Wall clock time and date at job start Tue Mar 31 2020 06:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34222 * 117.00299 * 2 1 4 4 O 1.20834 * 119.99845 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00530 * 179.97438 * 3 2 1 6 6 N 1.46490 * 109.47612 * 180.02562 * 5 3 2 7 7 C 1.37100 * 120.00140 * 264.04340 * 6 5 3 8 8 H 1.08001 * 120.00050 * 209.10346 * 7 6 5 9 9 C 1.38951 * 119.99815 * 29.10652 * 7 6 5 10 10 N 1.31408 * 120.00191 * 353.33851 * 9 7 6 11 11 Si 1.86799 * 119.99908 * 173.34163 * 9 7 6 12 12 H 1.48505 * 109.47045 * 59.99779 * 11 9 7 13 13 H 1.48493 * 109.47109 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47210 * 299.99997 * 11 9 7 15 15 C 1.34778 * 120.00367 * 84.03979 * 6 5 3 16 16 O 1.21298 * 119.99380 * 0.02562 * 15 6 5 17 17 C 1.50692 * 120.00563 * 180.02562 * 15 6 5 18 18 C 1.50702 * 109.47380 * 179.97438 * 17 15 6 19 19 C 1.38306 * 119.96471 * 269.97532 * 18 17 15 20 20 C 1.38264 * 120.13706 * 180.02562 * 19 18 17 21 21 C 1.38132 * 120.06995 * 359.72420 * 20 19 18 22 22 C 1.38848 * 119.93033 * 0.55586 * 21 20 19 23 23 N 1.39927 * 120.06959 * 179.71890 * 22 21 20 24 24 C 1.46758 * 124.35034 * 173.65549 * 23 22 21 25 25 C 1.54480 * 105.47414 * 162.98324 * 24 23 22 26 26 C 1.54620 * 101.76603 * 25.41760 * 25 24 23 27 27 C 1.34421 * 124.34739 * 353.65460 * 23 22 21 28 28 O 1.21282 * 124.94619 * 0.67910 * 27 23 22 29 29 C 1.38094 * 119.96055 * 90.00243 * 18 17 15 30 30 H 1.09003 * 109.46929 * 59.99889 * 1 2 3 31 31 H 1.08994 * 109.47087 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46994 * 300.00208 * 1 2 3 33 33 H 1.08999 * 109.46815 * 59.99673 * 5 3 2 34 34 H 1.09007 * 109.46792 * 300.00124 * 5 3 2 35 35 H 0.96999 * 120.00288 * 179.97438 * 10 9 7 36 36 H 1.08997 * 109.47329 * 59.99871 * 17 15 6 37 37 H 1.08997 * 109.47297 * 300.00349 * 17 15 6 38 38 H 1.07991 * 119.93029 * 0.02562 * 19 18 17 39 39 H 1.07995 * 119.95762 * 180.02562 * 20 19 18 40 40 H 1.07999 * 120.03169 * 180.27419 * 21 20 19 41 41 H 1.09004 * 110.24882 * 43.98598 * 24 23 22 42 42 H 1.09000 * 110.25093 * 281.98551 * 24 23 22 43 43 H 1.08996 * 110.97020 * 267.29707 * 25 24 23 44 44 H 1.09000 * 111.00039 * 143.55308 * 25 24 23 45 45 H 1.09001 * 110.49218 * 216.52410 * 26 25 24 46 46 H 1.09006 * 110.48931 * 93.87777 * 26 25 24 47 47 H 1.07997 * 120.04074 * 359.97438 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6796 0.0011 7 6 4.2948 3.3023 -1.1795 8 1 5.0118 4.1099 -1.1906 9 6 3.6894 2.8945 -2.3619 10 7 2.9183 1.8305 -2.3723 11 14 3.9718 3.8587 -3.9367 12 1 5.4213 3.8658 -4.2596 13 1 3.2206 3.2222 -5.0482 14 1 3.4985 5.2544 -3.7542 15 6 4.0563 3.3600 1.1621 16 8 3.7797 2.8089 2.2067 17 6 4.4830 4.8052 1.1626 18 6 4.4830 5.3286 2.5759 19 6 3.3403 5.9065 3.0985 20 6 3.3364 6.3883 4.3944 21 6 4.4729 6.2886 5.1733 22 6 5.6234 5.7143 4.6496 23 7 6.7781 5.6172 5.4340 24 6 7.9992 4.9125 5.0265 25 6 9.1077 5.4292 5.9703 26 6 8.2900 5.8654 7.2079 27 6 6.9113 6.1574 6.6577 28 8 6.0498 6.7832 7.2383 29 6 5.6241 5.2311 3.3474 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.9564 0.7805 -0.8891 34 1 3.9557 0.7808 0.8909 35 1 2.4954 1.5460 -3.1976 36 1 3.7883 5.3894 0.5592 37 1 5.4860 4.8880 0.7441 38 1 2.4492 5.9815 2.4930 39 1 2.4424 6.8386 4.7997 40 1 4.4678 6.6612 6.1869 41 1 8.2442 5.1501 3.9913 42 1 7.8721 3.8367 5.1473 43 1 9.6310 6.2777 5.5296 44 1 9.8063 4.6324 6.2253 45 1 8.7208 6.7623 7.6531 46 1 8.2457 5.0587 7.9397 47 1 6.5161 4.7798 2.9388 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346177038.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:03 Heat of formation + Delta-G solvation = -107.382950 kcal Electronic energy + Delta-G solvation = -32485.253701 eV Core-core repulsion = 28019.972550 eV Total energy + Delta-G solvation = -4465.281151 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.156 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.07473 -39.51824 -38.82856 -37.86486 -36.68979 -35.42200 -34.57638 -33.40668 -31.90873 -31.56594 -29.30586 -28.68830 -27.93798 -27.01442 -25.95084 -24.50239 -23.22821 -22.35684 -21.13011 -20.38945 -19.48393 -19.09051 -17.54286 -16.99423 -16.73054 -16.55200 -16.24135 -16.12164 -15.55217 -15.39030 -15.17754 -14.68856 -14.46210 -14.38193 -14.04347 -13.99144 -13.78554 -13.51326 -13.41760 -12.94095 -12.89664 -12.59396 -12.43191 -12.40972 -12.11212 -11.81989 -11.52488 -11.40806 -11.37550 -11.33211 -11.23081 -11.07632 -10.87338 -10.75568 -10.59098 -10.48767 -10.06546 -9.81403 -9.63434 -9.50007 -9.01391 -8.75148 -8.32970 -7.90534 -7.69011 -6.50979 -4.14787 1.51934 1.73860 2.55355 2.75017 3.07608 3.15360 3.16556 3.51182 3.71961 4.00045 4.01292 4.06340 4.11866 4.14994 4.48189 4.69014 4.76724 4.96363 5.12794 5.15080 5.21215 5.26431 5.34981 5.44321 5.54244 5.63060 5.68549 5.70619 5.73534 5.78513 5.80761 5.95235 6.02030 6.12963 6.22070 6.26484 6.33596 6.48911 6.51485 6.66650 6.81282 6.83916 7.06273 7.12329 7.27373 7.36691 7.49457 7.66413 7.96198 8.21142 8.95142 9.12595 9.33812 9.75009 10.55043 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.012622 B = 0.002646 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.874615 B =10580.848548 C =11363.539104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.489 3.511 4 O -0.509 6.509 5 C 0.159 3.841 6 N -0.435 5.435 7 C -0.336 4.336 8 H 0.100 0.900 9 C 0.045 3.955 10 N -0.880 5.880 11 Si 0.929 3.071 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.481 3.519 16 O -0.591 6.591 17 C -0.085 4.085 18 C -0.020 4.020 19 C -0.125 4.125 20 C -0.095 4.095 21 C -0.164 4.164 22 C 0.155 3.845 23 N -0.555 5.555 24 C 0.093 3.907 25 C -0.131 4.131 26 C -0.153 4.153 27 C 0.513 3.487 28 O -0.517 6.517 29 C -0.141 4.141 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.132 0.868 34 H 0.074 0.926 35 H 0.274 0.726 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.148 0.852 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.889 3.245 9.097 13.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.292 6.292 3 C 0.330 3.670 4 O -0.394 6.394 5 C 0.033 3.967 6 N -0.155 5.155 7 C -0.463 4.463 8 H 0.118 0.882 9 C -0.159 4.159 10 N -0.519 5.519 11 Si 0.756 3.244 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.197 1.197 15 C 0.270 3.730 16 O -0.476 6.476 17 C -0.124 4.124 18 C -0.021 4.021 19 C -0.144 4.144 20 C -0.113 4.113 21 C -0.184 4.184 22 C 0.062 3.938 23 N -0.278 5.278 24 C -0.030 4.030 25 C -0.168 4.168 26 C -0.193 4.193 27 C 0.302 3.698 28 O -0.393 6.393 29 C -0.162 4.162 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.150 0.850 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.166 0.834 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.114 0.886 45 H 0.123 0.877 46 H 0.126 0.874 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.968 3.484 9.756 13.702 hybrid contribution -0.335 0.314 -1.266 1.347 sum 8.633 3.798 8.490 12.690 Atomic orbital electron populations 1.22920 0.78885 1.01767 1.01527 1.86460 1.21521 1.35579 1.85659 1.24003 0.92403 0.80426 0.70135 1.90501 1.66656 1.36465 1.45823 1.20519 0.86928 0.85772 1.03469 1.43276 1.58153 1.08010 1.06049 1.19546 1.24103 1.18630 0.83996 0.88214 1.25341 0.94542 0.95988 1.00041 1.69618 1.30597 1.22802 1.28879 0.85962 0.78355 0.79826 0.80294 1.19790 1.20898 1.19706 1.20089 0.81439 0.87719 0.83785 1.90578 1.54665 1.70284 1.32031 1.20465 1.03687 0.95318 0.92972 1.19333 0.92633 0.94822 0.95294 1.21033 0.97850 0.99631 0.95881 1.20941 0.97440 0.99104 0.93833 1.21441 0.91661 1.03168 1.02109 1.17644 0.85509 1.00039 0.90597 1.45739 1.13560 1.51373 1.17174 1.22278 0.82844 0.97456 1.00404 1.22618 0.96999 1.02615 0.94614 1.22340 0.93107 1.04661 0.99205 1.21045 0.90034 0.78036 0.80701 1.90623 1.46310 1.40078 1.62269 1.20523 0.99390 1.03981 0.92279 0.92768 0.89628 0.93193 0.85012 0.90851 0.91550 0.88203 0.89164 0.86087 0.86017 0.83437 0.89325 0.89915 0.89659 0.88647 0.87704 0.87442 0.86114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.84 16 2 O -0.37 -8.21 10.56 -39.24 -0.41 -8.62 16 3 C 0.49 12.18 6.03 36.01 0.22 12.40 16 4 O -0.51 -14.15 15.77 -18.76 -0.30 -14.45 16 5 C 0.16 3.79 5.13 -5.20 -0.03 3.76 16 6 N -0.44 -10.62 2.18 -116.10 -0.25 -10.87 16 7 C -0.34 -8.04 8.91 -14.93 -0.13 -8.17 16 8 H 0.10 2.18 6.74 -52.49 -0.35 1.83 16 9 C 0.05 1.09 5.37 -17.47 -0.09 1.00 16 10 N -0.88 -22.24 8.62 55.50 0.48 -21.76 16 11 Si 0.93 18.93 29.56 -169.99 -5.02 13.91 16 12 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 13 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 15 C 0.48 11.36 7.41 -10.99 -0.08 11.28 16 16 O -0.59 -15.42 15.71 5.54 0.09 -15.33 16 17 C -0.08 -1.63 4.43 -29.04 -0.13 -1.76 16 18 C -0.02 -0.36 4.37 -104.65 -0.46 -0.82 16 19 C -0.13 -2.23 9.70 -39.55 -0.38 -2.62 16 20 C -0.09 -1.55 10.04 -39.61 -0.40 -1.95 16 21 C -0.16 -2.77 9.29 -39.39 -0.37 -3.13 16 22 C 0.15 2.50 6.59 -83.69 -0.55 1.95 16 23 N -0.55 -7.28 3.14 -112.27 -0.35 -7.63 16 24 C 0.09 0.82 6.51 -3.12 -0.02 0.80 16 25 C -0.13 -0.74 7.18 -25.10 -0.18 -0.92 16 26 C -0.15 -1.15 6.86 -26.74 -0.18 -1.33 16 27 C 0.51 6.62 7.92 -10.86 -0.09 6.54 16 28 O -0.52 -8.48 14.82 5.56 0.08 -8.39 16 29 C -0.14 -2.34 9.07 -39.39 -0.36 -2.70 16 30 H 0.05 0.99 8.13 -51.93 -0.42 0.56 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 33 H 0.13 3.14 6.42 -51.93 -0.33 2.80 16 34 H 0.07 1.66 7.61 -51.93 -0.39 1.26 16 35 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.10 1.91 8.04 -51.93 -0.42 1.50 16 37 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16 38 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 39 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 40 H 0.15 2.54 5.26 -52.49 -0.28 2.27 16 41 H 0.09 0.72 7.22 -51.93 -0.38 0.34 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.12 1.76 6.74 -52.49 -0.35 1.41 16 LS Contribution 392.21 15.07 5.91 5.91 Total: -1.00 -34.20 392.21 -8.20 -42.40 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.26 Total: 8.68 kcal Atomic # 6 Polarization: 18.32 SS G_CDS: -2.16 Total: 16.15 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: -0.13 Total: -40.26 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -0.54 Total: -46.79 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.20 -8.20 -42.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346177038.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.979 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds