Wall clock time and date at job start Tue Mar 31 2020 06:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36004 * 116.99739 * 2 1 4 4 C 1.38716 * 119.97095 * 179.97438 * 3 2 1 5 5 C 1.38089 * 120.02375 * 180.02562 * 4 3 2 6 6 C 1.38927 * 119.97145 * 0.26303 * 5 4 3 7 7 S 1.76205 * 120.02337 * 179.71944 * 6 5 4 8 8 C 1.81398 * 103.00101 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46991 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.47304 * 305.00348 * 9 8 7 11 11 O 1.42902 * 109.46783 * 65.00471 * 9 8 7 12 12 C 1.52999 * 109.46760 * 185.00090 * 9 8 7 13 13 O 1.42902 * 109.46879 * 175.00032 * 12 9 8 14 14 C 1.35682 * 117.00060 * 179.97438 * 13 12 9 15 15 C 1.39305 * 119.81274 * 359.72723 * 14 13 12 16 16 C 1.36442 * 120.18119 * 179.75685 * 15 14 13 17 17 C 1.40834 * 119.80845 * 0.51679 * 16 15 14 18 18 C 1.41221 * 120.17753 * 179.71698 * 17 16 15 19 19 H 1.08002 * 119.99983 * 155.16361 * 18 17 16 20 20 C 1.39893 * 119.99800 * 335.16781 * 18 17 16 21 21 N 1.30878 * 120.00066 * 342.15743 * 20 18 17 22 22 Si 1.86800 * 119.99755 * 162.15840 * 20 18 17 23 23 H 1.48499 * 109.47295 * 94.65017 * 22 20 18 24 24 H 1.48498 * 109.46968 * 214.65656 * 22 20 18 25 25 H 1.48501 * 109.47235 * 334.65485 * 22 20 18 26 26 C 1.40826 * 119.64466 * 359.73845 * 17 16 15 27 27 C 1.36439 * 119.81113 * 0.02562 * 26 17 16 28 28 C 1.38917 * 119.95187 * 359.48390 * 6 5 4 29 29 C 1.38084 * 119.97417 * 0.51483 * 28 6 5 30 30 H 1.09003 * 109.47512 * 59.99818 * 1 2 3 31 31 H 1.09009 * 109.47230 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47467 * 299.99998 * 1 2 3 33 33 H 1.07994 * 119.99122 * 0.02562 * 4 3 2 34 34 H 1.07990 * 120.01504 * 179.97438 * 5 4 3 35 35 H 1.09004 * 109.47028 * 300.00430 * 8 7 6 36 36 H 1.09001 * 109.47054 * 60.00038 * 8 7 6 37 37 H 0.96696 * 114.00199 * 59.99731 * 11 9 8 38 38 H 1.08996 * 109.47327 * 294.99752 * 12 9 8 39 39 H 1.08996 * 109.47660 * 55.00380 * 12 9 8 40 40 H 1.07998 * 119.91374 * 0.02562 * 15 14 13 41 41 H 1.07996 * 120.09374 * 180.25268 * 16 15 14 42 42 H 0.97005 * 119.99643 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.09634 * 179.97438 * 26 17 16 44 44 H 1.07997 * 119.90958 * 179.97438 * 27 26 17 45 45 H 1.07998 * 120.01317 * 180.22770 * 28 6 5 46 46 H 1.08007 * 119.98763 * 179.72466 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4317 1.2838 0.0005 5 6 4.0597 2.5136 0.0011 6 6 3.3035 3.6790 0.0066 7 16 4.1034 5.2490 0.0148 8 6 2.7138 6.4150 0.0192 9 6 3.2503 7.8478 0.0272 10 1 3.9289 7.9771 0.8703 11 8 3.9518 8.1005 -1.1919 12 6 2.0833 8.8287 0.1567 13 8 2.5906 10.1588 0.2812 14 6 1.6794 11.1564 0.4057 15 6 0.3190 10.8564 0.4018 16 6 -0.6036 11.8532 0.5314 17 6 -0.1774 13.1895 0.6584 18 6 -1.1257 14.2279 0.7870 19 1 -0.8506 15.1537 1.2706 20 6 -2.4216 14.0575 0.2882 21 7 -2.6674 13.1156 -0.5866 22 14 -3.8010 15.1742 0.8709 23 1 -3.9574 16.3048 -0.0792 24 1 -5.0683 14.4029 0.9355 25 1 -3.4739 15.7027 2.2195 26 6 1.1996 13.4846 0.6560 27 6 2.1094 12.4756 0.5304 28 6 1.9162 3.6057 0.0007 29 6 1.2904 2.3748 0.0002 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 4.0193 0.3777 0.0005 34 1 5.1381 2.5695 0.0019 35 1 2.1058 6.2592 -0.8720 36 1 2.1045 6.2507 0.9080 37 1 3.4083 8.0037 -1.9858 38 1 1.4525 8.7619 -0.7297 39 1 1.4957 8.5798 1.0404 40 1 -0.0062 9.8316 0.3002 41 1 -1.6577 11.6186 0.5323 42 1 -3.5659 12.9977 -0.9327 43 1 1.5346 14.5068 0.7526 44 1 3.1657 12.7002 0.5279 45 1 1.3274 4.5111 0.0013 46 1 0.2119 2.3176 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408512825.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:09 Heat of formation + Delta-G solvation = -81.190163 kcal Electronic energy + Delta-G solvation = -27406.204519 eV Core-core repulsion = 23352.519292 eV Total energy + Delta-G solvation = -4053.685227 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.123 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.42482 -39.11595 -37.73955 -37.57126 -36.08059 -33.38507 -32.09860 -31.32894 -30.56748 -29.69402 -29.24027 -27.82341 -26.80916 -24.68097 -23.18210 -22.84205 -22.07624 -20.98035 -20.45621 -18.71413 -17.83088 -17.39274 -16.97588 -16.67508 -16.49635 -16.38716 -16.15176 -15.45338 -15.18080 -14.97570 -14.58383 -14.34523 -14.11335 -13.98931 -13.90931 -13.55074 -13.42931 -12.91595 -12.74838 -12.56766 -12.43083 -12.29173 -12.03599 -11.83910 -11.73394 -11.51449 -11.32892 -11.17916 -11.11093 -11.02238 -10.65951 -10.40288 -10.18338 -9.98847 -9.83351 -9.52363 -9.41590 -9.38390 -9.05410 -7.70322 -7.47083 -7.05873 -6.77407 -4.29394 0.88449 0.89662 1.17385 2.14835 2.72539 2.85642 2.92100 3.05077 3.09201 3.17889 3.27155 3.73725 3.91746 4.20748 4.31917 4.42578 4.57287 4.62358 4.64294 4.70928 4.71360 4.84363 4.95608 4.97797 5.04512 5.11711 5.17692 5.23282 5.52121 5.53426 5.62575 5.63214 5.85648 5.87943 5.89753 6.04065 6.23259 6.24067 6.66033 6.84783 6.93710 7.02482 7.23402 7.35613 7.51178 7.53813 7.85126 7.95961 8.10728 8.39099 8.60162 8.86027 8.94512 10.17566 Molecular weight = 360.12amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.001658 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.054607 B =16880.404819 C =18760.971246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.119 3.881 4 C -0.132 4.132 5 C -0.061 4.061 6 C -0.124 4.124 7 S -0.080 6.080 8 C -0.146 4.146 9 C 0.129 3.871 10 H 0.116 0.884 11 O -0.541 6.541 12 C 0.044 3.956 13 O -0.317 6.317 14 C -0.012 4.012 15 C -0.174 4.174 16 C -0.135 4.135 17 C 0.088 3.912 18 C -0.462 4.462 19 H 0.077 0.923 20 C 0.075 3.925 21 N -0.800 5.800 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.261 1.261 26 C -0.195 4.195 27 C -0.110 4.110 28 C -0.094 4.094 29 C -0.187 4.187 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.375 0.625 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.279 0.721 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.127 0.873 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.161 -23.655 0.001 24.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.072 3.928 4 C -0.153 4.153 5 C -0.085 4.085 6 C -0.237 4.237 7 S 0.164 5.836 8 C -0.295 4.295 9 C 0.068 3.932 10 H 0.134 0.866 11 O -0.346 6.346 12 C -0.035 4.035 13 O -0.232 6.232 14 C -0.055 4.055 15 C -0.193 4.193 16 C -0.154 4.154 17 C 0.085 3.915 18 C -0.492 4.492 19 H 0.096 0.904 20 C -0.142 4.142 21 N -0.427 5.427 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.185 1.185 26 C -0.215 4.215 27 C -0.129 4.129 28 C -0.118 4.118 29 C -0.207 4.207 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.222 0.778 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.138 0.862 42 H 0.090 0.910 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.145 0.855 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.934 -23.432 0.264 24.438 hybrid contribution -3.319 0.005 -0.233 3.327 sum 3.615 -23.427 0.031 23.704 Atomic orbital electron populations 1.23081 0.78229 1.04087 1.01499 1.86092 1.21508 1.26771 1.88770 1.19024 0.92381 0.84175 0.97262 1.20362 0.91369 0.98284 1.05250 1.20579 0.99773 0.89742 0.98356 1.21794 0.96214 0.97949 1.07757 1.85781 1.11580 0.93800 1.92417 1.24440 1.00380 0.98021 1.06632 1.21554 0.94121 0.87842 0.89681 0.86611 1.86669 1.40349 1.92567 1.15003 1.23052 0.95444 0.83593 1.01363 1.85858 1.33959 1.12987 1.90438 1.18579 0.87371 0.87351 1.12184 1.20576 0.92270 0.98344 1.08114 1.20925 0.98707 0.91949 1.03842 1.17605 0.91368 0.92692 0.89811 1.19477 0.94718 1.01318 1.33728 0.90447 1.25881 0.99962 0.95533 0.92812 1.69841 1.22558 1.29373 1.20880 0.86332 0.79854 0.80329 0.80401 1.19605 1.20137 1.18454 1.20612 0.93180 0.96699 1.11017 1.19623 0.98220 0.89899 1.05157 1.21005 0.92917 0.97917 0.99964 1.21155 1.00137 0.91945 1.07511 0.92543 0.88107 0.92547 0.84632 0.84644 0.88789 0.88145 0.77790 0.92563 0.92159 0.88980 0.86182 0.91019 0.88132 0.88402 0.85520 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.74 10.50 -19.75 -0.21 -2.95 16 3 C 0.12 1.10 6.69 -39.23 -0.26 0.83 16 4 C -0.13 -1.16 9.98 -39.46 -0.39 -1.56 16 5 C -0.06 -0.55 9.79 -39.38 -0.39 -0.94 16 6 C -0.12 -1.24 6.11 -39.07 -0.24 -1.48 16 7 S -0.08 -0.84 21.70 -107.50 -2.33 -3.17 16 8 C -0.15 -1.37 3.99 37.16 0.15 -1.22 16 9 C 0.13 1.55 3.24 -26.73 -0.09 1.47 16 10 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 11 O -0.54 -7.07 13.06 -40.08 -0.52 -7.60 16 12 C 0.04 0.65 4.37 37.16 0.16 0.81 16 13 O -0.32 -6.29 10.09 -23.60 -0.24 -6.53 16 14 C -0.01 -0.27 6.71 -38.79 -0.26 -0.53 16 15 C -0.17 -3.98 8.96 -39.83 -0.36 -4.34 16 16 C -0.13 -3.44 8.64 -39.25 -0.34 -3.78 16 17 C 0.09 2.31 5.57 -106.80 -0.60 1.72 16 18 C -0.46 -12.15 9.04 -37.83 -0.34 -12.49 16 19 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 20 C 0.07 1.86 5.13 -17.34 -0.09 1.77 16 21 N -0.80 -20.44 10.97 55.54 0.61 -19.83 16 22 Si 0.91 18.45 29.59 -169.99 -5.03 13.42 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 24 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 26 C -0.20 -4.78 9.74 -39.25 -0.38 -5.17 16 27 C -0.11 -2.55 9.92 -39.83 -0.40 -2.95 16 28 C -0.09 -0.87 9.36 -39.39 -0.37 -1.24 16 29 C -0.19 -1.62 9.03 -39.46 -0.36 -1.98 16 30 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 31 H 0.10 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 33 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.09 0.77 7.74 -51.92 -0.40 0.36 16 36 H 0.10 0.84 7.75 -51.92 -0.40 0.44 16 37 H 0.37 3.66 9.05 45.56 0.41 4.07 16 38 H 0.06 0.79 7.63 -51.93 -0.40 0.39 16 39 H 0.06 0.84 7.66 -51.93 -0.40 0.44 16 40 H 0.09 1.83 6.27 -52.49 -0.33 1.50 16 41 H 0.12 3.14 6.18 -52.49 -0.32 2.82 16 42 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 43 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 44 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 45 H 0.13 1.02 5.87 -52.49 -0.31 0.71 16 46 H 0.13 0.87 6.29 -52.48 -0.33 0.54 16 LS Contribution 397.79 15.07 5.99 5.99 Total: -1.00 -30.72 397.79 -10.64 -41.36 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -5.36 Total: 9.23 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: -3.55 Total: -29.94 kcal Atomic # 7 Polarization: -20.44 SS G_CDS: 0.61 Total: -19.83 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.97 Total: -17.07 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -2.33 Total: -3.17 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.72 -10.64 -41.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408512825.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.828 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds