Wall clock time and date at job start Tue Mar 31 2020 06:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35889 * 116.99787 * 2 1 4 4 C 1.38834 * 120.02018 * 359.72644 * 3 2 1 5 5 C 1.38191 * 120.10423 * 179.78863 * 4 3 2 6 6 C 1.38127 * 120.13515 * 0.46521 * 5 4 3 7 7 C 1.38999 * 120.03198 * 359.78450 * 6 5 4 8 8 S 1.76199 * 120.05142 * 179.97438 * 7 6 5 9 9 C 1.81393 * 103.00162 * 0.02562 * 8 7 6 10 10 C 1.53004 * 109.47362 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.46982 * 59.99813 * 10 9 8 12 12 O 1.42901 * 109.46930 * 300.00224 * 10 9 8 13 13 C 1.52993 * 109.47239 * 179.97438 * 10 9 8 14 14 O 1.42903 * 109.46933 * 185.00039 * 13 10 9 15 15 C 1.35681 * 117.00211 * 180.02562 * 14 13 10 16 16 C 1.39317 * 119.81060 * 359.72246 * 15 14 13 17 17 C 1.36438 * 120.17724 * 179.76317 * 16 15 14 18 18 C 1.40830 * 119.81342 * 0.51168 * 17 16 15 19 19 C 1.41221 * 120.17787 * 179.71760 * 18 17 16 20 20 H 1.08000 * 119.99728 * 155.16810 * 19 18 17 21 21 C 1.39886 * 120.00120 * 335.17233 * 19 18 17 22 22 N 1.30881 * 120.00144 * 342.15506 * 21 19 18 23 23 Si 1.86796 * 119.99999 * 162.15761 * 21 19 18 24 24 H 1.48498 * 109.47676 * 94.65470 * 23 21 19 25 25 H 1.48506 * 109.47263 * 214.65298 * 23 21 19 26 26 H 1.48505 * 109.47312 * 334.65260 * 23 21 19 27 27 C 1.40832 * 119.64324 * 359.74151 * 18 17 16 28 28 C 1.36439 * 119.80727 * 0.02562 * 27 18 17 29 29 C 1.38557 * 120.01447 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47178 * 60.00456 * 1 2 3 31 31 H 1.09006 * 109.47281 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47724 * 299.99812 * 1 2 3 33 33 H 1.08001 * 119.94135 * 359.97438 * 4 3 2 34 34 H 1.08004 * 119.92706 * 180.22649 * 5 4 3 35 35 H 1.08000 * 119.98419 * 179.76757 * 6 5 4 36 36 H 1.08995 * 109.47422 * 300.00014 * 9 8 7 37 37 H 1.08998 * 109.47225 * 59.99939 * 9 8 7 38 38 H 0.96704 * 113.99977 * 299.99648 * 12 10 9 39 39 H 1.08998 * 109.47841 * 305.00178 * 13 10 9 40 40 H 1.08998 * 109.47239 * 65.00263 * 13 10 9 41 41 H 1.07990 * 119.91171 * 0.02562 * 16 15 14 42 42 H 1.08003 * 120.09190 * 180.25725 * 17 16 15 43 43 H 0.97002 * 119.99825 * 180.02562 * 22 21 19 44 44 H 1.08005 * 120.09373 * 179.97438 * 27 18 17 45 45 H 1.08009 * 119.90251 * 179.97438 * 28 27 18 46 46 H 1.08003 * 120.06477 * 359.96067 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2901 2.3754 -0.0057 5 6 1.9156 3.6076 -0.0013 6 6 3.2947 3.6853 -0.0009 7 6 4.0569 2.5229 -0.0004 8 16 5.8162 2.6214 -0.0005 9 6 6.1249 4.4088 -0.0006 10 6 7.6332 4.6660 -0.0001 11 1 8.0780 4.2204 -0.8899 12 8 8.2155 4.0820 1.1669 13 6 7.8935 6.1736 -0.0008 14 8 9.2972 6.4145 -0.1178 15 6 9.7008 7.7098 -0.1333 16 6 8.7568 8.7304 -0.0431 17 6 9.1547 10.0355 -0.0531 18 6 10.5229 10.3495 -0.1659 19 6 10.9427 11.6977 -0.1830 20 1 11.9440 11.9555 0.1291 21 6 10.0617 12.6994 -0.6042 22 7 8.9986 12.3856 -1.3002 23 14 10.4026 14.4847 -0.1733 24 1 11.1281 15.1347 -1.2942 25 1 9.1176 15.1916 0.0605 26 1 11.2329 14.5474 1.0563 27 6 11.4701 9.3118 -0.2620 28 6 11.0560 8.0118 -0.2457 29 6 3.4296 1.2837 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.2117 2.3181 -0.0106 34 1 1.3249 4.5118 -0.0021 35 1 3.7810 4.6496 -0.0013 36 1 5.6803 4.8543 -0.8905 37 1 5.6804 4.8544 0.8893 38 1 7.8661 4.4320 1.9980 39 1 7.3749 6.6316 -0.8431 40 1 7.5270 6.6061 0.9301 41 1 7.7077 8.4879 0.0393 42 1 8.4220 10.8255 0.0211 43 1 8.3879 13.0803 -1.5925 44 1 12.5212 9.5443 -0.3492 45 1 11.7810 7.2148 -0.3197 46 1 4.0191 0.3788 0.0016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408526004.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:23 Heat of formation + Delta-G solvation = -80.658120 kcal Electronic energy + Delta-G solvation = -27344.467419 eV Core-core repulsion = 23290.805263 eV Total energy + Delta-G solvation = -4053.662156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.123 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.42003 -39.11129 -37.74367 -37.56886 -36.07623 -33.37804 -31.89751 -31.53568 -30.54530 -29.68372 -29.21891 -27.74909 -26.84018 -24.68040 -23.36316 -22.58407 -22.15387 -20.97445 -20.45032 -18.96023 -17.43430 -17.31576 -16.79863 -16.69337 -16.44472 -16.39620 -16.16552 -15.89448 -15.27573 -15.05042 -14.53832 -14.29383 -14.15984 -13.97888 -13.85919 -13.42559 -13.39153 -12.86997 -12.75766 -12.55914 -12.45338 -12.18851 -11.96729 -11.80663 -11.67370 -11.51360 -11.49087 -11.16388 -11.13702 -10.98831 -10.63305 -10.39005 -10.22263 -10.03860 -9.95364 -9.83238 -9.40736 -9.04924 -8.71849 -7.69513 -7.68279 -7.05121 -6.76622 -4.28688 0.79661 1.02917 1.08411 2.09202 2.73263 2.88249 2.92930 3.05801 3.09902 3.18603 3.29166 3.74090 3.92471 4.21587 4.36760 4.58044 4.59512 4.61455 4.64098 4.69323 4.71641 4.75288 4.96531 4.98013 5.03056 5.11425 5.14040 5.23487 5.48545 5.55333 5.63291 5.80188 5.85727 5.90128 6.01510 6.05033 6.18677 6.24701 6.66720 6.85516 6.95706 7.03254 7.24175 7.36339 7.51665 7.53485 7.85932 7.96730 8.11495 8.39825 8.60907 8.86803 8.95272 10.18351 Molecular weight = 360.12amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.001545 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.403866 B =18114.928394 C =19484.441347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.145 3.855 4 C -0.217 4.217 5 C -0.059 4.059 6 C -0.173 4.173 7 C -0.052 4.052 8 S -0.064 6.064 9 C -0.149 4.149 10 C 0.128 3.872 11 H 0.117 0.883 12 O -0.541 6.541 13 C 0.044 3.956 14 O -0.317 6.317 15 C -0.012 4.012 16 C -0.174 4.174 17 C -0.134 4.134 18 C 0.088 3.912 19 C -0.463 4.463 20 H 0.077 0.923 21 C 0.075 3.925 22 N -0.800 5.800 23 Si 0.906 3.094 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.261 1.261 27 C -0.196 4.196 28 C -0.110 4.110 29 C -0.136 4.136 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.375 0.625 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.120 0.880 43 H 0.279 0.721 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.101 -18.003 2.564 25.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.098 3.902 4 C -0.238 4.238 5 C -0.079 4.079 6 C -0.197 4.197 7 C -0.165 4.165 8 S 0.182 5.818 9 C -0.298 4.298 10 C 0.068 3.932 11 H 0.134 0.866 12 O -0.346 6.346 13 C -0.034 4.034 14 O -0.232 6.232 15 C -0.055 4.055 16 C -0.193 4.193 17 C -0.154 4.154 18 C 0.085 3.915 19 C -0.493 4.493 20 H 0.095 0.905 21 C -0.141 4.141 22 N -0.427 5.427 23 Si 0.731 3.269 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.184 1.184 27 C -0.215 4.215 28 C -0.129 4.129 29 C -0.161 4.161 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.222 0.778 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.138 0.862 43 H 0.090 0.910 44 H 0.119 0.881 45 H 0.116 0.884 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.810 -19.425 1.979 25.765 hybrid contribution -1.943 2.641 0.399 3.302 sum -18.753 -16.784 2.378 25.279 Atomic orbital electron populations 1.23085 0.78147 1.04086 1.01473 1.86077 1.21554 1.26767 1.88558 1.18816 0.91781 0.84265 0.95385 1.21244 1.00092 0.92296 1.10216 1.20852 0.94023 0.97196 0.95782 1.21130 0.94451 0.97114 1.06988 1.21700 0.98044 0.95507 1.01267 1.85900 0.97115 1.07468 1.91286 1.24496 1.01753 0.96606 1.06948 1.21565 0.88196 0.92406 0.91081 0.86575 1.86674 1.66626 1.65939 1.15333 1.23042 0.84254 0.94704 1.01432 1.85857 1.21446 1.25122 1.90819 1.18579 0.93464 0.80983 1.12483 1.20579 0.96425 0.94121 1.08173 1.20923 0.96969 0.94017 1.03482 1.17604 0.91344 0.92929 0.89583 1.19476 0.99591 0.91017 1.39178 0.90455 1.25874 0.94202 1.01593 0.92477 1.69840 1.11443 1.35739 1.25638 0.86336 0.78832 0.81721 0.80049 1.19611 1.20137 1.18447 1.20613 0.98439 0.91630 1.10845 1.19619 0.91840 0.96217 1.05211 1.19870 0.91392 0.96948 1.07866 0.92524 0.88104 0.92519 0.85294 0.85342 0.85586 0.87875 0.88617 0.77797 0.92048 0.92600 0.88957 0.86186 0.91014 0.88143 0.88415 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.82 10.49 -19.39 -0.20 -3.02 16 3 C 0.14 1.40 6.68 -39.24 -0.26 1.13 16 4 C -0.22 -1.78 9.04 -39.38 -0.36 -2.13 16 5 C -0.06 -0.48 10.03 -39.64 -0.40 -0.88 16 6 C -0.17 -1.62 9.36 -39.34 -0.37 -1.98 16 7 C -0.05 -0.54 6.11 -39.06 -0.24 -0.78 16 8 S -0.06 -0.68 21.56 -107.50 -2.32 -3.00 16 9 C -0.15 -1.40 4.03 37.16 0.15 -1.25 16 10 C 0.13 1.54 3.30 -26.73 -0.09 1.45 16 11 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 12 O -0.54 -6.96 12.90 -40.06 -0.52 -7.48 16 13 C 0.04 0.65 4.37 37.15 0.16 0.81 16 14 O -0.32 -6.28 10.09 -23.57 -0.24 -6.52 16 15 C -0.01 -0.27 6.71 -38.79 -0.26 -0.53 16 16 C -0.17 -3.98 8.96 -39.83 -0.36 -4.33 16 17 C -0.13 -3.43 8.64 -39.25 -0.34 -3.77 16 18 C 0.09 2.32 5.57 -106.80 -0.60 1.72 16 19 C -0.46 -12.16 9.04 -37.83 -0.34 -12.50 16 20 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 21 C 0.08 1.87 5.13 -17.34 -0.09 1.78 16 22 N -0.80 -20.46 10.97 55.54 0.61 -19.85 16 23 Si 0.91 18.46 29.59 -169.99 -5.03 13.43 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 27 C -0.20 -4.79 9.74 -39.25 -0.38 -5.17 16 28 C -0.11 -2.55 9.92 -39.84 -0.40 -2.95 16 29 C -0.14 -1.42 9.73 -39.22 -0.38 -1.80 16 30 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 31 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.22 7.67 -51.93 -0.40 -0.18 16 33 H 0.13 0.74 6.29 -52.49 -0.33 0.41 16 34 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 35 H 0.13 1.02 5.87 -52.49 -0.31 0.72 16 36 H 0.10 0.87 7.75 -51.93 -0.40 0.47 16 37 H 0.10 0.77 7.75 -51.92 -0.40 0.37 16 38 H 0.37 3.56 9.05 45.56 0.41 3.97 16 39 H 0.06 0.87 7.64 -51.93 -0.40 0.47 16 40 H 0.06 0.77 7.66 -51.93 -0.40 0.37 16 41 H 0.09 1.84 6.27 -52.49 -0.33 1.51 16 42 H 0.12 3.14 6.18 -52.48 -0.32 2.82 16 43 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 44 H 0.10 2.29 8.06 -52.48 -0.42 1.86 16 45 H 0.10 2.06 8.06 -52.48 -0.42 1.64 16 46 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 397.59 15.07 5.99 5.99 Total: -1.00 -30.80 397.59 -10.61 -41.41 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.36 Total: 9.11 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: -3.55 Total: -30.07 kcal Atomic # 7 Polarization: -20.46 SS G_CDS: 0.61 Total: -19.85 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.96 Total: -17.03 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Atomic # 16 Polarization: -0.68 SS G_CDS: -2.32 Total: -3.00 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.80 -10.61 -41.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408526004.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.245 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds