Wall clock time and date at job start Tue Mar 31 2020 05:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.49600 * 2 1 4 4 C 1.53621 * 109.63313 * 239.90531 * 2 1 3 5 5 N 1.46929 * 108.54336 * 294.86193 * 4 2 1 6 6 S 1.65599 * 120.63010 * 126.36952 * 5 4 2 7 7 O 1.42105 * 104.27655 * 153.64847 * 6 5 4 8 8 O 1.42101 * 104.27764 * 25.79284 * 6 5 4 9 9 C 1.81395 * 104.44748 * 269.72153 * 6 5 4 10 10 C 1.52999 * 109.46986 * 180.02562 * 9 6 5 11 11 C 1.50700 * 109.47535 * 180.02562 * 10 9 6 12 12 H 1.08006 * 119.99840 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00463 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00062 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00103 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47443 * 59.99483 * 15 13 11 17 17 H 1.48505 * 109.47343 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47001 * 299.99442 * 15 13 11 19 19 C 1.46927 * 118.73582 * 306.09464 * 5 4 2 20 20 C 1.53194 * 108.77726 * 53.86011 * 19 5 4 21 21 C 1.53039 * 109.50071 * 120.06651 * 2 1 3 22 22 H 1.08996 * 109.45212 * 178.59752 * 21 2 1 23 23 N 1.46901 * 109.46366 * 298.56977 * 21 2 1 24 24 C 1.46964 * 110.99634 * 303.86661 * 23 21 2 25 25 C 1.53047 * 109.36147 * 176.81225 * 24 23 21 26 26 N 1.46952 * 109.36759 * 58.40072 * 25 24 23 27 27 C 1.46905 * 110.99985 * 176.81097 * 26 25 24 28 28 C 1.46955 * 110.87958 * 300.67623 * 26 25 24 29 29 C 1.46952 * 111.00301 * 180.02562 * 23 21 2 30 30 H 1.09005 * 109.46964 * 299.93003 * 1 2 3 31 31 H 1.08997 * 109.47328 * 59.93557 * 1 2 3 32 32 H 1.09004 * 109.46580 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.73806 * 175.12612 * 4 2 1 34 34 H 1.09000 * 109.66509 * 54.55526 * 4 2 1 35 35 H 1.09003 * 109.47393 * 299.99669 * 9 6 5 36 36 H 1.08994 * 109.47678 * 60.00285 * 9 6 5 37 37 H 1.09004 * 109.47080 * 299.99725 * 10 9 6 38 38 H 1.09005 * 109.47285 * 59.99790 * 10 9 6 39 39 H 0.96996 * 119.99792 * 180.02562 * 14 13 11 40 40 H 1.09002 * 109.58380 * 173.64930 * 19 5 4 41 41 H 1.09000 * 109.59060 * 294.07021 * 19 5 4 42 42 H 1.09002 * 109.49393 * 65.31241 * 20 19 5 43 43 H 1.08998 * 109.49581 * 185.40911 * 20 19 5 44 44 H 1.09006 * 109.48387 * 296.77955 * 24 23 21 45 45 H 1.08995 * 109.48640 * 56.84148 * 24 23 21 46 46 H 1.09003 * 109.49032 * 298.42644 * 25 24 23 47 47 H 1.08998 * 109.48447 * 178.37075 * 25 24 23 48 48 H 1.08998 * 109.46698 * 183.79703 * 27 26 25 49 49 H 1.08996 * 109.47045 * 303.79575 * 27 26 25 50 50 H 1.08998 * 109.47047 * 63.80057 * 27 26 25 51 51 H 1.08999 * 109.49084 * 299.35633 * 28 26 25 52 52 H 1.09000 * 109.48894 * 179.28699 * 28 26 25 53 53 H 1.09001 * 109.48492 * 303.15496 * 29 23 21 54 54 H 1.08998 * 109.48721 * 63.19631 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0462 -0.7255 -1.2519 5 7 1.6515 -2.1384 -1.1691 6 16 0.8200 -2.8561 -2.4084 7 8 1.1543 -4.2333 -2.3034 8 8 1.1805 -2.1002 -3.5564 9 6 -0.9262 -2.5916 -1.9946 10 6 -1.8074 -3.2176 -3.0775 11 6 -3.2581 -2.9974 -2.7342 12 1 -3.5250 -2.4645 -1.8334 13 6 -4.2447 -3.4769 -3.5693 14 7 -3.9198 -4.1262 -4.6660 15 14 -6.0430 -3.2045 -3.1433 16 1 -6.3176 -1.7473 -3.0634 17 1 -6.8983 -3.8120 -4.1944 18 1 -6.3428 -3.8372 -1.8338 19 6 2.0141 -2.9040 0.0314 20 6 1.5031 -2.1555 1.2665 21 6 2.0409 -0.7227 1.2485 22 1 3.1305 -0.7441 1.2352 23 7 1.5799 -0.0120 2.4486 24 6 2.0023 1.3954 2.4219 25 6 1.4365 2.1183 3.6465 26 7 1.9104 1.4523 4.8677 27 6 1.4494 2.1632 6.0678 28 6 1.4880 0.0450 4.8944 29 6 2.0530 -0.6785 3.6698 30 1 -0.3633 0.5128 0.8907 31 1 -0.3634 0.5148 -0.8894 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1327 -0.6517 -1.2984 34 1 1.6088 -0.2756 -2.1431 35 1 -1.1465 -3.0567 -1.0337 36 1 -1.1276 -1.5221 -1.9352 37 1 -1.5873 -2.7529 -4.0386 38 1 -1.6059 -4.2872 -3.1365 39 1 -4.6140 -4.4632 -5.2537 40 1 1.5555 -3.8918 -0.0129 41 1 3.0980 -3.0042 0.0874 42 1 0.4134 -2.1352 1.2545 43 1 1.8482 -2.6624 2.1676 44 1 3.0909 1.4486 2.4388 45 1 1.6288 1.8700 1.5146 46 1 0.3473 2.0886 3.6153 47 1 1.7724 3.1552 3.6439 48 1 1.8694 1.6889 6.9547 49 1 1.7756 3.2022 6.0223 50 1 0.3612 2.1258 6.1166 51 1 0.3994 -0.0083 4.8773 52 1 1.8615 -0.4296 5.8017 53 1 1.7164 -1.7153 3.6719 54 1 3.1421 -0.6497 3.7012 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408028066.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:47 Heat of formation + Delta-G solvation = -84.574812 kcal Electronic energy + Delta-G solvation = -32502.129467 eV Core-core repulsion = 28406.833059 eV Total energy + Delta-G solvation = -4095.296408 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.203 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.06793 -39.18523 -38.22639 -37.02234 -36.19598 -35.89422 -33.58313 -33.09675 -32.36707 -31.58399 -28.94601 -27.82071 -27.25781 -25.28302 -25.08030 -23.82276 -23.34116 -23.01046 -20.86302 -20.36026 -19.40688 -19.11258 -18.37899 -17.34109 -17.19337 -17.05343 -16.53925 -16.19124 -16.06684 -15.93323 -15.68590 -15.50018 -15.46315 -15.23807 -15.06093 -14.47040 -14.45264 -14.16568 -13.95626 -13.74677 -13.48368 -13.33630 -13.19930 -13.16967 -13.04100 -12.91117 -12.80190 -12.73345 -12.65718 -12.39277 -12.33364 -12.21645 -12.18028 -12.13996 -12.02526 -11.91709 -11.72580 -11.50616 -11.30423 -11.02705 -10.97771 -10.63473 -9.88504 -9.36653 -9.14254 -8.25265 -6.39097 -0.69343 1.40351 1.43757 1.51853 1.75091 2.38201 2.82623 2.90321 3.02314 3.07859 3.17465 3.61877 3.71065 3.95001 4.00486 4.05990 4.12214 4.14115 4.20043 4.25459 4.33700 4.35957 4.42214 4.45946 4.53309 4.58722 4.64607 4.69085 4.71360 4.74704 4.78697 4.82048 4.83591 4.92554 4.98467 4.99113 5.01826 5.06987 5.10315 5.11279 5.22715 5.27482 5.28389 5.35341 5.43542 5.57793 5.68917 5.72784 6.01976 6.03202 6.07353 6.23458 6.25466 6.74096 7.30842 8.86793 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.011434 B = 0.002804 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.216662 B = 9983.184266 C =11524.812403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 H 0.098 0.902 4 C 0.121 3.879 5 N -0.992 5.992 6 S 2.611 3.389 7 O -0.994 6.994 8 O -0.994 6.994 9 C -0.587 4.587 10 C 0.024 3.976 11 C -0.536 4.536 12 H 0.074 0.926 13 C -0.003 4.003 14 N -0.935 5.935 15 Si 0.972 3.028 16 H -0.263 1.263 17 H -0.284 1.284 18 H -0.263 1.263 19 C 0.119 3.881 20 C -0.129 4.129 21 C 0.101 3.899 22 H 0.049 0.951 23 N -0.538 5.538 24 C 0.056 3.944 25 C 0.059 3.941 26 N -0.556 5.556 27 C 0.026 3.974 28 C 0.059 3.941 29 C 0.056 3.944 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.004 0.996 38 H 0.004 0.996 39 H 0.267 0.733 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.038 0.962 45 H 0.090 0.910 46 H 0.032 0.968 47 H 0.087 0.913 48 H 0.074 0.926 49 H 0.074 0.926 50 H 0.023 0.977 51 H 0.032 0.968 52 H 0.087 0.913 53 H 0.090 0.910 54 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.556 13.026 22.073 29.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 H 0.116 0.884 4 C -0.004 4.004 5 N -0.831 5.831 6 S 2.709 3.291 7 O -0.984 6.984 8 O -0.984 6.984 9 C -0.718 4.718 10 C -0.015 4.015 11 C -0.575 4.575 12 H 0.093 0.907 13 C -0.202 4.202 14 N -0.574 5.574 15 Si 0.796 3.204 16 H -0.188 1.188 17 H -0.210 1.210 18 H -0.188 1.188 19 C -0.006 4.006 20 C -0.168 4.168 21 C -0.007 4.007 22 H 0.067 0.933 23 N -0.263 5.263 24 C -0.072 4.072 25 C -0.070 4.070 26 N -0.281 5.281 27 C -0.122 4.122 28 C -0.069 4.069 29 C -0.072 4.072 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.022 0.978 38 H 0.023 0.977 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.111 0.889 44 H 0.056 0.944 45 H 0.108 0.892 46 H 0.050 0.950 47 H 0.105 0.895 48 H 0.093 0.907 49 H 0.093 0.907 50 H 0.041 0.959 51 H 0.050 0.950 52 H 0.105 0.895 53 H 0.108 0.892 54 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.935 12.499 21.190 28.780 hybrid contribution -1.503 0.041 0.031 1.504 sum 13.432 12.539 21.221 28.071 Atomic orbital electron populations 1.21922 0.94823 1.02175 1.01880 1.21634 0.96735 0.99784 0.93184 0.88362 1.21760 1.01282 0.78567 0.98833 1.57561 1.70666 1.20724 1.34125 1.04765 0.77533 0.73069 0.73699 1.93487 1.83351 1.35041 1.86570 1.93485 1.82741 1.72691 1.49503 1.30453 1.20653 1.11192 1.09537 1.18785 0.95793 0.94786 0.92120 1.21461 0.90827 1.36605 1.08626 0.90744 1.26100 1.04829 0.94534 0.94708 1.70097 1.35331 1.38196 1.13785 0.85394 0.77843 0.79023 0.78185 1.18798 1.20968 1.18784 1.21587 1.01794 0.94412 0.82828 1.22078 1.02303 0.94767 0.97624 1.21444 0.96937 0.93249 0.89049 0.93318 1.62135 1.60210 1.02247 1.01725 1.22212 0.98096 0.88598 0.98302 1.22165 0.97549 0.98159 0.89079 1.62221 1.60096 1.02826 1.02974 1.22369 0.97892 0.99539 0.92432 1.22161 0.97899 0.88452 0.98431 1.22209 0.97749 0.98519 0.88709 0.91238 0.93376 0.92853 0.89428 0.89673 0.84411 0.84371 0.97753 0.97730 0.92415 0.89605 0.89540 0.90797 0.88938 0.94415 0.89171 0.94990 0.89498 0.90702 0.90723 0.95880 0.95003 0.89469 0.89161 0.94403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.02 71.98 0.58 -2.49 16 2 C -0.09 -1.57 2.28 -10.57 -0.02 -1.59 16 3 H 0.10 1.34 6.20 -2.38 -0.01 1.32 16 4 C 0.12 2.50 5.75 86.51 0.50 3.00 16 5 N -0.99 -25.03 2.65 -512.27 -1.36 -26.38 16 6 S 2.61 95.16 5.41 -56.49 -0.31 94.86 16 7 O -0.99 -41.85 16.73 -127.65 -2.14 -43.98 16 8 O -0.99 -41.88 16.71 -127.65 -2.13 -44.01 16 9 C -0.59 -22.57 5.09 71.98 0.37 -22.20 16 10 C 0.02 1.27 4.98 29.85 0.15 1.42 16 11 C -0.54 -29.89 9.11 25.60 0.23 -29.65 16 12 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 13 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 14 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 15 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 16 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 18 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 19 C 0.12 2.41 6.31 86.36 0.55 2.96 16 20 C -0.13 -2.12 4.83 30.67 0.15 -1.97 16 21 C 0.10 1.55 1.60 44.94 0.07 1.62 16 22 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 23 N -0.54 -8.10 3.88 -870.33 -3.37 -11.47 16 24 C 0.06 0.77 5.23 86.31 0.45 1.22 16 25 C 0.06 0.81 5.62 86.31 0.49 1.29 16 26 N -0.56 -7.88 4.97 -921.97 -4.58 -12.46 16 27 C 0.03 0.28 9.60 127.69 1.23 1.51 16 28 C 0.06 0.81 5.62 86.31 0.48 1.29 16 29 C 0.06 0.77 5.32 86.31 0.46 1.23 16 30 H 0.07 1.37 7.65 -2.38 -0.02 1.35 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 1.20 4.39 -2.38 -0.01 1.19 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.96 7.09 -2.39 -0.02 1.94 16 35 H 0.14 4.69 8.14 -2.39 -0.02 4.67 16 36 H 0.14 4.77 7.09 -2.39 -0.02 4.75 16 37 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 39 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 40 H 0.09 1.92 7.10 -2.39 -0.02 1.90 16 41 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.07 1.41 6.33 -2.39 -0.02 1.39 16 43 H 0.09 1.19 6.27 -2.39 -0.01 1.18 16 44 H 0.04 0.55 8.14 -2.38 -0.02 0.53 16 45 H 0.09 1.15 6.03 -2.39 -0.01 1.13 16 46 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.09 1.00 8.13 -2.39 -0.02 0.98 16 48 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.07 0.71 8.13 -2.39 -0.02 0.69 16 50 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 51 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 52 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 53 H 0.09 1.11 6.11 -2.39 -0.01 1.10 16 54 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -74.18 409.87 -4.58 -78.75 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.86 Total: 18.21 kcal Atomic # 6 Polarization: -48.22 SS G_CDS: 6.13 Total: -42.09 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -9.03 Total: -107.28 kcal Atomic # 8 Polarization: -83.73 SS G_CDS: -4.27 Total: -88.00 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 95.16 SS G_CDS: -0.31 Total: 94.86 kcal Total: -74.18 -4.58 -78.75 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408028066.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.821 kcal (2) G-P(sol) polarization free energy of solvation -74.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds