Wall clock time and date at job start Tue Mar 31 2020 06:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46714 * 2 1 4 4 C 1.53001 * 109.46899 * 240.00199 * 2 1 3 5 5 O 1.45198 * 109.47264 * 120.00110 * 2 1 3 6 6 C 1.34634 * 117.00020 * 59.99873 * 5 2 1 7 7 O 1.21511 * 119.99925 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00005 * 179.97438 * 6 5 2 9 9 C 1.47067 * 136.05808 * 0.05402 * 8 6 5 10 10 C 1.53491 * 87.98596 * 207.08543 * 9 8 6 11 11 C 1.47062 * 136.05841 * 180.02562 * 8 6 5 12 12 H 1.09003 * 113.46798 * 267.74825 * 11 8 6 13 13 C 1.50700 * 113.47026 * 38.13304 * 11 8 6 14 14 O 1.21281 * 119.99919 * 0.21674 * 13 11 8 15 15 N 1.34777 * 119.99954 * 180.49662 * 13 11 8 16 16 C 1.46504 * 119.99581 * 179.97438 * 15 13 11 17 17 H 1.09003 * 109.47124 * 35.00654 * 16 15 13 18 18 C 1.50698 * 109.47609 * 275.00025 * 16 15 13 19 19 H 1.08000 * 119.99764 * 325.01246 * 18 16 15 20 20 C 1.37877 * 119.99966 * 145.00557 * 18 16 15 21 21 N 1.31517 * 119.99707 * 184.94447 * 20 18 16 22 22 Si 1.86793 * 120.00135 * 4.94712 * 20 18 16 23 23 H 1.48508 * 109.47299 * 84.63064 * 22 20 18 24 24 H 1.48505 * 109.47000 * 204.63095 * 22 20 18 25 25 H 1.48500 * 109.46954 * 324.62924 * 22 20 18 26 26 C 1.50708 * 109.46842 * 154.99933 * 16 15 13 27 27 C 1.38228 * 119.99685 * 45.19224 * 26 16 15 28 28 C 1.38241 * 120.00047 * 179.78770 * 27 26 16 29 29 C 1.38236 * 119.99696 * 0.45843 * 28 27 26 30 30 C 1.38237 * 119.99806 * 359.77248 * 29 28 27 31 31 C 1.38232 * 119.99861 * 225.46557 * 26 16 15 32 32 H 1.09003 * 109.47444 * 299.99732 * 1 2 3 33 33 H 1.08998 * 109.47582 * 60.00518 * 1 2 3 34 34 H 1.09008 * 109.47044 * 179.97438 * 1 2 3 35 35 H 1.08996 * 109.46790 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.46673 * 300.00039 * 3 2 1 37 37 H 1.09000 * 109.47196 * 60.00421 * 3 2 1 38 38 H 1.08999 * 109.47208 * 299.99362 * 4 2 1 39 39 H 1.09001 * 109.47290 * 60.00191 * 4 2 1 40 40 H 1.09006 * 109.46597 * 179.97438 * 4 2 1 41 41 H 1.09002 * 113.46757 * 321.86709 * 9 8 6 42 42 H 1.08995 * 113.46993 * 92.24154 * 9 8 6 43 43 H 1.09004 * 114.20750 * 220.34384 * 10 9 8 44 44 H 1.09007 * 114.20604 * 87.52001 * 10 9 8 45 45 H 0.96990 * 120.00496 * 0.02562 * 15 13 11 46 46 H 0.96995 * 120.00058 * 180.02562 * 21 20 18 47 47 H 1.08003 * 120.00453 * 359.97438 * 27 26 16 48 48 H 1.08000 * 120.00325 * 180.25083 * 28 27 26 49 49 H 1.08001 * 120.00008 * 179.78839 * 29 28 27 50 50 H 1.08000 * 119.99812 * 179.97438 * 30 29 28 51 51 H 1.08000 * 120.00256 * 359.97438 * 31 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5035 8 7 2.0681 -2.6657 2.4166 9 6 2.8925 -2.3862 3.6020 10 6 3.2456 -3.8794 3.6416 11 6 1.8968 -4.0346 2.9259 12 1 1.0528 -4.1419 3.6072 13 6 1.9089 -5.0835 1.8438 14 8 2.0548 -4.7574 0.6848 15 7 1.7520 -6.3833 2.1635 16 6 1.7632 -7.4029 1.1115 17 1 2.4667 -7.1121 0.3313 18 6 0.3827 -7.5307 0.5210 19 1 -0.4869 -7.4098 1.1499 20 6 0.2298 -7.8019 -0.8222 21 7 -0.9714 -7.8172 -1.3573 22 14 1.7288 -8.1474 -1.8818 23 1 2.0931 -9.5829 -1.7711 24 1 1.4197 -7.8230 -3.2976 25 1 2.8654 -7.3112 -1.4191 26 6 2.1830 -8.7259 1.6986 27 6 1.6395 -9.1545 2.8952 28 6 2.0212 -10.3701 3.4316 29 6 2.9534 -11.1526 2.7762 30 6 3.5004 -10.7217 1.5820 31 6 3.1156 -9.5081 1.0435 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 3.1299 1.4426 -0.0005 36 1 1.6765 1.9563 -0.8900 37 1 1.6766 1.9564 0.8900 38 1 1.6767 -1.7489 -1.2493 39 1 1.6767 -0.2073 -2.1393 40 1 3.1300 -0.7208 -1.2495 41 1 3.7478 -1.7433 3.3941 42 1 2.3146 -2.0528 4.4638 43 1 3.2714 -4.3062 4.6443 44 1 4.1082 -4.1510 3.0329 45 1 1.6309 -6.6438 3.0899 46 1 -1.0791 -8.0084 -2.3022 47 1 0.9144 -8.5412 3.4095 48 1 1.5936 -10.7069 4.3644 49 1 3.2541 -12.1007 3.1969 50 1 4.2290 -11.3329 1.0701 51 1 3.5431 -9.1713 0.1106 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408514267.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:53 Heat of formation + Delta-G solvation = -65.017779 kcal Electronic energy + Delta-G solvation = -33535.236581 eV Core-core repulsion = 29207.625616 eV Total energy + Delta-G solvation = -4327.610965 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.188 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.09421 -41.01593 -40.19574 -38.95290 -37.50122 -36.27026 -35.02891 -34.43529 -32.38712 -31.65603 -30.73142 -29.25058 -28.43797 -28.32114 -27.72330 -24.81326 -24.19595 -23.54129 -22.44651 -21.71270 -21.22813 -20.17047 -19.34001 -19.08409 -18.52748 -17.75096 -17.42170 -17.13248 -16.80750 -16.51983 -16.16587 -15.86266 -15.63403 -15.45988 -15.16415 -15.00296 -14.97991 -14.55611 -14.28474 -14.14203 -14.04387 -13.91789 -13.72270 -13.51718 -13.33547 -13.16304 -13.05753 -12.91938 -12.87116 -12.72042 -12.66896 -12.51884 -12.35175 -12.24297 -12.10073 -11.96036 -11.81516 -11.52842 -11.38965 -11.02716 -10.88222 -10.59197 -9.83388 -9.78879 -9.69977 -9.37705 -8.43334 -6.44312 0.58830 0.61946 0.90697 1.14566 1.22273 1.27416 1.83633 1.89336 2.20907 2.45835 2.87288 2.96627 3.09029 3.28506 3.72928 3.75145 3.87881 3.90010 3.92303 4.08208 4.17611 4.19855 4.28551 4.31052 4.38408 4.47799 4.53399 4.55312 4.62171 4.65538 4.69027 4.76551 4.78908 4.84567 4.87146 4.91876 4.93188 5.08872 5.19143 5.21116 5.24116 5.27148 5.33169 5.41642 5.51256 5.66564 5.69552 5.70790 5.85929 6.18864 6.24985 6.56230 6.65453 6.87200 7.20754 7.40272 7.61713 8.73031 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.012094 B = 0.003224 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.641488 B = 8682.642469 C =10142.171601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.126 3.874 3 C -0.127 4.127 4 C -0.181 4.181 5 O -0.363 6.363 6 C 0.662 3.338 7 O -0.577 6.577 8 N -0.636 5.636 9 C 0.111 3.889 10 C -0.115 4.115 11 C 0.129 3.871 12 H 0.146 0.854 13 C 0.485 3.515 14 O -0.564 6.564 15 N -0.701 5.701 16 C 0.274 3.726 17 H 0.034 0.966 18 C -0.502 4.502 19 H 0.041 0.959 20 C 0.027 3.973 21 N -0.937 5.937 22 Si 0.920 3.080 23 H -0.241 1.241 24 H -0.293 1.293 25 H -0.264 1.264 26 C -0.073 4.073 27 C -0.122 4.122 28 C -0.111 4.111 29 C -0.133 4.133 30 C -0.119 4.119 31 C -0.156 4.156 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.042 0.958 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.126 0.874 43 H 0.155 0.845 44 H 0.085 0.915 45 H 0.405 0.595 46 H 0.265 0.735 47 H 0.125 0.875 48 H 0.153 0.847 49 H 0.153 0.847 50 H 0.140 0.860 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.130 10.191 16.536 22.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.090 3.910 3 C -0.184 4.184 4 C -0.238 4.238 5 O -0.279 6.279 6 C 0.418 3.582 7 O -0.465 6.465 8 N -0.380 5.380 9 C -0.009 4.009 10 C -0.153 4.153 11 C 0.023 3.977 12 H 0.163 0.837 13 C 0.270 3.730 14 O -0.441 6.441 15 N -0.353 5.353 16 C 0.170 3.830 17 H 0.052 0.948 18 C -0.541 4.541 19 H 0.060 0.940 20 C -0.172 4.172 21 N -0.577 5.577 22 Si 0.745 3.255 23 H -0.165 1.165 24 H -0.219 1.219 25 H -0.189 1.189 26 C -0.075 4.075 27 C -0.140 4.140 28 C -0.129 4.129 29 C -0.151 4.151 30 C -0.137 4.137 31 C -0.175 4.175 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.144 0.856 43 H 0.173 0.827 44 H 0.104 0.896 45 H 0.242 0.758 46 H 0.074 0.926 47 H 0.143 0.857 48 H 0.171 0.829 49 H 0.171 0.829 50 H 0.158 0.842 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.835 10.445 15.015 21.786 hybrid contribution -0.475 -0.380 -1.492 1.611 sum 11.360 10.065 13.523 20.328 Atomic orbital electron populations 1.22449 0.94401 1.02889 1.03799 1.22390 0.94386 0.93045 0.81217 1.21834 1.02410 0.89510 1.04621 1.22466 1.01393 1.01656 0.98329 1.86241 1.72083 1.22524 1.47009 1.17656 0.78561 0.80445 0.81527 1.91038 1.41709 1.70378 1.43413 1.48232 1.55340 1.13100 1.21303 1.23314 0.94235 0.97448 0.85930 1.23503 0.92514 0.96062 1.03207 1.23109 1.03876 0.78917 0.91837 0.83726 1.21353 0.76802 0.84302 0.90555 1.90769 1.49414 1.81367 1.22588 1.46024 1.72860 1.05707 1.10696 1.17764 0.94665 0.83300 0.87297 0.94801 1.21291 0.91830 1.46992 0.93971 0.94033 1.25659 0.98016 0.94391 0.99167 1.70017 1.23820 1.50659 1.13206 0.86233 0.81130 0.80168 0.77935 1.16480 1.21932 1.18936 1.20367 0.94582 0.97267 0.95237 1.21006 0.99721 0.97943 0.95355 1.21464 0.97196 0.93455 1.00791 1.21424 0.97635 1.00832 0.95182 1.21321 1.00476 0.94992 0.96888 1.21058 0.99293 0.97153 0.99978 0.91015 0.89113 0.93644 0.91054 0.87970 0.90356 0.93918 0.89058 0.92161 0.88921 0.85607 0.82698 0.89631 0.75845 0.92601 0.85722 0.82950 0.82908 0.84216 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.12 8.37 71.98 0.60 -4.52 16 2 C 0.13 3.56 1.13 -10.79 -0.01 3.55 16 3 C -0.13 -2.25 8.85 71.98 0.64 -1.61 16 4 C -0.18 -5.82 8.37 71.98 0.60 -5.22 16 5 O -0.36 -11.87 9.91 -55.43 -0.55 -12.42 16 6 C 0.66 26.22 7.83 129.79 1.02 27.24 16 7 O -0.58 -29.17 10.50 26.77 0.28 -28.89 16 8 N -0.64 -19.91 3.48 -968.61 -3.37 -23.28 16 9 C 0.11 1.81 8.64 83.17 0.72 2.53 16 10 C -0.12 -1.84 8.01 30.92 0.25 -1.59 16 11 C 0.13 3.61 4.46 41.03 0.18 3.80 16 12 H 0.15 3.12 8.14 -2.39 -0.02 3.10 16 13 C 0.48 20.71 7.27 87.66 0.64 21.35 16 14 O -0.56 -31.88 13.92 17.79 0.25 -31.63 16 15 N -0.70 -28.21 5.01 -449.67 -2.25 -30.46 16 16 C 0.27 13.49 1.82 43.50 0.08 13.57 16 17 H 0.03 1.90 4.38 -2.39 -0.01 1.89 16 18 C -0.50 -30.30 9.06 25.60 0.23 -30.07 16 19 H 0.04 2.72 8.06 -2.91 -0.02 2.70 16 20 C 0.03 1.71 5.47 84.65 0.46 2.18 16 21 N -0.94 -63.12 13.96 21.45 0.30 -62.82 16 22 Si 0.92 49.83 25.09 68.60 1.72 51.55 16 23 H -0.24 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.29 -15.91 7.11 99.48 0.71 -15.20 16 25 H -0.26 -14.44 6.06 99.48 0.60 -13.83 16 26 C -0.07 -3.02 4.86 -19.87 -0.10 -3.11 16 27 C -0.12 -4.08 8.94 22.27 0.20 -3.88 16 28 C -0.11 -2.93 10.05 22.27 0.22 -2.71 16 29 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 30 C -0.12 -3.58 10.05 22.27 0.22 -3.36 16 31 C -0.16 -6.07 8.83 22.27 0.20 -5.87 16 32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.04 1.75 5.88 -2.38 -0.01 1.73 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.04 1.85 5.88 -2.39 -0.01 1.84 16 39 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.09 1.69 8.11 -2.38 -0.02 1.67 16 45 H 0.41 12.29 7.18 -92.72 -0.67 11.62 16 46 H 0.26 16.86 8.31 -92.71 -0.77 16.09 16 47 H 0.12 3.84 7.25 -2.91 -0.02 3.82 16 48 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 49 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 50 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 51 H 0.09 3.85 6.33 -2.91 -0.02 3.83 16 Total: -1.00 -99.65 409.34 2.93 -96.72 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.18 Total: 32.08 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 6.38 Total: 9.14 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -5.32 Total: -116.56 kcal Atomic # 8 Polarization: -72.92 SS G_CDS: -0.02 Total: -72.94 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 1.72 Total: 51.55 kcal Total: -99.65 2.93 -96.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408514267.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.704 kcal (2) G-P(sol) polarization free energy of solvation -99.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds