Wall clock time and date at job start Tue Mar 31 2020 06:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36004 * 116.99739 * 2 1 4 4 C 1.38716 * 119.97095 * 179.97438 * 3 2 1 5 5 C 1.38089 * 120.02375 * 180.02562 * 4 3 2 6 6 C 1.38927 * 119.97145 * 0.26303 * 5 4 3 7 7 S 1.76205 * 120.02337 * 179.71944 * 6 5 4 8 8 C 1.81398 * 103.00101 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46991 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.47304 * 305.00348 * 9 8 7 11 11 O 1.42902 * 109.46783 * 65.00471 * 9 8 7 12 12 C 1.52999 * 109.46760 * 185.00090 * 9 8 7 13 13 O 1.42902 * 109.46879 * 175.00032 * 12 9 8 14 14 C 1.35682 * 117.00060 * 179.97438 * 13 12 9 15 15 C 1.39305 * 119.81274 * 359.72723 * 14 13 12 16 16 C 1.36442 * 120.18119 * 179.75685 * 15 14 13 17 17 C 1.40834 * 119.80845 * 0.51679 * 16 15 14 18 18 C 1.41221 * 120.17753 * 179.71698 * 17 16 15 19 19 H 1.08002 * 119.99983 * 155.16361 * 18 17 16 20 20 C 1.39893 * 119.99800 * 335.16781 * 18 17 16 21 21 N 1.30878 * 120.00066 * 342.15743 * 20 18 17 22 22 Si 1.86800 * 119.99755 * 162.15840 * 20 18 17 23 23 H 1.48499 * 109.47295 * 94.65017 * 22 20 18 24 24 H 1.48498 * 109.46968 * 214.65656 * 22 20 18 25 25 H 1.48501 * 109.47235 * 334.65485 * 22 20 18 26 26 C 1.40826 * 119.64466 * 359.73845 * 17 16 15 27 27 C 1.36439 * 119.81113 * 0.02562 * 26 17 16 28 28 C 1.38917 * 119.95187 * 359.48390 * 6 5 4 29 29 C 1.38084 * 119.97417 * 0.51483 * 28 6 5 30 30 H 1.09003 * 109.47512 * 59.99818 * 1 2 3 31 31 H 1.09009 * 109.47230 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47467 * 299.99998 * 1 2 3 33 33 H 1.07994 * 119.99122 * 0.02562 * 4 3 2 34 34 H 1.07990 * 120.01504 * 179.97438 * 5 4 3 35 35 H 1.09004 * 109.47028 * 300.00430 * 8 7 6 36 36 H 1.09001 * 109.47054 * 60.00038 * 8 7 6 37 37 H 0.96696 * 114.00199 * 59.99731 * 11 9 8 38 38 H 1.08996 * 109.47327 * 294.99752 * 12 9 8 39 39 H 1.08996 * 109.47660 * 55.00380 * 12 9 8 40 40 H 1.07998 * 119.91374 * 0.02562 * 15 14 13 41 41 H 1.07996 * 120.09374 * 180.25268 * 16 15 14 42 42 H 0.97005 * 119.99643 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.09634 * 179.97438 * 26 17 16 44 44 H 1.07997 * 119.90958 * 179.97438 * 27 26 17 45 45 H 1.07998 * 120.01317 * 180.22770 * 28 6 5 46 46 H 1.08007 * 119.98763 * 179.72466 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4317 1.2838 0.0005 5 6 4.0597 2.5136 0.0011 6 6 3.3035 3.6790 0.0066 7 16 4.1034 5.2490 0.0148 8 6 2.7138 6.4150 0.0192 9 6 3.2503 7.8478 0.0272 10 1 3.9289 7.9771 0.8703 11 8 3.9518 8.1005 -1.1919 12 6 2.0833 8.8287 0.1567 13 8 2.5906 10.1588 0.2812 14 6 1.6794 11.1564 0.4057 15 6 0.3190 10.8564 0.4018 16 6 -0.6036 11.8532 0.5314 17 6 -0.1774 13.1895 0.6584 18 6 -1.1257 14.2279 0.7870 19 1 -0.8506 15.1537 1.2706 20 6 -2.4216 14.0575 0.2882 21 7 -2.6674 13.1156 -0.5866 22 14 -3.8010 15.1742 0.8709 23 1 -3.9574 16.3048 -0.0792 24 1 -5.0683 14.4029 0.9355 25 1 -3.4739 15.7027 2.2195 26 6 1.1996 13.4846 0.6560 27 6 2.1094 12.4756 0.5304 28 6 1.9162 3.6057 0.0007 29 6 1.2904 2.3748 0.0002 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 4.0193 0.3777 0.0005 34 1 5.1381 2.5695 0.0019 35 1 2.1058 6.2592 -0.8720 36 1 2.1045 6.2507 0.9080 37 1 3.4083 8.0037 -1.9858 38 1 1.4525 8.7619 -0.7297 39 1 1.4957 8.5798 1.0404 40 1 -0.0062 9.8316 0.3002 41 1 -1.6577 11.6186 0.5323 42 1 -3.5659 12.9977 -0.9327 43 1 1.5346 14.5068 0.7526 44 1 3.1657 12.7002 0.5279 45 1 1.3274 4.5111 0.0013 46 1 0.2119 2.3176 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408512825.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:08 Heat of formation + Delta-G solvation = -98.261959 kcal Electronic energy + Delta-G solvation = -27406.944808 eV Core-core repulsion = 23352.519292 eV Total energy + Delta-G solvation = -4054.425515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.123 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.03217 -40.66142 -38.91138 -38.34976 -37.61160 -35.21056 -32.96200 -32.12665 -31.53475 -31.21405 -30.99404 -28.41745 -27.90735 -26.44196 -23.99144 -23.63310 -23.13443 -22.61489 -22.06998 -19.36048 -19.26922 -18.84139 -18.28839 -17.71502 -17.53409 -17.14626 -16.90466 -16.67676 -16.28377 -15.84632 -15.76676 -15.61999 -15.57543 -15.02966 -14.72040 -14.58726 -14.29481 -14.20663 -14.14365 -13.83448 -13.57607 -13.48986 -13.18982 -13.08863 -12.88576 -12.76481 -12.70063 -12.31543 -12.26257 -12.18575 -11.89150 -11.69750 -11.60109 -11.32135 -11.17069 -11.11025 -10.86182 -10.18585 -10.04752 -9.57163 -8.91367 -8.61057 -8.21434 -6.22998 0.20366 0.24434 0.40254 0.93261 1.04111 1.39585 1.40685 1.48939 1.55254 2.22524 2.33862 2.47671 2.60799 2.71823 3.33436 3.68933 3.69719 3.71901 3.79067 3.83636 3.86566 4.12643 4.16632 4.27457 4.28264 4.35960 4.36856 4.41023 4.45870 4.46561 4.55043 4.71394 4.82097 4.89614 4.91052 5.00243 5.01203 5.14868 5.22711 5.24302 5.36486 5.51770 5.60232 5.65705 5.96183 6.05878 6.23352 6.36052 6.55209 6.70857 6.78984 6.94879 7.09365 8.35968 Molecular weight = 360.12amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.001658 C = 0.001492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.054607 B =16880.404819 C =18760.971246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.110 3.890 4 C -0.141 4.141 5 C -0.067 4.067 6 C -0.136 4.136 7 S -0.105 6.105 8 C -0.134 4.134 9 C 0.140 3.860 10 H 0.106 0.894 11 O -0.559 6.559 12 C 0.035 3.965 13 O -0.328 6.328 14 C 0.000 4.000 15 C -0.174 4.174 16 C -0.155 4.155 17 C 0.053 3.947 18 C -0.500 4.500 19 H 0.075 0.925 20 C 0.035 3.965 21 N -0.831 5.831 22 Si 0.980 3.020 23 H -0.264 1.264 24 H -0.266 1.266 25 H -0.260 1.260 26 C -0.205 4.205 27 C -0.122 4.122 28 C -0.101 4.101 29 C -0.191 4.191 30 H 0.063 0.937 31 H 0.119 0.881 32 H 0.063 0.937 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.388 0.612 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.287 0.713 43 H 0.108 0.892 44 H 0.117 0.883 45 H 0.139 0.861 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.363 -25.004 0.012 25.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.063 3.937 4 C -0.161 4.161 5 C -0.091 4.091 6 C -0.249 4.249 7 S 0.138 5.862 8 C -0.282 4.282 9 C 0.079 3.921 10 H 0.124 0.876 11 O -0.366 6.366 12 C -0.042 4.042 13 O -0.243 6.243 14 C -0.044 4.044 15 C -0.193 4.193 16 C -0.174 4.174 17 C 0.051 3.949 18 C -0.530 4.530 19 H 0.093 0.907 20 C -0.179 4.179 21 N -0.458 5.458 22 Si 0.801 3.199 23 H -0.189 1.189 24 H -0.190 1.190 25 H -0.184 1.184 26 C -0.225 4.225 27 C -0.141 4.141 28 C -0.125 4.125 29 C -0.212 4.212 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.082 0.918 33 H 0.166 0.834 34 H 0.163 0.837 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.238 0.762 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.140 0.860 41 H 0.125 0.875 42 H 0.098 0.902 43 H 0.126 0.874 44 H 0.135 0.865 45 H 0.156 0.844 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.144 -24.810 0.263 25.560 hybrid contribution -2.960 0.230 -0.276 2.982 sum 3.184 -24.579 -0.013 24.784 Atomic orbital electron populations 1.23345 0.76518 1.05656 1.02187 1.86076 1.23362 1.26598 1.88653 1.19233 0.92744 0.84683 0.97065 1.20584 0.91709 0.98708 1.05072 1.20763 1.00397 0.89733 0.98176 1.21844 0.96664 0.97553 1.08834 1.85847 1.12617 0.94858 1.92839 1.24311 1.00023 0.95751 1.08145 1.21393 0.92876 0.88624 0.89204 0.87578 1.86639 1.41341 1.92753 1.15893 1.23416 0.96985 0.81417 1.02397 1.85853 1.33861 1.14588 1.90038 1.18682 0.87670 0.88070 1.10001 1.20808 0.92079 0.99278 1.07108 1.20913 0.98630 0.92436 1.05437 1.17968 0.92383 0.93445 0.91068 1.19715 0.96220 1.01631 1.35390 0.90718 1.26700 1.01829 0.97078 0.92316 1.69883 1.23548 1.30800 1.21522 0.85225 0.76627 0.78343 0.79708 1.18900 1.19036 1.18387 1.20795 0.92949 0.97662 1.11098 1.19895 0.99042 0.90220 1.04920 1.21206 0.92780 0.98675 0.99821 1.21386 1.01178 0.91558 1.07032 0.91809 0.86246 0.91834 0.83354 0.83732 0.87144 0.86793 0.76229 0.91501 0.90903 0.86038 0.87484 0.90242 0.87375 0.86507 0.84370 0.83262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.27 10.50 -93.60 -0.98 -6.25 16 3 C 0.11 1.88 6.69 22.50 0.15 2.03 16 4 C -0.14 -2.32 9.98 22.35 0.22 -2.10 16 5 C -0.07 -1.16 9.79 22.40 0.22 -0.94 16 6 C -0.14 -2.55 6.11 22.60 0.14 -2.41 16 7 S -0.11 -2.07 21.70 -56.49 -1.23 -3.29 16 8 C -0.13 -2.21 3.99 71.98 0.29 -1.92 16 9 C 0.14 3.11 3.24 30.59 0.10 3.21 16 10 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 11 O -0.56 -13.71 13.06 -144.34 -1.88 -15.59 16 12 C 0.04 0.96 4.37 71.98 0.31 1.27 16 13 O -0.33 -12.45 10.09 -85.36 -0.86 -13.31 16 14 C 0.00 -0.02 6.71 22.78 0.15 0.14 16 15 C -0.17 -7.81 8.96 22.11 0.20 -7.61 16 16 C -0.15 -7.99 8.64 22.49 0.19 -7.79 16 17 C 0.05 2.89 5.57 -21.28 -0.12 2.77 16 18 C -0.50 -26.91 9.04 23.40 0.21 -26.70 16 19 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 20 C 0.03 1.73 5.13 85.24 0.44 2.17 16 21 N -0.83 -42.91 10.97 21.82 0.24 -42.67 16 22 Si 0.98 37.87 29.59 68.60 2.03 39.90 16 23 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 24 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 25 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 26 C -0.21 -10.20 9.74 22.48 0.22 -9.98 16 27 C -0.12 -5.61 9.92 22.11 0.22 -5.39 16 28 C -0.10 -1.69 9.36 22.40 0.21 -1.48 16 29 C -0.19 -2.97 9.03 22.35 0.20 -2.77 16 30 H 0.06 0.43 7.66 -2.39 -0.02 0.41 16 31 H 0.12 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.06 0.43 7.66 -2.39 -0.02 0.41 16 33 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.14 2.09 8.06 -2.92 -0.02 2.07 16 35 H 0.11 1.48 7.74 -2.39 -0.02 1.46 16 36 H 0.11 1.60 7.75 -2.39 -0.02 1.58 16 37 H 0.39 6.86 9.05 -74.06 -0.67 6.19 16 38 H 0.07 1.69 7.63 -2.39 -0.02 1.67 16 39 H 0.07 1.82 7.66 -2.39 -0.02 1.80 16 40 H 0.12 4.59 6.27 -2.91 -0.02 4.57 16 41 H 0.11 5.73 6.18 -2.91 -0.02 5.71 16 42 H 0.29 13.35 8.30 -92.70 -0.77 12.58 16 43 H 0.11 5.02 8.06 -2.91 -0.02 4.99 16 44 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 45 H 0.14 1.88 5.87 -2.91 -0.02 1.86 16 46 H 0.15 1.64 6.29 -2.91 -0.02 1.62 16 Total: -1.00 -66.44 397.79 2.13 -64.31 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: 0.34 Total: 33.16 kcal Atomic # 6 Polarization: -60.73 SS G_CDS: 4.47 Total: -56.26 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.24 Total: -42.67 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -3.73 Total: -35.15 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Atomic # 16 Polarization: -2.07 SS G_CDS: -1.23 Total: -3.29 kcal Total: -66.44 2.13 -64.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408512825.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.950 kcal (2) G-P(sol) polarization free energy of solvation -66.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds