Wall clock time and date at job start Tue Mar 31 2020 06:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47019 * 2 1 4 4 C 1.46509 * 119.99638 * 264.78430 * 3 2 1 5 5 C 1.53003 * 109.47095 * 89.99682 * 4 3 2 6 6 C 1.34774 * 120.00699 * 84.77946 * 3 2 1 7 7 O 1.21277 * 120.00458 * 184.97927 * 6 3 2 8 8 C 1.50707 * 119.99519 * 4.98537 * 6 3 2 9 9 H 1.08999 * 109.87394 * 328.03538 * 8 6 3 10 10 C 1.54325 * 109.87976 * 89.04945 * 8 6 3 11 11 C 1.55552 * 102.75987 * 97.25558 * 10 8 6 12 12 C 1.54905 * 101.59718 * 35.53087 * 11 10 8 13 13 N 1.47018 * 109.88203 * 207.01751 * 8 6 3 14 14 S 1.65598 * 125.65007 * 59.48532 * 13 8 6 15 15 O 1.42092 * 104.27879 * 206.07081 * 14 13 8 16 16 O 1.42107 * 104.27660 * 333.93425 * 14 13 8 17 17 C 1.81407 * 104.44664 * 90.00027 * 14 13 8 18 18 C 1.52995 * 109.47032 * 180.02562 * 17 14 13 19 19 C 1.53002 * 109.47208 * 300.00150 * 18 17 14 20 20 C 1.53001 * 109.47142 * 60.00173 * 18 17 14 21 21 C 1.50703 * 109.47127 * 180.02562 * 18 17 14 22 22 H 1.07998 * 119.99882 * 0.02562 * 21 18 17 23 23 C 1.37875 * 119.99948 * 180.02562 * 21 18 17 24 24 N 1.31512 * 120.00359 * 359.97438 * 23 21 18 25 25 Si 1.86803 * 119.99782 * 179.97438 * 23 21 18 26 26 H 1.48502 * 109.46831 * 60.00137 * 25 23 21 27 27 H 1.48499 * 109.46927 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47430 * 299.99992 * 25 23 21 29 29 H 1.08998 * 109.46967 * 300.00016 * 1 2 3 30 30 H 1.09006 * 109.46737 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47252 * 60.00508 * 1 2 3 32 32 H 1.08998 * 109.47252 * 119.99492 * 2 1 3 33 33 H 1.08995 * 109.47444 * 239.99815 * 2 1 3 34 34 H 1.08998 * 109.46958 * 209.99993 * 4 3 2 35 35 H 1.08997 * 109.46983 * 329.99591 * 4 3 2 36 36 H 1.08991 * 109.47128 * 300.00189 * 5 4 3 37 37 H 1.09008 * 109.46829 * 59.99969 * 5 4 3 38 38 H 1.08997 * 109.46926 * 179.97438 * 5 4 3 39 39 H 1.09004 * 110.71701 * 215.58605 * 10 8 6 40 40 H 1.09003 * 110.72353 * 338.86090 * 10 8 6 41 41 H 1.08997 * 111.02547 * 277.43479 * 11 10 8 42 42 H 1.08997 * 110.96457 * 153.59681 * 11 10 8 43 43 H 1.09002 * 110.36766 * 204.11701 * 12 11 10 44 44 H 1.09003 * 110.37136 * 81.79353 * 12 11 10 45 45 H 1.09003 * 109.47200 * 300.00207 * 17 14 13 46 46 H 1.08996 * 109.47012 * 60.00444 * 17 14 13 47 47 H 1.08995 * 109.46977 * 60.00315 * 19 18 17 48 48 H 1.08999 * 109.47292 * 180.02562 * 19 18 17 49 49 H 1.09001 * 109.46753 * 299.99823 * 19 18 17 50 50 H 1.08997 * 109.47085 * 60.00347 * 20 18 17 51 51 H 1.08999 * 109.47006 * 180.02562 * 20 18 17 52 52 H 1.08995 * 109.47422 * 299.99917 * 20 18 17 53 53 H 0.97001 * 120.00493 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3712 2.0334 -1.2636 5 6 1.1396 2.7391 -1.8346 6 6 2.1429 2.0521 1.1623 7 8 2.4602 3.2226 1.1559 8 6 1.8879 1.3476 2.4699 9 1 1.1242 0.5815 2.3353 10 6 3.1932 0.7031 2.9820 11 6 3.7224 1.7577 3.9957 12 6 2.4029 2.2909 4.6076 13 7 1.4494 2.3181 3.4835 14 16 0.1075 3.2827 3.3793 15 8 0.4185 4.4049 4.1935 16 8 -0.1115 3.4289 1.9829 17 6 -1.2173 2.2980 4.1317 18 6 -2.5255 3.0904 4.0948 19 6 -2.3537 4.3952 4.8753 20 6 -2.8883 3.4086 2.6429 21 6 -3.6260 2.2726 4.7205 22 1 -3.4133 1.2865 5.1062 23 6 -4.9041 2.7833 4.8004 24 7 -5.1630 3.9843 4.3311 25 14 -6.2683 1.7693 5.5752 26 1 -5.9163 1.4610 6.9846 27 1 -7.5381 2.5385 5.5395 28 1 -6.4348 0.5027 4.8181 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.1599 2.7647 -1.0871 35 1 2.7224 1.2844 -1.9733 36 1 0.3510 2.0078 -2.0110 37 1 0.7884 3.4882 -1.1248 38 1 1.4023 3.2247 -2.7745 39 1 2.9859 -0.2433 3.4815 40 1 3.9004 0.5623 2.1646 41 1 4.2656 2.5528 3.4850 42 1 4.3447 1.2884 4.7575 43 1 2.5481 3.2949 5.0063 44 1 2.0485 1.6190 5.3894 45 1 -1.3400 1.3687 3.5755 46 1 -0.9587 2.0710 5.1660 47 1 -1.5578 4.9868 4.4231 48 1 -3.2859 4.9595 4.8494 49 1 -2.0953 4.1684 5.9096 50 1 -3.0108 2.4791 2.0870 51 1 -3.8201 3.9735 2.6167 52 1 -2.0924 4.0002 2.1908 53 1 -6.0621 4.3438 4.3877 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331316021.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:53 Heat of formation + Delta-G solvation = -123.469426 kcal Electronic energy + Delta-G solvation = -34144.719735 eV Core-core repulsion = 29950.018068 eV Total energy + Delta-G solvation = -4194.701667 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.192 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.44378 -38.76449 -38.18145 -38.12583 -37.11199 -36.86236 -33.66317 -33.08609 -31.97857 -30.97096 -29.85656 -28.40180 -27.77079 -27.27871 -25.21296 -24.07524 -23.36060 -22.40772 -21.35996 -20.75071 -19.45454 -18.88343 -18.39464 -17.93135 -17.41674 -16.91484 -16.74329 -16.67306 -16.31894 -15.72584 -15.25728 -15.01168 -14.83594 -14.73644 -14.69741 -14.48641 -14.44575 -14.25640 -13.95911 -13.90218 -13.75391 -13.32863 -13.25972 -13.07891 -13.05941 -12.86671 -12.82048 -12.62841 -12.57622 -12.48001 -12.30268 -12.27501 -12.22704 -12.15084 -12.09296 -12.00160 -11.89417 -11.63493 -11.62074 -11.42686 -10.92142 -10.64913 -10.43800 -9.89026 -9.65088 -8.04462 -6.24323 -0.74057 1.45324 1.46057 1.53558 1.56680 1.80705 2.09997 2.43553 2.94512 3.07094 3.18283 3.48910 3.52400 3.70307 3.94817 3.97423 4.09435 4.13347 4.19453 4.25070 4.26133 4.47040 4.51513 4.52238 4.57185 4.59873 4.70522 4.76589 4.78059 4.79143 4.84380 4.86058 4.90109 4.92301 4.94925 4.98135 5.01408 5.06262 5.09510 5.28908 5.30491 5.32079 5.40951 5.46305 5.47929 5.60838 5.72913 5.88620 6.05293 6.29147 6.44088 6.80115 7.25905 7.44303 8.95723 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.012521 B = 0.003797 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.751736 B = 7373.113602 C = 8118.793381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.097 3.903 3 N -0.612 5.612 4 C 0.114 3.886 5 C -0.167 4.167 6 C 0.499 3.501 7 O -0.572 6.572 8 C 0.119 3.881 9 H 0.115 0.885 10 C -0.104 4.104 11 C -0.121 4.121 12 C 0.099 3.901 13 N -1.002 6.002 14 S 2.614 3.386 15 O -0.996 6.996 16 O -0.975 6.975 17 C -0.580 4.580 18 C 0.072 3.928 19 C -0.160 4.160 20 C -0.154 4.154 21 C -0.517 4.517 22 H 0.067 0.933 23 C 0.017 3.983 24 N -0.910 5.910 25 Si 0.958 3.042 26 H -0.270 1.270 27 H -0.289 1.289 28 H -0.268 1.268 29 H 0.032 0.968 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.060 0.940 35 H 0.118 0.882 36 H 0.063 0.937 37 H 0.017 0.983 38 H 0.078 0.922 39 H 0.130 0.870 40 H 0.095 0.905 41 H 0.055 0.945 42 H 0.125 0.875 43 H 0.062 0.938 44 H 0.102 0.898 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.023 0.977 48 H 0.072 0.928 49 H 0.041 0.959 50 H 0.041 0.959 51 H 0.070 0.930 52 H 0.024 0.976 53 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.533 -16.044 -6.451 25.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.024 4.024 3 N -0.345 5.345 4 C -0.009 4.009 5 C -0.225 4.225 6 C 0.287 3.713 7 O -0.451 6.451 8 C 0.010 3.990 9 H 0.133 0.867 10 C -0.143 4.143 11 C -0.160 4.160 12 C -0.025 4.025 13 N -0.840 5.840 14 S 2.714 3.286 15 O -0.986 6.986 16 O -0.965 6.965 17 C -0.713 4.713 18 C 0.070 3.930 19 C -0.217 4.217 20 C -0.212 4.212 21 C -0.556 4.556 22 H 0.086 0.914 23 C -0.183 4.183 24 N -0.549 5.549 25 Si 0.784 3.216 26 H -0.195 1.195 27 H -0.214 1.214 28 H -0.193 1.193 29 H 0.051 0.949 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.078 0.922 35 H 0.136 0.864 36 H 0.082 0.918 37 H 0.036 0.964 38 H 0.097 0.903 39 H 0.148 0.852 40 H 0.114 0.886 41 H 0.073 0.927 42 H 0.143 0.857 43 H 0.080 0.920 44 H 0.120 0.880 45 H 0.157 0.843 46 H 0.155 0.845 47 H 0.042 0.958 48 H 0.091 0.909 49 H 0.060 0.940 50 H 0.060 0.940 51 H 0.089 0.911 52 H 0.043 0.957 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.493 -14.355 -6.876 24.400 hybrid contribution -1.647 0.188 0.495 1.730 sum 16.846 -14.167 -6.381 22.917 Atomic orbital electron populations 1.22383 0.96806 1.03364 1.01548 1.21989 0.93771 0.80530 1.06142 1.48137 1.65203 1.15474 1.05723 1.21506 0.96574 0.97955 0.84825 1.22144 0.99154 1.00576 1.00617 1.21442 0.76132 0.86778 0.86992 1.90650 1.48635 1.17920 1.87869 1.21777 1.01844 0.90232 0.85181 0.86742 1.22794 0.91942 0.99649 0.99897 1.22852 0.95513 0.98286 0.99325 1.22436 0.89261 1.02294 0.88508 1.58487 1.40323 1.57112 1.28101 1.04810 0.74568 0.74911 0.74281 1.93461 1.83655 1.49624 1.71879 1.93515 1.85546 1.85556 1.31927 1.30507 1.13291 1.13930 1.13572 1.17912 0.89809 0.92036 0.93287 1.22211 1.01145 0.99086 0.99303 1.22154 1.02117 1.00365 0.96599 1.21226 0.93091 1.02068 1.39174 0.91438 1.25735 1.00838 0.95989 0.95715 1.69953 1.21226 1.17221 1.46502 0.85612 0.78103 0.78755 0.79177 1.19500 1.21443 1.19331 0.94890 0.88645 0.93153 0.87812 0.86511 0.92176 0.86448 0.91817 0.96382 0.90273 0.85176 0.88625 0.92657 0.85710 0.91992 0.87976 0.84342 0.84466 0.95849 0.90879 0.93980 0.93982 0.91091 0.95725 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.31 10.00 71.98 0.72 -2.59 16 2 C 0.10 1.30 5.79 86.38 0.50 1.80 16 3 N -0.61 -13.93 2.48 -821.80 -2.04 -15.97 16 4 C 0.11 2.43 6.13 86.38 0.53 2.96 16 5 C -0.17 -4.23 10.24 71.98 0.74 -3.49 16 6 C 0.50 15.22 5.24 87.66 0.46 15.68 16 7 O -0.57 -23.66 15.28 12.92 0.20 -23.46 16 8 C 0.12 2.85 2.60 44.60 0.12 2.97 16 9 H 0.12 2.19 5.54 -2.39 -0.01 2.17 16 10 C -0.10 -1.40 6.19 31.92 0.20 -1.20 16 11 C -0.12 -2.00 7.10 32.12 0.23 -1.77 16 12 C 0.10 2.34 7.07 86.85 0.61 2.95 16 13 N -1.00 -30.99 3.02 -488.11 -1.48 -32.46 16 14 S 2.61 109.72 4.57 -56.49 -0.26 109.46 16 15 O -1.00 -48.40 14.90 -127.65 -1.90 -50.30 16 16 O -0.98 -46.29 13.03 -120.85 -1.58 -47.86 16 17 C -0.58 -23.17 5.12 71.98 0.37 -22.80 16 18 C 0.07 3.60 0.52 -52.93 -0.03 3.57 16 19 C -0.16 -8.42 7.77 71.98 0.56 -7.86 16 20 C -0.15 -8.04 7.78 71.98 0.56 -7.48 16 21 C -0.52 -27.05 8.01 25.60 0.21 -26.84 16 22 H 0.07 3.33 7.74 -2.91 -0.02 3.30 16 23 C 0.02 0.88 5.15 84.65 0.44 1.32 16 24 N -0.91 -51.35 9.35 21.45 0.20 -51.15 16 25 Si 0.96 41.92 29.54 68.60 2.03 43.94 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 27 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 28 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 29 H 0.03 0.79 7.18 -2.39 -0.02 0.77 16 30 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.05 1.04 6.63 -2.39 -0.02 1.03 16 32 H 0.10 0.85 6.39 -2.39 -0.02 0.83 16 33 H 0.12 0.79 7.83 -2.39 -0.02 0.77 16 34 H 0.06 1.51 7.50 -2.39 -0.02 1.49 16 35 H 0.12 1.42 7.86 -2.39 -0.02 1.41 16 36 H 0.06 1.48 6.63 -2.39 -0.02 1.47 16 37 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.13 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.10 1.07 7.82 -2.39 -0.02 1.05 16 41 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.06 1.74 7.67 -2.39 -0.02 1.72 16 44 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.14 4.79 8.14 -2.39 -0.02 4.77 16 46 H 0.14 4.85 8.14 -2.39 -0.02 4.83 16 47 H 0.02 1.21 5.46 -2.39 -0.01 1.20 16 48 H 0.07 4.16 6.07 -2.39 -0.01 4.14 16 49 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.07 4.01 6.07 -2.39 -0.01 4.00 16 52 H 0.02 1.26 5.46 -2.39 -0.01 1.25 16 53 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -84.40 407.95 2.26 -82.14 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.89 Total: 28.45 kcal Atomic # 6 Polarization: -49.00 SS G_CDS: 6.20 Total: -42.80 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -3.32 Total: -99.58 kcal Atomic # 8 Polarization: -118.34 SS G_CDS: -3.28 Total: -121.62 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: 109.72 SS G_CDS: -0.26 Total: 109.46 kcal Total: -84.40 2.26 -82.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331316021.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.331 kcal (2) G-P(sol) polarization free energy of solvation -84.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds