Wall clock time and date at job start Tue Mar 31 2020 06:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35903 * 116.99826 * 2 1 4 4 C 1.38825 * 120.01376 * 359.72971 * 3 2 1 5 5 C 1.38197 * 120.10098 * 179.74483 * 4 3 2 6 6 C 1.38129 * 120.13182 * 0.54955 * 5 4 3 7 7 C 1.38999 * 120.03402 * 359.69937 * 6 5 4 8 8 S 1.76197 * 120.05152 * 179.97438 * 7 6 5 9 9 C 1.81392 * 103.00324 * 0.02674 * 8 7 6 10 10 C 1.53000 * 109.47234 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.47243 * 305.00343 * 10 9 8 12 12 O 1.42908 * 109.46982 * 65.00132 * 10 9 8 13 13 C 1.52996 * 109.47191 * 184.99923 * 10 9 8 14 14 O 1.42899 * 109.47113 * 175.00200 * 13 10 9 15 15 C 1.35681 * 117.00017 * 179.97438 * 14 13 10 16 16 C 1.39315 * 119.81853 * 359.72549 * 15 14 13 17 17 C 1.36434 * 120.18419 * 179.76277 * 16 15 14 18 18 C 1.40833 * 119.81380 * 0.50832 * 17 16 15 19 19 C 1.41208 * 120.18156 * 179.72267 * 18 17 16 20 20 H 1.08005 * 119.99914 * 24.57295 * 19 18 17 21 21 C 1.39889 * 120.00125 * 204.57245 * 19 18 17 22 22 N 1.30879 * 119.99907 * 17.93491 * 21 19 18 23 23 Si 1.86803 * 120.00206 * 197.93027 * 21 19 18 24 24 H 1.48495 * 109.46905 * 60.00285 * 23 21 19 25 25 H 1.48498 * 109.47257 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47103 * 300.00198 * 23 21 19 27 27 C 1.40837 * 119.64007 * 359.74735 * 18 17 16 28 28 C 1.36441 * 119.81250 * 359.97438 * 27 18 17 29 29 C 1.38554 * 120.00974 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46610 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.46937 * 299.99382 * 1 2 3 32 32 H 1.08999 * 109.47341 * 59.99876 * 1 2 3 33 33 H 1.07999 * 119.95043 * 359.97438 * 4 3 2 34 34 H 1.07994 * 119.93443 * 180.27284 * 5 4 3 35 35 H 1.08007 * 119.98703 * 179.72854 * 6 5 4 36 36 H 1.09003 * 109.47442 * 299.99787 * 9 8 7 37 37 H 1.09003 * 109.47295 * 59.99945 * 9 8 7 38 38 H 0.96696 * 114.00149 * 59.99649 * 12 10 9 39 39 H 1.09003 * 109.47183 * 295.00097 * 13 10 9 40 40 H 1.08995 * 109.47387 * 54.99987 * 13 10 9 41 41 H 1.08002 * 119.90547 * 0.02562 * 16 15 14 42 42 H 1.07999 * 120.09460 * 180.25497 * 17 16 15 43 43 H 0.97008 * 120.00245 * 179.97438 * 22 21 19 44 44 H 1.08002 * 120.09341 * 179.97438 * 27 18 17 45 45 H 1.07997 * 119.90564 * 179.97438 * 28 27 18 46 46 H 1.07992 * 120.07272 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2901 2.3754 -0.0057 5 6 1.9156 3.6077 -0.0004 6 6 3.2947 3.6853 -0.0008 7 6 4.0570 2.5230 -0.0004 8 16 5.8162 2.6215 -0.0017 9 6 6.1249 4.4089 -0.0026 10 6 7.6331 4.6660 -0.0031 11 1 8.0906 4.1464 0.8388 12 8 8.1980 4.1842 -1.2242 13 6 7.8944 6.1683 0.1218 14 8 9.2998 6.3993 0.2384 15 6 9.7043 7.6889 0.3579 16 6 8.7607 8.7138 0.3568 17 6 9.1588 10.0128 0.4814 18 6 10.5287 10.3170 0.6006 19 6 10.9497 11.6592 0.7241 20 1 10.2734 12.4032 1.1183 21 6 12.2429 12.0251 0.3359 22 7 12.9365 11.2416 -0.4502 23 14 12.9797 13.6322 0.9391 24 1 13.0397 13.6230 2.4228 25 1 14.3503 13.7859 0.3888 26 1 12.1345 14.7656 0.4849 27 6 11.4765 9.2753 0.5955 28 6 11.0613 7.9811 0.4758 29 6 3.4296 1.2837 0.0005 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.2117 2.3181 -0.0105 34 1 1.3250 4.5118 -0.0003 35 1 3.7811 4.6497 -0.0011 36 1 5.6798 4.8541 -0.8925 37 1 5.6810 4.8548 0.8875 38 1 7.8368 4.6035 -2.0171 39 1 7.5147 6.6781 -0.7637 40 1 7.3884 6.5528 1.0073 41 1 7.7108 8.4791 0.2612 42 1 8.4257 10.8059 0.4844 43 1 13.8332 11.4955 -0.7197 44 1 12.5289 9.5003 0.6860 45 1 11.7869 7.1811 0.4712 46 1 4.0191 0.3789 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408526003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:17 Heat of formation + Delta-G solvation = -98.247223 kcal Electronic energy + Delta-G solvation = -27245.235081 eV Core-core repulsion = 23190.810204 eV Total energy + Delta-G solvation = -4054.424876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.123 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.02986 -40.65220 -38.90778 -38.35083 -37.61141 -35.17858 -32.87648 -32.17763 -31.67651 -31.18395 -30.87119 -28.27629 -27.97689 -26.45147 -24.19975 -23.33635 -23.16815 -22.49204 -22.23887 -19.60769 -19.25442 -18.80210 -17.87814 -17.53890 -17.31715 -17.08011 -17.04356 -16.69765 -16.68718 -16.11177 -15.74171 -15.72766 -15.45441 -14.87271 -14.85824 -14.56866 -14.18658 -14.10045 -14.05655 -13.93016 -13.55585 -13.52573 -13.10620 -13.00835 -12.78397 -12.74012 -12.62896 -12.39297 -12.19059 -12.17942 -11.94910 -11.73427 -11.59229 -11.31534 -11.14202 -11.06692 -10.86712 -10.70641 -9.55187 -9.37951 -8.92094 -8.58977 -8.45883 -6.22210 0.12359 0.31101 0.36212 0.96200 1.03813 1.34776 1.40344 1.51051 1.55309 2.23159 2.35876 2.49257 2.62998 2.73670 3.34863 3.70561 3.71269 3.79026 3.80207 3.87783 4.05644 4.10315 4.15171 4.21643 4.29244 4.36158 4.39389 4.43700 4.43955 4.46810 4.50924 4.72121 4.82917 4.83898 4.90630 5.07510 5.13589 5.22575 5.25432 5.28730 5.37807 5.59474 5.59903 5.65032 5.88752 6.06487 6.27135 6.38134 6.56809 6.72610 6.81817 6.95801 7.10668 8.37340 Molecular weight = 360.12amu Principal moments of inertia in cm(-1) A = 0.030421 B = 0.001408 C = 0.001357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.208761 B =19881.283772 C =20631.228159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.134 3.866 4 C -0.215 4.215 5 C -0.059 4.059 6 C -0.181 4.181 7 C -0.059 4.059 8 S -0.102 6.102 9 C -0.132 4.132 10 C 0.137 3.863 11 H 0.104 0.896 12 O -0.561 6.561 13 C 0.035 3.965 14 O -0.331 6.331 15 C 0.000 4.000 16 C -0.163 4.163 17 C -0.208 4.208 18 C 0.054 3.946 19 C -0.500 4.500 20 H 0.077 0.923 21 C 0.034 3.966 22 N -0.831 5.831 23 Si 0.981 3.019 24 H -0.261 1.261 25 H -0.270 1.270 26 H -0.259 1.259 27 C -0.153 4.153 28 C -0.134 4.134 29 C -0.159 4.159 30 H 0.117 0.883 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.140 0.860 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.389 0.611 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.133 0.867 42 H 0.107 0.893 43 H 0.287 0.713 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.435 -16.331 -0.052 29.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.087 3.913 4 C -0.236 4.236 5 C -0.079 4.079 6 C -0.205 4.205 7 C -0.172 4.172 8 S 0.143 5.857 9 C -0.281 4.281 10 C 0.076 3.924 11 H 0.122 0.878 12 O -0.368 6.368 13 C -0.043 4.043 14 O -0.246 6.246 15 C -0.044 4.044 16 C -0.182 4.182 17 C -0.227 4.227 18 C 0.052 3.948 19 C -0.530 4.530 20 H 0.095 0.905 21 C -0.180 4.180 22 N -0.458 5.458 23 Si 0.802 3.198 24 H -0.186 1.186 25 H -0.194 1.194 26 H -0.183 1.183 27 C -0.173 4.173 28 C -0.153 4.153 29 C -0.184 4.184 30 H 0.135 0.865 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.172 0.828 34 H 0.174 0.826 35 H 0.158 0.842 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.238 0.762 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.151 0.849 42 H 0.125 0.875 43 H 0.098 0.902 44 H 0.126 0.874 45 H 0.123 0.877 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -22.746 -17.935 0.207 28.967 hybrid contribution -0.952 2.138 -0.238 2.353 sum -23.698 -15.797 -0.030 28.480 Atomic orbital electron populations 1.23380 0.76078 1.05671 1.02514 1.86057 1.23777 1.26775 1.88502 1.18972 0.91683 0.85175 0.95464 1.21568 1.01382 0.91733 1.08946 1.21224 0.93838 0.98237 0.94610 1.21383 0.95100 0.97146 1.06855 1.21672 0.97286 0.96016 1.02234 1.86029 0.98629 1.09214 1.91783 1.24351 0.99581 0.95471 1.08656 1.21417 0.90113 0.91758 0.89071 0.87845 1.86652 1.67561 1.66725 1.15904 1.23435 0.81365 0.96676 1.02781 1.85869 1.24888 1.23772 1.90116 1.18664 0.93066 0.82590 1.10061 1.20707 0.98301 0.92704 1.06438 1.20809 0.95492 0.95724 1.10689 1.17959 0.91916 0.94024 0.90888 1.19701 0.98979 0.94687 1.39640 0.90493 1.26723 0.96741 1.02344 0.92151 1.69888 1.11753 1.39163 1.25014 0.85273 0.77676 0.77319 0.79567 1.18576 1.19421 1.18314 1.20890 0.99678 0.91145 1.05555 1.20005 0.93118 0.96405 1.05764 1.19974 0.92233 0.96969 1.09195 0.86454 0.91414 0.91403 0.82786 0.82601 0.84180 0.86619 0.86294 0.76166 0.90981 0.90468 0.84932 0.87510 0.90231 0.87394 0.87699 0.85540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.34 -5.65 10.49 -92.46 -0.97 -6.62 16 3 C 0.13 2.42 6.68 22.49 0.15 2.57 16 4 C -0.22 -2.89 9.04 22.40 0.20 -2.69 16 5 C -0.06 -0.76 10.03 22.23 0.22 -0.54 16 6 C -0.18 -2.84 9.36 22.43 0.21 -2.63 16 7 C -0.06 -1.15 6.11 22.61 0.14 -1.01 16 8 S -0.10 -2.08 21.70 -56.49 -1.23 -3.30 16 9 C -0.13 -2.07 4.00 71.98 0.29 -1.79 16 10 C 0.14 2.99 3.24 30.59 0.10 3.09 16 11 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 12 O -0.56 -13.81 13.06 -144.34 -1.88 -15.69 16 13 C 0.03 0.90 4.37 71.98 0.31 1.21 16 14 O -0.33 -12.59 10.09 -85.35 -0.86 -13.45 16 15 C 0.00 0.00 6.71 22.79 0.15 0.16 16 16 C -0.16 -6.84 8.96 22.11 0.20 -6.64 16 17 C -0.21 -9.91 9.74 22.48 0.22 -9.69 16 18 C 0.05 2.93 5.57 -21.28 -0.12 2.81 16 19 C -0.50 -26.91 9.04 23.40 0.21 -26.70 16 20 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 21 C 0.03 1.74 5.13 85.23 0.44 2.18 16 22 N -0.83 -43.97 10.96 21.82 0.24 -43.73 16 23 Si 0.98 38.22 29.60 68.60 2.03 40.25 16 24 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 25 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 26 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 27 C -0.15 -8.22 8.64 22.49 0.19 -8.02 16 28 C -0.13 -6.57 9.92 22.11 0.22 -6.35 16 29 C -0.16 -3.28 9.73 22.50 0.22 -3.06 16 30 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.07 0.34 7.67 -2.39 -0.02 0.32 16 32 H 0.07 0.34 7.65 -2.39 -0.02 0.32 16 33 H 0.15 1.19 6.29 -2.91 -0.02 1.17 16 34 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 35 H 0.14 1.69 5.87 -2.91 -0.02 1.67 16 36 H 0.12 1.38 7.75 -2.39 -0.02 1.37 16 37 H 0.12 1.50 7.75 -2.39 -0.02 1.49 16 38 H 0.39 6.74 9.05 -74.06 -0.67 6.07 16 39 H 0.07 1.66 7.63 -2.39 -0.02 1.64 16 40 H 0.08 1.77 7.66 -2.39 -0.02 1.75 16 41 H 0.13 4.39 6.27 -2.91 -0.02 4.37 16 42 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 43 H 0.29 13.80 8.30 -92.70 -0.77 13.03 16 44 H 0.11 6.05 6.16 -2.91 -0.02 6.03 16 45 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 46 H 0.13 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -68.84 397.78 2.14 -66.70 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.34 Total: 31.70 kcal Atomic # 6 Polarization: -60.33 SS G_CDS: 4.47 Total: -55.86 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.24 Total: -43.73 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -3.72 Total: -35.77 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Atomic # 16 Polarization: -2.08 SS G_CDS: -1.23 Total: -3.30 kcal Total: -68.84 2.14 -66.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408526003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.550 kcal (2) G-P(sol) polarization free energy of solvation -68.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds