Wall clock time and date at job start Tue Mar 31 2020 05:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.49918 * 2 1 4 4 C 1.53188 * 109.49945 * 120.07049 * 2 1 3 5 5 N 1.46930 * 108.77810 * 174.58634 * 4 2 1 6 6 S 1.65597 * 120.63217 * 126.40886 * 5 4 2 7 7 O 1.42099 * 104.28006 * 206.07024 * 6 5 4 8 8 O 1.42102 * 104.27987 * 333.93488 * 6 5 4 9 9 C 1.81402 * 104.44981 * 90.00031 * 6 5 4 10 10 C 1.53000 * 109.47364 * 179.97438 * 9 6 5 11 11 C 1.50700 * 109.47248 * 180.02562 * 10 9 6 12 12 H 1.08005 * 119.99548 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00395 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99657 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00429 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46854 * 359.97438 * 15 13 11 17 17 H 1.48491 * 109.47182 * 119.99979 * 15 13 11 18 18 H 1.48508 * 109.46953 * 240.00021 * 15 13 11 19 19 C 1.46922 * 118.73728 * 306.38939 * 5 4 2 20 20 C 1.53195 * 108.77579 * 53.60763 * 19 5 4 21 21 C 1.53043 * 109.49600 * 239.90637 * 2 1 3 22 22 H 1.08997 * 109.45984 * 298.70270 * 21 2 1 23 23 N 1.46897 * 109.45970 * 58.66186 * 21 2 1 24 24 C 1.46963 * 110.99921 * 192.16315 * 23 21 2 25 25 C 1.53053 * 109.36071 * 176.81270 * 24 23 21 26 26 N 1.46951 * 109.36484 * 58.40671 * 25 24 23 27 27 C 1.46901 * 111.00177 * 176.80957 * 26 25 24 28 28 C 1.46957 * 110.88258 * 300.67363 * 26 25 24 29 29 C 1.46961 * 110.99846 * 68.36909 * 23 21 2 30 30 H 1.09004 * 109.47168 * 294.68701 * 1 2 3 31 31 H 1.09001 * 109.46906 * 174.68851 * 1 2 3 32 32 H 1.09001 * 109.47414 * 54.68614 * 1 2 3 33 33 H 1.09003 * 109.58455 * 294.37087 * 4 2 1 34 34 H 1.08999 * 109.59061 * 54.65466 * 4 2 1 35 35 H 1.09001 * 109.47130 * 300.00376 * 9 6 5 36 36 H 1.09007 * 109.46727 * 59.99998 * 9 6 5 37 37 H 1.09007 * 109.46926 * 300.00053 * 10 9 6 38 38 H 1.08999 * 109.47058 * 60.00043 * 10 9 6 39 39 H 0.97000 * 120.00253 * 179.97438 * 14 13 11 40 40 H 1.08999 * 109.58853 * 173.39547 * 19 5 4 41 41 H 1.08996 * 109.58885 * 293.67899 * 19 5 4 42 42 H 1.09005 * 109.49719 * 65.31459 * 20 19 5 43 43 H 1.09004 * 109.49740 * 185.38144 * 20 19 5 44 44 H 1.08997 * 109.49082 * 296.78029 * 24 23 21 45 45 H 1.08993 * 109.48483 * 56.84699 * 24 23 21 46 46 H 1.08998 * 109.49074 * 298.43590 * 25 24 23 47 47 H 1.09002 * 109.48339 * 178.37113 * 25 24 23 48 48 H 1.08992 * 109.47576 * 183.79413 * 27 26 25 49 49 H 1.08999 * 109.47158 * 303.80141 * 27 26 25 50 50 H 1.09003 * 109.47016 * 63.79625 * 27 26 25 51 51 H 1.09003 * 109.49232 * 299.35916 * 28 26 25 52 52 H 1.08994 * 109.49496 * 179.29066 * 28 26 25 53 53 H 1.09002 * 109.48902 * 303.15115 * 29 23 21 54 54 H 1.08997 * 109.49228 * 63.19937 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 1.2497 5 7 3.5046 -0.8289 1.1697 6 16 4.4587 -0.2846 2.4089 7 8 5.6955 0.0330 1.7855 8 8 3.6761 0.7206 3.0384 9 6 4.6465 -1.7214 3.5003 10 6 5.5196 -1.3416 4.6979 11 6 5.6761 -2.5354 5.6042 12 1 5.2001 -3.4713 5.3514 13 6 6.4270 -2.4329 6.7560 14 7 7.0063 -1.2930 7.0640 15 14 6.6216 -3.9128 7.8790 16 1 5.8764 -5.0655 7.3123 17 1 8.0605 -4.2612 7.9939 18 1 6.0820 -3.5880 9.2239 19 6 4.1053 -1.4267 -0.0305 20 6 3.5708 -0.6953 -1.2659 21 6 2.0407 -0.7234 -1.2482 22 1 1.6966 -1.7575 -1.2349 23 7 1.5250 -0.0517 -2.4485 24 6 1.7485 -0.8713 -3.6477 25 6 1.1280 -0.1749 -4.8612 26 7 1.7282 1.1573 -5.0181 27 6 1.2125 1.8290 -6.2184 28 6 1.5048 1.9770 -3.8190 29 6 2.1252 1.2805 -2.6054 30 1 -0.3634 0.4292 0.9338 31 1 -0.3633 -1.0233 -0.0951 32 1 -0.3634 0.5940 -0.8386 33 1 1.7638 -0.1574 2.1389 34 1 1.6033 -1.7204 1.2997 35 1 3.6656 -2.0411 3.8521 36 1 5.1186 -2.5358 2.9507 37 1 6.5005 -1.0222 4.3457 38 1 5.0480 -0.5270 5.2476 39 1 7.5343 -1.2207 7.8745 40 1 5.1895 -1.3246 0.0140 41 1 3.8396 -2.4824 -0.0849 42 1 3.9158 0.3386 -1.2542 43 1 3.9338 -1.1899 -2.1669 44 1 2.8192 -0.9965 -3.8084 45 1 1.2841 -1.8481 -3.5122 46 1 0.0529 -0.0742 -4.7124 47 1 1.3177 -0.7669 -5.7565 48 1 1.7221 2.7838 -6.3477 49 1 1.3907 1.2009 -7.0912 50 1 0.1419 2.0008 -6.1069 51 1 0.4340 2.1021 -3.6582 52 1 1.9691 2.9537 -3.9544 53 1 1.9355 1.8726 -1.7101 54 1 3.2003 1.1799 -2.7538 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408028067.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:52 Heat of formation + Delta-G solvation = -89.848420 kcal Electronic energy + Delta-G solvation = -31964.021204 eV Core-core repulsion = 27868.496115 eV Total energy + Delta-G solvation = -4095.525089 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.203 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.11806 -39.05420 -38.23997 -37.02288 -36.22394 -35.89915 -33.94786 -33.13044 -32.04076 -31.86266 -28.85562 -27.63029 -27.29772 -25.35468 -24.71607 -23.89623 -23.40666 -23.17995 -21.18034 -20.25263 -19.64050 -19.03353 -18.37944 -17.39809 -17.21659 -17.04432 -16.53343 -16.19131 -16.03261 -15.89498 -15.74405 -15.63280 -15.29900 -15.10862 -15.04517 -14.56300 -14.47480 -14.31384 -13.74330 -13.58221 -13.50088 -13.40232 -13.31177 -13.18406 -13.01510 -12.95865 -12.79351 -12.77496 -12.66983 -12.53688 -12.43430 -12.26840 -12.13855 -12.10148 -11.97917 -11.80289 -11.69526 -11.62791 -11.56594 -11.17278 -11.02010 -10.66784 -9.91516 -9.36430 -9.12801 -8.27033 -6.41338 -0.71831 1.40398 1.41139 1.54544 1.74367 2.37341 2.83830 2.90238 3.00845 3.06222 3.16945 3.59469 3.79170 3.84753 3.98683 4.03482 4.07181 4.11272 4.16350 4.24119 4.26569 4.34544 4.41048 4.42843 4.52763 4.62181 4.62818 4.67429 4.70362 4.74458 4.79011 4.81273 4.83864 4.86232 4.90651 4.95825 5.01378 5.08700 5.11787 5.13553 5.21861 5.24811 5.25796 5.27420 5.44385 5.52152 5.67411 5.71346 5.99455 6.01849 6.04996 6.19199 6.22669 6.72629 7.28986 8.85440 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.026766 B = 0.002069 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.849564 B =13526.715326 C =13584.207252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.091 4.091 3 H 0.054 0.946 4 C 0.115 3.885 5 N -0.995 5.995 6 S 2.611 3.389 7 O -0.996 6.996 8 O -0.994 6.994 9 C -0.586 4.586 10 C 0.020 3.980 11 C -0.538 4.538 12 H 0.077 0.923 13 C -0.006 4.006 14 N -0.935 5.935 15 Si 0.976 3.024 16 H -0.255 1.255 17 H -0.278 1.278 18 H -0.278 1.278 19 C 0.116 3.884 20 C -0.158 4.158 21 C 0.099 3.901 22 H 0.103 0.897 23 N -0.527 5.527 24 C 0.055 3.945 25 C 0.060 3.940 26 N -0.559 5.559 27 C 0.027 3.973 28 C 0.062 3.938 29 C 0.052 3.948 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.004 0.996 38 H 0.005 0.995 39 H 0.267 0.733 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.051 0.949 43 H 0.088 0.912 44 H 0.038 0.962 45 H 0.094 0.906 46 H 0.038 0.962 47 H 0.089 0.911 48 H 0.069 0.931 49 H 0.076 0.924 50 H 0.027 0.973 51 H 0.038 0.962 52 H 0.079 0.921 53 H 0.073 0.927 54 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.404 -0.949 -26.470 31.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.111 4.111 3 H 0.072 0.928 4 C -0.010 4.010 5 N -0.834 5.834 6 S 2.709 3.291 7 O -0.986 6.986 8 O -0.984 6.984 9 C -0.718 4.718 10 C -0.019 4.019 11 C -0.576 4.576 12 H 0.095 0.905 13 C -0.204 4.204 14 N -0.574 5.574 15 Si 0.799 3.201 16 H -0.178 1.178 17 H -0.204 1.204 18 H -0.204 1.204 19 C -0.009 4.009 20 C -0.199 4.199 21 C -0.009 4.009 22 H 0.121 0.879 23 N -0.250 5.250 24 C -0.073 4.073 25 C -0.068 4.068 26 N -0.285 5.285 27 C -0.121 4.121 28 C -0.066 4.066 29 C -0.076 4.076 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.118 0.882 42 H 0.070 0.930 43 H 0.107 0.893 44 H 0.057 0.943 45 H 0.112 0.888 46 H 0.056 0.944 47 H 0.107 0.893 48 H 0.088 0.912 49 H 0.095 0.905 50 H 0.045 0.955 51 H 0.056 0.944 52 H 0.098 0.902 53 H 0.091 0.909 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.974 0.035 -26.317 30.786 hybrid contribution 0.586 -0.532 1.091 1.348 sum -15.388 -0.497 -25.226 29.553 Atomic orbital electron populations 1.21551 0.92430 1.02776 1.01547 1.21422 0.97503 0.98847 0.93356 0.92778 1.21779 0.77411 1.02586 0.99246 1.57573 1.16546 1.78482 1.30828 1.04743 0.72860 0.76980 0.74484 1.93478 1.46296 1.83822 1.75032 1.93480 1.70473 1.56676 1.77813 1.30387 1.10173 1.19277 1.11965 1.18825 0.93431 0.97762 0.91873 1.21548 1.31829 0.97645 1.06626 0.90528 1.26151 0.94950 0.99510 0.99811 1.70114 1.33806 1.27201 1.26322 0.85238 0.78128 0.78716 0.78006 1.17812 1.20380 1.20360 1.21584 0.98130 0.98306 0.82912 1.22515 0.98199 1.00984 0.98170 1.21684 0.91124 0.98937 0.89205 0.87945 1.62406 1.57284 1.02656 1.02653 1.22227 0.99389 0.96859 0.88843 1.22174 0.96605 0.89757 0.98275 1.62175 1.58975 1.03820 1.03490 1.22357 0.97690 0.99763 0.92295 1.22106 0.98952 0.96405 0.89130 1.22181 0.96870 0.90903 0.97683 0.93145 0.91457 0.91824 0.89859 0.88254 0.84023 0.84091 0.97744 0.97683 0.92396 0.90146 0.88210 0.92987 0.89344 0.94342 0.88765 0.94407 0.89261 0.91171 0.90512 0.95488 0.94376 0.90235 0.90872 0.94617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 8.94 71.98 0.64 -1.27 16 2 C -0.09 -1.69 2.22 -10.72 -0.02 -1.71 16 3 H 0.05 1.24 6.63 -2.39 -0.02 1.23 16 4 C 0.11 2.40 5.71 86.36 0.49 2.90 16 5 N -1.00 -25.35 3.22 -513.07 -1.65 -27.00 16 6 S 2.61 95.40 5.45 -56.49 -0.31 95.10 16 7 O -1.00 -42.45 16.59 -127.65 -2.12 -44.57 16 8 O -0.99 -42.17 16.59 -127.65 -2.12 -44.29 16 9 C -0.59 -22.28 6.12 71.98 0.44 -21.84 16 10 C 0.02 1.06 4.98 29.85 0.15 1.21 16 11 C -0.54 -29.93 9.11 25.60 0.23 -29.70 16 12 H 0.08 3.93 7.74 -2.91 -0.02 3.90 16 13 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 14 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 15 Si 0.98 43.36 29.54 68.60 2.03 45.39 16 16 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 C 0.12 2.40 6.43 86.36 0.56 2.95 16 20 C -0.16 -2.91 4.53 30.67 0.14 -2.77 16 21 C 0.10 1.56 1.60 44.94 0.07 1.63 16 22 H 0.10 1.32 7.98 -2.39 -0.02 1.30 16 23 N -0.53 -8.04 3.93 -870.29 -3.42 -11.46 16 24 C 0.05 0.70 5.36 86.31 0.46 1.17 16 25 C 0.06 0.75 5.62 86.31 0.49 1.23 16 26 N -0.56 -8.25 4.97 -921.95 -4.58 -12.83 16 27 C 0.03 0.30 9.60 127.69 1.23 1.52 16 28 C 0.06 0.97 5.62 86.31 0.49 1.45 16 29 C 0.05 0.91 4.70 86.31 0.41 1.32 16 30 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 1.02 7.75 -2.39 -0.02 1.00 16 33 H 0.08 2.00 6.86 -2.39 -0.02 1.99 16 34 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.14 4.68 8.14 -2.39 -0.02 4.66 16 36 H 0.14 4.67 8.14 -2.39 -0.02 4.65 16 37 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 38 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.08 1.93 6.86 -2.39 -0.02 1.91 16 41 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.05 1.19 6.48 -2.38 -0.02 1.18 16 43 H 0.09 1.38 6.79 -2.38 -0.02 1.36 16 44 H 0.04 0.56 6.81 -2.39 -0.02 0.54 16 45 H 0.09 0.94 8.05 -2.39 -0.02 0.92 16 46 H 0.04 0.50 8.14 -2.39 -0.02 0.49 16 47 H 0.09 0.89 8.13 -2.39 -0.02 0.87 16 48 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.08 0.70 8.13 -2.39 -0.02 0.68 16 50 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 51 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 52 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 53 H 0.07 1.40 6.46 -2.39 -0.02 1.38 16 54 H 0.04 0.72 6.44 -2.39 -0.02 0.71 16 Total: -1.00 -75.25 416.16 -4.80 -80.05 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.85 Total: 18.41 kcal Atomic # 6 Polarization: -48.03 SS G_CDS: 6.23 Total: -41.80 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -9.37 Total: -108.29 kcal Atomic # 8 Polarization: -84.62 SS G_CDS: -4.24 Total: -88.86 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 95.40 SS G_CDS: -0.31 Total: 95.10 kcal Total: -75.25 -4.80 -80.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408028067.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.798 kcal (2) G-P(sol) polarization free energy of solvation -75.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds