Wall clock time and date at job start Tue Mar 31 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46684 * 2 1 4 4 C 1.50697 * 109.47189 * 120.00741 * 2 1 3 5 5 H 1.07999 * 120.00345 * 115.50351 * 4 2 1 6 6 C 1.37883 * 119.99864 * 295.50129 * 4 2 1 7 7 N 1.31518 * 119.99543 * 357.94175 * 6 4 2 8 8 Si 1.86793 * 120.00200 * 178.21862 * 6 4 2 9 9 H 1.48495 * 109.47411 * 264.74499 * 8 6 4 10 10 H 1.48500 * 109.47037 * 24.74385 * 8 6 4 11 11 H 1.48497 * 109.47248 * 144.74143 * 8 6 4 12 12 N 1.46504 * 109.47059 * 240.00558 * 2 1 3 13 13 C 1.46493 * 120.00168 * 299.99927 * 12 2 1 14 14 C 1.34774 * 119.99789 * 119.99700 * 12 2 1 15 15 O 1.21365 * 120.00315 * 5.62419 * 14 12 2 16 16 C 1.49309 * 119.99871 * 185.62695 * 14 12 2 17 17 O 1.21384 * 120.00304 * 5.58618 * 16 14 12 18 18 N 1.34785 * 119.99991 * 185.59098 * 16 14 12 19 19 C 1.38690 * 119.99902 * 180.02562 * 18 16 14 20 20 N 1.29664 * 125.29408 * 179.71712 * 19 18 16 21 21 C 1.32541 * 117.02456 * 179.77330 * 20 19 18 22 22 C 1.48170 * 122.33268 * 180.27208 * 21 20 19 23 23 C 1.39457 * 119.73691 * 0.26415 * 22 21 20 24 24 C 1.38312 * 119.06723 * 179.97438 * 23 22 21 25 25 C 1.38861 * 118.52548 * 0.02562 * 24 23 22 26 26 C 1.38193 * 119.38764 * 359.97438 * 25 24 23 27 27 N 1.31810 * 120.90027 * 359.74318 * 26 25 24 28 28 C 1.34690 * 115.34167 * 0.51656 * 21 20 19 29 29 S 1.76105 * 125.29452 * 0.02562 * 19 18 16 30 30 H 1.08998 * 109.47690 * 58.00812 * 1 2 3 31 31 H 1.09005 * 109.46792 * 178.00361 * 1 2 3 32 32 H 1.08997 * 109.47332 * 298.00606 * 1 2 3 33 33 H 0.97007 * 119.99398 * 180.27613 * 7 6 4 34 34 H 1.09004 * 109.47340 * 95.29408 * 13 12 2 35 35 H 1.08996 * 109.47305 * 215.29698 * 13 12 2 36 36 H 1.09010 * 109.47226 * 335.29560 * 13 12 2 37 37 H 0.96996 * 119.99805 * 359.97438 * 18 16 14 38 38 H 1.08008 * 120.46797 * 359.97438 * 23 22 21 39 39 H 1.08001 * 120.74347 * 180.02562 * 24 23 22 40 40 H 1.07992 * 120.30598 * 180.02562 * 25 24 23 41 41 H 1.07993 * 119.54734 * 180.02562 * 26 25 24 42 42 H 1.08004 * 125.90096 * 179.69085 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.5921 -1.6290 1.1329 6 6 1.7775 -0.1880 2.4806 7 7 1.1311 0.9514 2.5977 8 14 2.3569 -1.0944 4.0076 9 1 1.2531 -1.9387 4.5309 10 1 3.5170 -1.9547 3.6623 11 1 2.7614 -0.1105 5.0437 12 7 2.0184 -0.6905 -1.1963 13 6 1.6645 -2.0930 -1.4283 14 6 2.7931 -0.0354 -2.0834 15 8 3.1707 1.0926 -1.8426 16 6 3.1870 -0.6974 -3.3624 17 8 2.7282 -1.7838 -3.6499 18 7 4.0520 -0.0886 -4.1978 19 6 4.4174 -0.7033 -5.3862 20 7 5.2340 -0.2103 -6.2644 21 6 5.4716 -0.9423 -7.3435 22 6 6.3889 -0.4955 -8.4179 23 6 7.0391 0.7332 -8.3059 24 6 7.8927 1.1363 -9.3167 25 6 8.0695 0.2977 -10.4093 26 6 7.3936 -0.9068 -10.4560 27 7 6.5897 -1.2703 -9.4768 28 6 4.8173 -2.1183 -7.3980 29 16 3.8385 -2.2713 -5.9406 30 1 -0.3634 0.5444 -0.8715 31 1 -0.3633 -1.0271 -0.0358 32 1 -0.3634 0.4825 0.9073 33 1 0.9553 1.3210 3.4772 34 1 0.7909 -2.1446 -2.0781 35 1 2.5013 -2.6051 -1.9030 36 1 1.4378 -2.5729 -0.4761 37 1 4.4183 0.7797 -3.9682 38 1 6.8782 1.3611 -7.4420 39 1 8.4104 2.0823 -9.2576 40 1 8.7296 0.5838 -11.2147 41 1 7.5294 -1.5611 -11.3043 42 1 4.8808 -2.8420 -8.1972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408518818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:16 Heat of formation + Delta-G solvation = 36.794994 kcal Electronic energy + Delta-G solvation = -28164.128121 eV Core-core repulsion = 24044.311523 eV Total energy + Delta-G solvation = -4119.816599 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.104 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.02750 -40.59046 -39.27151 -38.33136 -36.12180 -34.95102 -32.93315 -32.84235 -31.89370 -29.76369 -29.39999 -26.62798 -25.97238 -25.34309 -24.82253 -23.61750 -22.77788 -21.52390 -20.62188 -19.21377 -18.44082 -17.43132 -17.14992 -16.85774 -16.56359 -16.35265 -16.08342 -15.77024 -15.65818 -15.33156 -14.98640 -14.54000 -14.27741 -14.16986 -13.57124 -13.54542 -13.33592 -13.25156 -12.64425 -12.55531 -12.37060 -12.10354 -11.77993 -11.55374 -11.32318 -11.14181 -10.98311 -10.88153 -10.85161 -10.42796 -10.27778 -10.22230 -10.05445 -9.76351 -9.70791 -9.34650 -9.28963 -9.14850 -8.55421 -8.21144 -7.90970 -6.19750 -4.27602 0.23318 0.76306 0.87973 0.97367 1.59766 1.62592 2.10711 2.63579 3.21304 3.29050 3.31365 3.41700 3.49838 3.68873 3.85977 4.30519 4.45614 4.51160 4.54359 4.68247 4.77074 4.95113 5.13670 5.20290 5.31219 5.45526 5.54102 5.73223 5.81511 5.88162 5.97916 6.08343 6.35101 6.41777 6.45084 6.57423 6.63324 6.83550 7.03852 7.23513 7.44284 7.46033 7.54749 7.66008 7.78531 7.95714 8.18668 8.39449 8.76458 9.38663 10.87067 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.023537 B = 0.001919 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.338881 B =14585.387836 C =15029.686520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.254 3.746 3 H 0.072 0.928 4 C -0.531 4.531 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.284 1.284 12 N -0.547 5.547 13 C 0.078 3.922 14 C 0.501 3.499 15 O -0.525 6.525 16 C 0.508 3.492 17 O -0.482 6.482 18 N -0.600 5.600 19 C 0.282 3.718 20 N -0.497 5.497 21 C 0.116 3.884 22 C 0.198 3.802 23 C -0.138 4.138 24 C -0.077 4.077 25 C -0.174 4.174 26 C 0.101 3.899 27 N -0.477 5.477 28 C -0.254 4.254 29 S 0.212 5.788 30 H 0.016 0.984 31 H 0.035 0.965 32 H 0.089 0.911 33 H 0.265 0.735 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.437 0.563 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.159 0.841 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.107 -3.935 -22.980 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.155 3.845 3 H 0.089 0.911 4 C -0.569 4.569 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.210 1.210 12 N -0.277 5.277 13 C -0.065 4.065 14 C 0.281 3.719 15 O -0.403 6.403 16 C 0.291 3.709 17 O -0.354 6.354 18 N -0.252 5.252 19 C -0.088 4.088 20 N -0.220 5.220 21 C -0.015 4.015 22 C 0.059 3.941 23 C -0.158 4.158 24 C -0.103 4.103 25 C -0.195 4.195 26 C -0.057 4.057 27 N -0.186 5.186 28 C -0.396 4.396 29 S 0.463 5.537 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.278 0.722 38 H 0.163 0.837 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.176 0.824 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 7.906 -5.033 -22.279 24.170 hybrid contribution 1.535 1.091 0.257 1.900 sum 9.441 -3.943 -22.022 24.283 Atomic orbital electron populations 1.22060 0.97522 0.99593 1.01045 1.19247 0.91162 0.94891 0.79179 0.91052 1.21241 1.36022 1.09691 0.89983 0.91865 1.24899 0.94842 0.94845 0.99059 1.69916 1.40143 1.17937 1.24219 0.86429 0.79005 0.79428 0.82263 1.20536 1.19802 1.21023 1.48302 1.45182 1.12506 1.21721 1.22007 1.00909 0.81469 1.02161 1.19148 0.82383 0.86709 0.83690 1.90775 1.54462 1.18447 1.76590 1.21382 0.78100 0.85407 0.86044 1.90667 1.51494 1.19620 1.73602 1.42547 1.43614 1.23728 1.15295 1.23892 0.97648 0.95760 0.91455 1.66016 1.18568 1.34529 1.02863 1.17597 1.00017 0.91568 0.92355 1.18798 0.93747 0.90740 0.90766 1.22192 0.96501 0.96916 1.00237 1.21609 0.96193 0.99586 0.92929 1.22213 1.01610 0.96077 0.99564 1.22661 0.92084 0.94781 0.96138 1.67489 1.16467 1.33724 1.00941 1.27508 1.04318 1.02664 1.05158 1.85998 1.42002 1.15249 1.10474 0.96506 0.94591 0.89260 0.92484 0.92815 0.90747 0.89989 0.72189 0.83662 0.84508 0.84672 0.82400 0.79718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.07 37.16 0.34 -2.87 16 2 C 0.25 6.11 2.53 -69.08 -0.17 5.93 16 3 H 0.07 1.96 6.91 -51.93 -0.36 1.60 16 4 C -0.53 -13.63 7.98 -34.44 -0.27 -13.91 16 5 H 0.06 1.60 7.26 -52.49 -0.38 1.22 16 6 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 7 N -0.88 -24.05 11.74 55.43 0.65 -23.40 16 8 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 N -0.55 -11.17 2.75 -175.83 -0.48 -11.65 16 13 C 0.08 1.33 8.12 59.84 0.49 1.81 16 14 C 0.50 9.71 7.72 -11.65 -0.09 9.62 16 15 O -0.52 -11.40 15.83 5.48 0.09 -11.32 16 16 C 0.51 8.09 7.66 -11.65 -0.09 8.00 16 17 O -0.48 -7.58 10.88 5.47 0.06 -7.52 16 18 N -0.60 -8.43 5.38 -12.32 -0.07 -8.50 16 19 C 0.28 3.88 8.37 -87.62 -0.73 3.15 16 20 N -0.50 -6.80 9.88 -10.48 -0.10 -6.90 16 21 C 0.12 1.50 6.61 -84.74 -0.56 0.94 16 22 C 0.20 2.36 6.74 -82.95 -0.56 1.80 16 23 C -0.14 -1.41 9.66 -39.10 -0.38 -1.79 16 24 C -0.08 -0.59 10.16 -39.32 -0.40 -0.99 16 25 C -0.17 -1.18 10.11 -39.37 -0.40 -1.58 16 26 C 0.10 0.82 11.17 -17.58 -0.20 0.62 16 27 N -0.48 -5.26 9.78 -9.79 -0.10 -5.35 16 28 C -0.25 -2.97 10.80 29.48 0.32 -2.65 16 29 S 0.21 2.62 20.53 -107.50 -2.21 0.41 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.03 0.74 7.61 -51.93 -0.39 0.34 16 32 H 0.09 2.19 6.47 -51.93 -0.34 1.85 16 33 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.07 1.19 5.96 -51.93 -0.31 0.88 16 36 H 0.08 1.44 7.03 -51.92 -0.36 1.07 16 37 H 0.44 5.71 8.30 -40.82 -0.34 5.37 16 38 H 0.15 1.47 7.66 -52.48 -0.40 1.06 16 39 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 41 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.19 1.85 7.94 -52.48 -0.42 1.43 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -29.80 373.49 -8.91 -38.71 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -4.55 Total: 4.85 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -2.81 Total: 9.73 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.10 Total: -55.80 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.15 Total: -18.84 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -2.21 Total: 0.41 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.80 -8.91 -38.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408518818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.508 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds