SS G_CDS: -2.75 Total: -131.50 kcal Atomic # 8 Polarization: -99.93 SS G_CDS: -5.01 Total: -104.94 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.66 kcal Atomic # 16 Polarization: 112.57 SS G_CDS: -0.34 Total: 112.23 kcal Total: -68.05 -0.40 -68.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330371969.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.882 kcal (2) G-P(sol) polarization free energy of solvation -68.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds