Wall clock time and date at job start Tue Mar 31 2020 06:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35903 * 116.99826 * 2 1 4 4 C 1.38825 * 120.01376 * 359.72971 * 3 2 1 5 5 C 1.38197 * 120.10098 * 179.74483 * 4 3 2 6 6 C 1.38129 * 120.13182 * 0.54955 * 5 4 3 7 7 C 1.38999 * 120.03402 * 359.69937 * 6 5 4 8 8 S 1.76197 * 120.05152 * 179.97438 * 7 6 5 9 9 C 1.81392 * 103.00324 * 0.02674 * 8 7 6 10 10 C 1.53000 * 109.47234 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.47243 * 305.00343 * 10 9 8 12 12 O 1.42908 * 109.46982 * 65.00132 * 10 9 8 13 13 C 1.52996 * 109.47191 * 184.99923 * 10 9 8 14 14 O 1.42899 * 109.47113 * 175.00200 * 13 10 9 15 15 C 1.35681 * 117.00017 * 179.97438 * 14 13 10 16 16 C 1.39315 * 119.81853 * 359.72549 * 15 14 13 17 17 C 1.36434 * 120.18419 * 179.76277 * 16 15 14 18 18 C 1.40833 * 119.81380 * 0.50832 * 17 16 15 19 19 C 1.41208 * 120.18156 * 179.72267 * 18 17 16 20 20 H 1.08005 * 119.99914 * 24.57295 * 19 18 17 21 21 C 1.39889 * 120.00125 * 204.57245 * 19 18 17 22 22 N 1.30879 * 119.99907 * 17.93491 * 21 19 18 23 23 Si 1.86803 * 120.00206 * 197.93027 * 21 19 18 24 24 H 1.48495 * 109.46905 * 60.00285 * 23 21 19 25 25 H 1.48498 * 109.47257 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47103 * 300.00198 * 23 21 19 27 27 C 1.40837 * 119.64007 * 359.74735 * 18 17 16 28 28 C 1.36441 * 119.81250 * 359.97438 * 27 18 17 29 29 C 1.38554 * 120.00974 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46610 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.46937 * 299.99382 * 1 2 3 32 32 H 1.08999 * 109.47341 * 59.99876 * 1 2 3 33 33 H 1.07999 * 119.95043 * 359.97438 * 4 3 2 34 34 H 1.07994 * 119.93443 * 180.27284 * 5 4 3 35 35 H 1.08007 * 119.98703 * 179.72854 * 6 5 4 36 36 H 1.09003 * 109.47442 * 299.99787 * 9 8 7 37 37 H 1.09003 * 109.47295 * 59.99945 * 9 8 7 38 38 H 0.96696 * 114.00149 * 59.99649 * 12 10 9 39 39 H 1.09003 * 109.47183 * 295.00097 * 13 10 9 40 40 H 1.08995 * 109.47387 * 54.99987 * 13 10 9 41 41 H 1.08002 * 119.90547 * 0.02562 * 16 15 14 42 42 H 1.07999 * 120.09460 * 180.25497 * 17 16 15 43 43 H 0.97008 * 120.00245 * 179.97438 * 22 21 19 44 44 H 1.08002 * 120.09341 * 179.97438 * 27 18 17 45 45 H 1.07997 * 119.90564 * 179.97438 * 28 27 18 46 46 H 1.07992 * 120.07272 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2901 2.3754 -0.0057 5 6 1.9156 3.6077 -0.0004 6 6 3.2947 3.6853 -0.0008 7 6 4.0570 2.5230 -0.0004 8 16 5.8162 2.6215 -0.0017 9 6 6.1249 4.4089 -0.0026 10 6 7.6331 4.6660 -0.0031 11 1 8.0906 4.1464 0.8388 12 8 8.1980 4.1842 -1.2242 13 6 7.8944 6.1683 0.1218 14 8 9.2998 6.3993 0.2384 15 6 9.7043 7.6889 0.3579 16 6 8.7607 8.7138 0.3568 17 6 9.1588 10.0128 0.4814 18 6 10.5287 10.3170 0.6006 19 6 10.9497 11.6592 0.7241 20 1 10.2734 12.4032 1.1183 21 6 12.2429 12.0251 0.3359 22 7 12.9365 11.2416 -0.4502 23 14 12.9797 13.6322 0.9391 24 1 13.0397 13.6230 2.4228 25 1 14.3503 13.7859 0.3888 26 1 12.1345 14.7656 0.4849 27 6 11.4765 9.2753 0.5955 28 6 11.0613 7.9811 0.4758 29 6 3.4296 1.2837 0.0005 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.2117 2.3181 -0.0105 34 1 1.3250 4.5118 -0.0003 35 1 3.7811 4.6497 -0.0011 36 1 5.6798 4.8541 -0.8925 37 1 5.6810 4.8548 0.8875 38 1 7.8368 4.6035 -2.0171 39 1 7.5147 6.6781 -0.7637 40 1 7.3884 6.5528 1.0073 41 1 7.7108 8.4791 0.2612 42 1 8.4257 10.8059 0.4844 43 1 13.8332 11.4955 -0.7197 44 1 12.5289 9.5003 0.6860 45 1 11.7869 7.1811 0.4712 46 1 4.0191 0.3789 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408526003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:18 Heat of formation + Delta-G solvation = -80.652488 kcal Electronic energy + Delta-G solvation = -27244.472116 eV Core-core repulsion = 23190.810204 eV Total energy + Delta-G solvation = -4053.661912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.123 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.43603 -39.11992 -37.76078 -37.57135 -36.08242 -33.35039 -31.92253 -31.55402 -30.58028 -29.78892 -29.06895 -27.76580 -26.88460 -24.68668 -23.39037 -22.60211 -22.16593 -20.75375 -20.65142 -18.97683 -17.47563 -17.35270 -16.77451 -16.68221 -16.45688 -16.39970 -16.17998 -15.88023 -15.27161 -15.08087 -14.55116 -14.31306 -14.17920 -13.97964 -13.86483 -13.44507 -13.40592 -12.93517 -12.77090 -12.56241 -12.37559 -12.20001 -12.01697 -11.84053 -11.69111 -11.55699 -11.41863 -11.19704 -11.11052 -10.92081 -10.65690 -10.40579 -10.19711 -10.05883 -10.01450 -9.86500 -9.36855 -9.04463 -8.73642 -7.70271 -7.67523 -7.06793 -6.74735 -4.28331 0.77809 1.00996 1.06793 2.07134 2.76456 2.86784 2.92077 3.06780 3.08883 3.20228 3.27274 3.72715 3.93386 4.19417 4.34922 4.58409 4.59002 4.60788 4.62583 4.68041 4.70191 4.73173 4.94710 4.95288 5.01700 5.09190 5.11995 5.21611 5.46680 5.50862 5.63799 5.78254 5.83985 5.88319 5.99308 6.01097 6.16800 6.19257 6.69065 6.94099 6.94571 7.07984 7.15496 7.42206 7.51685 7.54128 7.75330 7.97604 8.17564 8.40884 8.61829 8.87213 8.95533 10.19716 Molecular weight = 360.12amu Principal moments of inertia in cm(-1) A = 0.030421 B = 0.001408 C = 0.001357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.208761 B =19881.283772 C =20631.228159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.145 3.855 4 C -0.217 4.217 5 C -0.059 4.059 6 C -0.173 4.173 7 C -0.051 4.051 8 S -0.066 6.066 9 C -0.148 4.148 10 C 0.128 3.872 11 H 0.117 0.883 12 O -0.541 6.541 13 C 0.044 3.956 14 O -0.316 6.316 15 C -0.012 4.012 16 C -0.167 4.167 17 C -0.199 4.199 18 C 0.089 3.911 19 C -0.464 4.464 20 H 0.076 0.924 21 C 0.076 3.924 22 N -0.797 5.797 23 Si 0.908 3.092 24 H -0.264 1.264 25 H -0.278 1.278 26 H -0.266 1.266 27 C -0.133 4.133 28 C -0.117 4.117 29 C -0.136 4.136 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.375 0.625 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.281 0.719 44 H 0.126 0.874 45 H 0.098 0.902 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.682 -16.912 -0.078 27.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.098 3.902 4 C -0.238 4.238 5 C -0.079 4.079 6 C -0.197 4.197 7 C -0.164 4.164 8 S 0.180 5.820 9 C -0.297 4.297 10 C 0.067 3.933 11 H 0.134 0.866 12 O -0.346 6.346 13 C -0.035 4.035 14 O -0.231 6.231 15 C -0.055 4.055 16 C -0.186 4.186 17 C -0.219 4.219 18 C 0.087 3.913 19 C -0.494 4.494 20 H 0.094 0.906 21 C -0.142 4.142 22 N -0.423 5.423 23 Si 0.732 3.268 24 H -0.189 1.189 25 H -0.203 1.203 26 H -0.191 1.191 27 C -0.153 4.153 28 C -0.136 4.136 29 C -0.161 4.161 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.222 0.778 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.092 0.908 44 H 0.144 0.856 45 H 0.116 0.884 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.955 -18.492 0.192 27.206 hybrid contribution -1.613 2.544 -0.193 3.018 sum -21.568 -15.948 -0.001 26.823 Atomic orbital electron populations 1.23084 0.78139 1.04096 1.01469 1.86082 1.21561 1.26756 1.88550 1.18818 0.91780 0.84275 0.95358 1.21242 1.00095 0.92294 1.10211 1.20848 0.94008 0.97189 0.95817 1.21123 0.94442 0.97093 1.07046 1.21688 0.97973 0.95513 1.01256 1.85905 0.97252 1.07554 1.91271 1.24489 1.01751 0.96570 1.06880 1.21564 0.88389 0.93625 0.89700 0.86564 1.86680 1.66751 1.66196 1.14929 1.23042 0.84311 0.94792 1.01310 1.85881 1.21168 1.25596 1.90490 1.18605 0.93502 0.81096 1.12275 1.20377 0.96306 0.93901 1.08023 1.20545 0.96098 0.94207 1.11073 1.17597 0.90579 0.93583 0.89584 1.19435 0.97606 0.94407 1.37954 0.90579 1.25876 0.96864 0.98749 0.92662 1.69824 1.11223 1.37189 1.24105 0.86380 0.78307 0.81828 0.80273 1.18860 1.20348 1.19101 1.20987 1.00342 0.90191 1.03763 1.19844 0.91602 0.96819 1.05320 1.19875 0.91402 0.96960 1.07832 0.88099 0.92515 0.92524 0.85286 0.85353 0.85607 0.88584 0.87927 0.77782 0.92619 0.92159 0.89005 0.88775 0.90803 0.85636 0.88377 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.77 10.49 -19.43 -0.20 -2.97 16 3 C 0.14 1.37 6.68 -39.25 -0.26 1.11 16 4 C -0.22 -1.72 9.04 -39.38 -0.36 -2.07 16 5 C -0.06 -0.46 10.03 -39.64 -0.40 -0.86 16 6 C -0.17 -1.56 9.36 -39.34 -0.37 -1.93 16 7 C -0.05 -0.52 6.11 -39.05 -0.24 -0.76 16 8 S -0.07 -0.69 21.70 -107.50 -2.33 -3.03 16 9 C -0.15 -1.35 4.00 37.16 0.15 -1.20 16 10 C 0.13 1.52 3.24 -26.73 -0.09 1.43 16 11 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 12 O -0.54 -7.03 13.06 -40.08 -0.52 -7.55 16 13 C 0.04 0.63 4.37 37.16 0.16 0.79 16 14 O -0.32 -6.28 10.09 -23.60 -0.24 -6.51 16 15 C -0.01 -0.27 6.71 -38.78 -0.26 -0.53 16 16 C -0.17 -3.68 8.96 -39.83 -0.36 -4.04 16 17 C -0.20 -4.82 9.74 -39.25 -0.38 -5.21 16 18 C 0.09 2.35 5.57 -106.81 -0.60 1.76 16 19 C -0.46 -12.21 9.04 -37.84 -0.34 -12.55 16 20 H 0.08 1.92 7.91 -52.48 -0.41 1.50 16 21 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 22 N -0.80 -20.53 10.96 55.54 0.61 -19.92 16 23 Si 0.91 18.53 29.60 -169.99 -5.03 13.50 16 24 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 25 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 27 C -0.13 -3.46 8.64 -39.25 -0.34 -3.80 16 28 C -0.12 -2.82 9.92 -39.83 -0.40 -3.22 16 29 C -0.14 -1.40 9.73 -39.22 -0.38 -1.78 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.21 7.67 -51.93 -0.40 -0.19 16 32 H 0.06 0.21 7.65 -51.93 -0.40 -0.19 16 33 H 0.13 0.71 6.29 -52.49 -0.33 0.38 16 34 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 35 H 0.13 0.97 5.87 -52.48 -0.31 0.66 16 36 H 0.10 0.74 7.75 -51.92 -0.40 0.34 16 37 H 0.10 0.82 7.75 -51.92 -0.40 0.42 16 38 H 0.37 3.59 9.05 45.56 0.41 4.00 16 39 H 0.06 0.75 7.63 -51.93 -0.40 0.35 16 40 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 41 H 0.09 1.71 6.27 -52.49 -0.33 1.38 16 42 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 43 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 44 H 0.13 3.34 6.16 -52.49 -0.32 3.01 16 45 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 46 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 397.78 15.07 5.99 5.99 Total: -1.00 -30.92 397.78 -10.63 -41.55 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.36 Total: 8.89 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: -3.55 Total: -29.95 kcal Atomic # 7 Polarization: -20.53 SS G_CDS: 0.61 Total: -19.92 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.97 Total: -17.04 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Atomic # 16 Polarization: -0.69 SS G_CDS: -2.33 Total: -3.03 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.92 -10.63 -41.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408526003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.102 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds