Wall clock time and date at job start Tue Mar 31 2020 06:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47166 * 2 1 4 4 C 1.50699 * 109.47017 * 239.99870 * 2 1 3 5 5 H 1.08001 * 120.00335 * 240.00022 * 4 2 1 6 6 C 1.37880 * 119.99961 * 59.99993 * 4 2 1 7 7 N 1.31513 * 120.00075 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00052 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47170 * 269.99883 * 8 6 4 10 10 H 1.48497 * 109.47172 * 29.99851 * 8 6 4 11 11 H 1.48499 * 109.46903 * 150.00225 * 8 6 4 12 12 N 1.46504 * 109.47462 * 120.00167 * 2 1 3 13 13 C 1.46505 * 119.99888 * 59.99757 * 12 2 1 14 14 C 1.34775 * 119.99977 * 239.99958 * 12 2 1 15 15 O 1.21365 * 120.00080 * 356.42495 * 14 12 2 16 16 C 1.49314 * 119.99738 * 176.41816 * 14 12 2 17 17 O 1.21375 * 120.00178 * 5.92894 * 16 14 12 18 18 N 1.34768 * 119.99664 * 185.91797 * 16 14 12 19 19 C 1.38701 * 120.00197 * 180.02562 * 18 16 14 20 20 N 1.29662 * 125.29665 * 180.02562 * 19 18 16 21 21 C 1.32543 * 117.02177 * 179.97438 * 20 19 18 22 22 C 1.48171 * 122.33030 * 179.97438 * 21 20 19 23 23 C 1.39455 * 119.73413 * 0.02562 * 22 21 20 24 24 C 1.38322 * 119.05783 * 179.97438 * 23 22 21 25 25 C 1.38850 * 118.52652 * 0.02562 * 24 23 22 26 26 C 1.38183 * 119.39511 * 359.97438 * 25 24 23 27 27 N 1.31810 * 120.89647 * 359.74406 * 26 25 24 28 28 C 1.34692 * 115.34041 * 359.97438 * 21 20 19 29 29 S 1.76103 * 125.28781 * 359.69693 * 19 18 16 30 30 H 1.09000 * 109.47119 * 299.99872 * 1 2 3 31 31 H 1.08998 * 109.46957 * 60.00064 * 1 2 3 32 32 H 1.08996 * 109.47166 * 179.97438 * 1 2 3 33 33 H 0.96998 * 120.00661 * 179.97438 * 7 6 4 34 34 H 1.08991 * 109.47070 * 95.98989 * 13 12 2 35 35 H 1.09002 * 109.46721 * 215.99109 * 13 12 2 36 36 H 1.09005 * 109.47045 * 335.98708 * 13 12 2 37 37 H 0.97003 * 120.00777 * 0.02562 * 18 16 14 38 38 H 1.07998 * 120.47570 * 359.97438 * 23 22 21 39 39 H 1.08006 * 120.73357 * 180.02562 * 24 23 22 40 40 H 1.08007 * 120.30205 * 180.02562 * 25 24 23 41 41 H 1.08000 * 119.55191 * 179.97438 * 26 25 24 42 42 H 1.08001 * 125.89971 * 180.02562 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 3.6303 -0.5440 -4.4119 10 1 2.4880 -2.5653 -3.7122 11 1 1.3443 -0.9490 -5.1122 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0933 1.4280 14 6 2.7933 -0.0357 2.0833 15 8 3.1401 1.1057 1.8596 16 6 3.2250 -0.7142 3.3413 17 8 2.9697 -1.8878 3.5162 18 7 3.8982 -0.0235 4.2825 19 6 4.2997 -0.6538 5.4510 20 7 4.9498 -0.0902 6.4210 21 6 5.2510 -0.8491 7.4651 22 6 5.9911 -0.3264 8.6375 23 6 6.3933 1.0086 8.6625 24 6 7.0829 1.4820 9.7642 25 6 7.3494 0.6046 10.8069 26 6 6.9215 -0.7062 10.7165 27 7 6.2611 -1.1311 9.6579 28 6 4.8374 -2.1285 7.3862 29 16 3.9987 -2.3421 5.8513 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 0.7094 1.1618 -3.4844 34 1 2.4673 -2.7352 1.0657 35 1 1.5197 -2.2598 2.4954 36 1 0.7429 -2.3283 0.8953 37 1 4.1021 0.9145 4.1429 38 1 6.1695 1.6637 7.8336 39 1 7.4068 2.5112 9.8123 40 1 7.8855 0.9439 11.6810 41 1 7.1278 -1.3909 11.5259 42 1 4.9898 -2.8907 8.1361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408518819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:21 Heat of formation + Delta-G solvation = 41.509683 kcal Electronic energy + Delta-G solvation = -28164.102313 eV Core-core repulsion = 24044.490158 eV Total energy + Delta-G solvation = -4119.612155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.104 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.04635 -40.59902 -39.27765 -38.33660 -36.14301 -34.96123 -32.94287 -32.85362 -31.89845 -29.71351 -29.39555 -26.63533 -25.98273 -25.35025 -24.81773 -23.62087 -22.77573 -21.53694 -20.61484 -19.21892 -18.46445 -17.41536 -17.16868 -16.86160 -16.56538 -16.26807 -16.11739 -15.80357 -15.66599 -15.34970 -15.00434 -14.56740 -14.28815 -14.16841 -13.55791 -13.55110 -13.37044 -13.25832 -12.72955 -12.59558 -12.39054 -12.13610 -11.68753 -11.53236 -11.32841 -11.15808 -10.92571 -10.88394 -10.78874 -10.32755 -10.27131 -10.22558 -10.05934 -9.76702 -9.71184 -9.34513 -9.30532 -9.10552 -8.54401 -8.21775 -7.89262 -6.18489 -4.27165 0.22918 0.75763 0.87520 0.97000 1.59073 1.62143 2.09896 2.63168 3.22542 3.29307 3.31115 3.41271 3.49627 3.68519 3.86095 4.30724 4.45282 4.50872 4.53995 4.67620 4.76739 4.94579 5.13642 5.19783 5.30805 5.44598 5.53024 5.71370 5.80830 5.89199 5.96747 6.14588 6.34773 6.42027 6.46014 6.61492 6.64617 6.86006 7.06403 7.22091 7.45083 7.46227 7.57432 7.65673 7.83960 7.97679 8.20056 8.39093 8.76728 9.39416 10.86970 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.025216 B = 0.001902 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.119158 B =14717.662298 C =15140.836715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.254 3.746 3 H 0.068 0.932 4 C -0.529 4.529 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.545 5.545 13 C 0.069 3.931 14 C 0.501 3.499 15 O -0.527 6.527 16 C 0.509 3.491 17 O -0.481 6.481 18 N -0.600 5.600 19 C 0.281 3.719 20 N -0.497 5.497 21 C 0.116 3.884 22 C 0.198 3.802 23 C -0.138 4.138 24 C -0.077 4.077 25 C -0.174 4.174 26 C 0.101 3.899 27 N -0.477 5.477 28 C -0.254 4.254 29 S 0.213 5.787 30 H 0.014 0.986 31 H 0.098 0.902 32 H 0.035 0.965 33 H 0.265 0.735 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.437 0.563 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.159 0.841 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.159 -3.192 23.778 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.155 3.845 3 H 0.086 0.914 4 C -0.567 4.567 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.210 1.210 12 N -0.275 5.275 13 C -0.074 4.074 14 C 0.280 3.720 15 O -0.405 6.405 16 C 0.292 3.708 17 O -0.354 6.354 18 N -0.252 5.252 19 C -0.088 4.088 20 N -0.220 5.220 21 C -0.016 4.016 22 C 0.059 3.941 23 C -0.158 4.158 24 C -0.103 4.103 25 C -0.195 4.195 26 C -0.057 4.057 27 N -0.186 5.186 28 C -0.396 4.396 29 S 0.463 5.537 30 H 0.033 0.967 31 H 0.117 0.883 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.278 0.722 38 H 0.163 0.837 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.176 0.824 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 7.315 -4.470 22.864 24.418 hybrid contribution 1.257 1.233 -0.112 1.764 sum 8.572 -3.237 22.752 24.528 Atomic orbital electron populations 1.22126 0.97354 0.99944 1.01265 1.19253 0.91401 0.94624 0.79187 0.91382 1.21247 1.32356 1.13279 0.89866 0.91944 1.24886 0.94774 0.94961 0.99043 1.69860 1.36024 1.22462 1.24061 0.86427 0.78664 0.79909 0.82029 1.20521 1.19801 1.21034 1.48323 1.44916 1.12667 1.21624 1.22196 1.01477 0.81109 1.02611 1.19122 0.82452 0.86745 0.83671 1.90771 1.55742 1.17392 1.76594 1.21412 0.77503 0.86819 0.85081 1.90617 1.51530 1.15604 1.77615 1.42559 1.53019 1.16217 1.13356 1.23894 0.99213 0.94771 0.90931 1.66016 1.18031 1.36820 1.01088 1.17599 1.02117 0.89444 0.92395 1.18797 0.94693 0.89926 0.90636 1.22192 0.97978 0.96169 0.99508 1.21609 0.95606 1.00322 0.92781 1.22210 1.01975 0.95175 1.00104 1.22660 0.93589 0.94309 0.95098 1.67489 1.12711 1.37848 1.00573 1.27512 1.06916 1.01063 1.04142 1.86001 1.51810 1.06572 1.09280 0.96671 0.88310 0.94614 0.92480 0.92563 0.89507 0.90697 0.72202 0.83666 0.84508 0.84670 0.82396 0.79713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 8.96 37.16 0.33 -3.01 16 2 C 0.25 6.14 2.62 -69.08 -0.18 5.95 16 3 H 0.07 1.87 6.90 -51.93 -0.36 1.51 16 4 C -0.53 -13.71 8.37 -34.44 -0.29 -14.00 16 5 H 0.06 1.61 7.65 -52.49 -0.40 1.21 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.01 11.32 55.43 0.63 -23.38 16 8 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.54 -11.17 2.75 -175.82 -0.48 -11.65 16 13 C 0.07 1.19 8.75 59.85 0.52 1.71 16 14 C 0.50 9.67 7.73 -11.65 -0.09 9.58 16 15 O -0.53 -11.40 15.82 5.48 0.09 -11.31 16 16 C 0.51 8.07 7.73 -11.65 -0.09 7.98 16 17 O -0.48 -7.55 10.64 5.48 0.06 -7.49 16 18 N -0.60 -8.36 5.38 -12.32 -0.07 -8.43 16 19 C 0.28 3.85 8.37 -87.61 -0.73 3.11 16 20 N -0.50 -6.75 9.88 -10.48 -0.10 -6.85 16 21 C 0.12 1.49 6.61 -84.74 -0.56 0.93 16 22 C 0.20 2.35 6.74 -82.95 -0.56 1.79 16 23 C -0.14 -1.40 9.66 -39.10 -0.38 -1.78 16 24 C -0.08 -0.59 10.16 -39.32 -0.40 -0.99 16 25 C -0.17 -1.17 10.11 -39.38 -0.40 -1.57 16 26 C 0.10 0.81 11.17 -17.58 -0.20 0.61 16 27 N -0.48 -5.24 9.78 -9.79 -0.10 -5.33 16 28 C -0.25 -2.96 10.80 29.48 0.32 -2.64 16 29 S 0.21 2.61 20.53 -107.50 -2.21 0.40 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.10 2.45 6.07 -51.93 -0.32 2.13 16 32 H 0.03 0.74 6.67 -51.93 -0.35 0.40 16 33 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.09 1.36 5.36 -51.93 -0.28 1.08 16 36 H 0.07 1.28 6.44 -51.93 -0.33 0.94 16 37 H 0.44 5.64 8.30 -40.82 -0.34 5.30 16 38 H 0.15 1.45 7.66 -52.49 -0.40 1.05 16 39 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 40 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 41 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.19 1.84 7.94 -52.49 -0.42 1.42 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -29.81 371.81 -8.84 -38.64 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -4.44 Total: 5.01 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: -2.79 Total: 9.34 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.12 Total: -55.64 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.15 Total: -18.80 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.21 Total: 0.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.81 -8.84 -38.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408518819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.153 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds