Wall clock time and date at job start Tue Mar 31 2020 06:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46714 * 2 1 4 4 C 1.53001 * 109.46899 * 240.00199 * 2 1 3 5 5 O 1.45198 * 109.47264 * 120.00110 * 2 1 3 6 6 C 1.34634 * 117.00020 * 59.99873 * 5 2 1 7 7 O 1.21511 * 119.99925 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00005 * 179.97438 * 6 5 2 9 9 C 1.47067 * 136.05808 * 0.05402 * 8 6 5 10 10 C 1.53491 * 87.98596 * 207.08543 * 9 8 6 11 11 C 1.47062 * 136.05841 * 180.02562 * 8 6 5 12 12 H 1.09003 * 113.46798 * 267.74825 * 11 8 6 13 13 C 1.50700 * 113.47026 * 38.13304 * 11 8 6 14 14 O 1.21281 * 119.99919 * 0.21674 * 13 11 8 15 15 N 1.34777 * 119.99954 * 180.49662 * 13 11 8 16 16 C 1.46504 * 119.99581 * 179.97438 * 15 13 11 17 17 H 1.09003 * 109.47124 * 35.00654 * 16 15 13 18 18 C 1.50698 * 109.47609 * 275.00025 * 16 15 13 19 19 H 1.08000 * 119.99764 * 325.01246 * 18 16 15 20 20 C 1.37877 * 119.99966 * 145.00557 * 18 16 15 21 21 N 1.31517 * 119.99707 * 184.94447 * 20 18 16 22 22 Si 1.86793 * 120.00135 * 4.94712 * 20 18 16 23 23 H 1.48508 * 109.47299 * 84.63064 * 22 20 18 24 24 H 1.48505 * 109.47000 * 204.63095 * 22 20 18 25 25 H 1.48500 * 109.46954 * 324.62924 * 22 20 18 26 26 C 1.50708 * 109.46842 * 154.99933 * 16 15 13 27 27 C 1.38228 * 119.99685 * 45.19224 * 26 16 15 28 28 C 1.38241 * 120.00047 * 179.78770 * 27 26 16 29 29 C 1.38236 * 119.99696 * 0.45843 * 28 27 26 30 30 C 1.38237 * 119.99806 * 359.77248 * 29 28 27 31 31 C 1.38232 * 119.99861 * 225.46557 * 26 16 15 32 32 H 1.09003 * 109.47444 * 299.99732 * 1 2 3 33 33 H 1.08998 * 109.47582 * 60.00518 * 1 2 3 34 34 H 1.09008 * 109.47044 * 179.97438 * 1 2 3 35 35 H 1.08996 * 109.46790 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.46673 * 300.00039 * 3 2 1 37 37 H 1.09000 * 109.47196 * 60.00421 * 3 2 1 38 38 H 1.08999 * 109.47208 * 299.99362 * 4 2 1 39 39 H 1.09001 * 109.47290 * 60.00191 * 4 2 1 40 40 H 1.09006 * 109.46597 * 179.97438 * 4 2 1 41 41 H 1.09002 * 113.46757 * 321.86709 * 9 8 6 42 42 H 1.08995 * 113.46993 * 92.24154 * 9 8 6 43 43 H 1.09004 * 114.20750 * 220.34384 * 10 9 8 44 44 H 1.09007 * 114.20604 * 87.52001 * 10 9 8 45 45 H 0.96990 * 120.00496 * 0.02562 * 15 13 11 46 46 H 0.96995 * 120.00058 * 180.02562 * 21 20 18 47 47 H 1.08003 * 120.00453 * 359.97438 * 27 26 16 48 48 H 1.08000 * 120.00325 * 180.25083 * 28 27 26 49 49 H 1.08001 * 120.00008 * 179.78839 * 29 28 27 50 50 H 1.08000 * 119.99812 * 179.97438 * 30 29 28 51 51 H 1.08000 * 120.00256 * 359.97438 * 31 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5035 8 7 2.0681 -2.6657 2.4166 9 6 2.8925 -2.3862 3.6020 10 6 3.2456 -3.8794 3.6416 11 6 1.8968 -4.0346 2.9259 12 1 1.0528 -4.1419 3.6072 13 6 1.9089 -5.0835 1.8438 14 8 2.0548 -4.7574 0.6848 15 7 1.7520 -6.3833 2.1635 16 6 1.7632 -7.4029 1.1115 17 1 2.4667 -7.1121 0.3313 18 6 0.3827 -7.5307 0.5210 19 1 -0.4869 -7.4098 1.1499 20 6 0.2298 -7.8019 -0.8222 21 7 -0.9714 -7.8172 -1.3573 22 14 1.7288 -8.1474 -1.8818 23 1 2.0931 -9.5829 -1.7711 24 1 1.4197 -7.8230 -3.2976 25 1 2.8654 -7.3112 -1.4191 26 6 2.1830 -8.7259 1.6986 27 6 1.6395 -9.1545 2.8952 28 6 2.0212 -10.3701 3.4316 29 6 2.9534 -11.1526 2.7762 30 6 3.5004 -10.7217 1.5820 31 6 3.1156 -9.5081 1.0435 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 3.1299 1.4426 -0.0005 36 1 1.6765 1.9563 -0.8900 37 1 1.6766 1.9564 0.8900 38 1 1.6767 -1.7489 -1.2493 39 1 1.6767 -0.2073 -2.1393 40 1 3.1300 -0.7208 -1.2495 41 1 3.7478 -1.7433 3.3941 42 1 2.3146 -2.0528 4.4638 43 1 3.2714 -4.3062 4.6443 44 1 4.1082 -4.1510 3.0329 45 1 1.6309 -6.6438 3.0899 46 1 -1.0791 -8.0084 -2.3022 47 1 0.9144 -8.5412 3.4095 48 1 1.5936 -10.7069 4.3644 49 1 3.2541 -12.1007 3.1969 50 1 4.2290 -11.3329 1.0701 51 1 3.5431 -9.1713 0.1106 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408514267.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:55 Heat of formation + Delta-G solvation = -36.484019 kcal Electronic energy + Delta-G solvation = -33533.999264 eV Core-core repulsion = 29207.625616 eV Total energy + Delta-G solvation = -4326.373648 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.188 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.84884 -39.67064 -38.83667 -37.47123 -36.15892 -34.49147 -33.85023 -32.29740 -30.82753 -30.31721 -29.58595 -27.66413 -27.37804 -27.24794 -26.27295 -23.14329 -23.01459 -22.17682 -21.25314 -20.40847 -19.61415 -18.90216 -17.91226 -17.29035 -17.04199 -16.45516 -16.09860 -15.58872 -15.38727 -14.92556 -14.74028 -14.43957 -14.23680 -14.12486 -13.98361 -13.72957 -13.23841 -13.05482 -12.92793 -12.79735 -12.60083 -12.57393 -12.48124 -12.30618 -12.10418 -11.90379 -11.80483 -11.78150 -11.68928 -11.33908 -11.18829 -11.14411 -11.08410 -10.83805 -10.62069 -10.41504 -10.16454 -9.73204 -9.65423 -9.61669 -9.06692 -8.66627 -8.48432 -8.36838 -8.21618 -7.73997 -6.13525 -4.13501 1.94284 1.97384 2.07456 3.23588 3.30172 3.36652 3.38389 3.41097 3.86242 4.05714 4.23345 4.39588 4.44121 4.78708 4.80358 4.84043 4.97326 5.03522 5.14429 5.20586 5.29209 5.34485 5.41627 5.42055 5.45876 5.55557 5.56454 5.56845 5.59401 5.72332 5.77500 5.82339 5.87178 5.96333 6.00587 6.04213 6.08733 6.13755 6.42246 6.45330 6.56310 6.58357 6.72161 6.74704 7.00065 7.02332 7.28153 7.49062 7.52607 7.60924 7.88824 8.34434 8.44704 8.73891 8.89145 9.16783 9.47817 10.98469 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.012094 B = 0.003224 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.641488 B = 8682.642469 C =10142.171601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.137 4.137 4 C -0.185 4.185 5 O -0.369 6.369 6 C 0.674 3.326 7 O -0.520 6.520 8 N -0.621 5.621 9 C 0.107 3.893 10 C -0.141 4.141 11 C 0.136 3.864 12 H 0.113 0.887 13 C 0.498 3.502 14 O -0.498 6.498 15 N -0.711 5.711 16 C 0.264 3.736 17 H 0.067 0.933 18 C -0.508 4.508 19 H 0.078 0.922 20 C 0.087 3.913 21 N -0.884 5.884 22 Si 0.866 3.134 23 H -0.270 1.270 24 H -0.286 1.286 25 H -0.257 1.257 26 C -0.046 4.046 27 C -0.116 4.116 28 C -0.120 4.120 29 C -0.147 4.147 30 C -0.117 4.117 31 C -0.131 4.131 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.382 0.618 46 H 0.267 0.733 47 H 0.117 0.883 48 H 0.113 0.887 49 H 0.111 0.889 50 H 0.112 0.888 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.663 10.438 12.357 18.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.101 3.899 3 C -0.194 4.194 4 C -0.242 4.242 5 O -0.285 6.285 6 C 0.430 3.570 7 O -0.404 6.404 8 N -0.365 5.365 9 C -0.016 4.016 10 C -0.179 4.179 11 C 0.029 3.971 12 H 0.131 0.869 13 C 0.280 3.720 14 O -0.370 6.370 15 N -0.362 5.362 16 C 0.162 3.838 17 H 0.084 0.916 18 C -0.546 4.546 19 H 0.096 0.904 20 C -0.118 4.118 21 N -0.519 5.519 22 Si 0.693 3.307 23 H -0.195 1.195 24 H -0.212 1.212 25 H -0.182 1.182 26 C -0.047 4.047 27 C -0.134 4.134 28 C -0.138 4.138 29 C -0.165 4.165 30 C -0.135 4.135 31 C -0.150 4.150 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.215 0.785 46 H 0.076 0.924 47 H 0.135 0.865 48 H 0.131 0.869 49 H 0.129 0.871 50 H 0.130 0.870 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.319 10.702 10.725 17.788 hybrid contribution 0.254 -0.421 -0.358 0.608 sum 9.573 10.281 10.367 17.459 Atomic orbital electron populations 1.22518 0.94144 1.05393 1.02021 1.22005 0.94284 0.91173 0.82478 1.21831 1.02026 0.92797 1.02773 1.22532 1.01356 1.04247 0.96107 1.86233 1.72258 1.23762 1.46219 1.17222 0.78858 0.79850 0.81101 1.91054 1.39138 1.69148 1.41086 1.47792 1.55372 1.12691 1.20667 1.22917 0.94270 0.97093 0.87363 1.23456 0.96535 0.96158 1.01730 1.22675 0.99436 0.81455 0.93517 0.86943 1.20122 0.78744 0.83331 0.89793 1.90788 1.46613 1.80340 1.19293 1.46318 1.73448 1.06166 1.10304 1.18197 0.98466 0.80605 0.86552 0.91567 1.21027 0.90355 1.48818 0.94374 0.90392 1.24905 0.95718 0.93662 0.97516 1.69878 1.21849 1.47221 1.12993 0.87074 0.84446 0.78972 0.80199 1.19506 1.21244 1.18155 1.20714 0.91966 0.98985 0.93048 1.20838 0.99829 0.96479 0.96272 1.21025 0.98016 0.94977 0.99747 1.20893 0.99381 0.99791 0.96479 1.20980 1.00207 0.96163 0.96176 1.20971 0.98444 0.95508 1.00038 0.92474 0.91306 0.89091 0.91685 0.90322 0.91741 0.88640 0.91461 0.92424 0.90034 0.89528 0.88076 0.88100 0.78509 0.92358 0.86522 0.86896 0.87090 0.86977 0.87206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 8.37 37.16 0.31 -2.24 16 2 C 0.14 1.92 1.13 -90.62 -0.10 1.82 16 3 C -0.14 -1.36 8.85 37.16 0.33 -1.03 16 4 C -0.19 -2.80 8.37 37.16 0.31 -2.49 16 5 O -0.37 -5.92 9.91 -40.31 -0.40 -6.32 16 6 C 0.67 12.69 7.83 54.06 0.42 13.11 16 7 O -0.52 -11.98 10.50 -26.57 -0.28 -12.26 16 8 N -0.62 -9.78 3.48 -184.68 -0.64 -10.42 16 9 C 0.11 1.04 8.64 -8.52 -0.07 0.97 16 10 C -0.14 -1.35 8.01 -26.23 -0.21 -1.56 16 11 C 0.14 1.97 4.46 -73.57 -0.33 1.64 16 12 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 13 C 0.50 10.18 7.27 -10.99 -0.08 10.10 16 14 O -0.50 -12.98 13.92 -16.22 -0.23 -13.21 16 15 N -0.71 -13.88 5.01 -56.06 -0.28 -14.16 16 16 C 0.26 6.20 1.82 -70.23 -0.13 6.07 16 17 H 0.07 1.73 4.38 -51.93 -0.23 1.50 16 18 C -0.51 -14.37 9.06 -34.44 -0.31 -14.68 16 19 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 20 C 0.09 2.60 5.47 -17.82 -0.10 2.50 16 21 N -0.88 -27.79 13.96 55.43 0.77 -27.02 16 22 Si 0.87 22.58 25.09 -169.99 -4.26 18.31 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 25 H -0.26 -6.63 6.06 56.52 0.34 -6.29 16 26 C -0.05 -0.94 4.86 -104.62 -0.51 -1.45 16 27 C -0.12 -2.04 8.94 -39.58 -0.35 -2.40 16 28 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 29 C -0.15 -2.23 10.05 -39.58 -0.40 -2.63 16 30 C -0.12 -1.95 10.05 -39.58 -0.40 -2.35 16 31 C -0.13 -2.58 8.83 -39.58 -0.35 -2.93 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.60 5.88 -51.92 -0.31 1.30 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.09 1.87 5.88 -51.93 -0.31 1.56 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.10 1.09 8.11 -51.92 -0.42 0.67 16 45 H 0.38 5.89 7.18 -40.82 -0.29 5.60 16 46 H 0.27 7.91 8.31 -40.82 -0.34 7.57 16 47 H 0.12 1.89 7.25 -52.48 -0.38 1.51 16 48 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 49 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 50 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 51 H 0.11 2.21 6.33 -52.49 -0.33 1.88 16 LS Contribution 409.34 15.07 6.17 6.17 Total: -1.00 -38.71 409.34 -9.31 -48.03 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -7.80 Total: 10.65 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -2.36 Total: 0.22 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.15 Total: -51.60 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.90 Total: -31.79 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.26 Total: 18.31 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -38.71 -9.31 -48.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408514267.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.544 kcal (2) G-P(sol) polarization free energy of solvation -38.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds