Wall clock time and date at job start Tue Mar 31 2020 05:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37620 * 119.73043 * 2 1 4 4 C 1.39884 * 119.77249 * 179.70545 * 3 2 1 5 5 N 1.35484 * 133.33433 * 180.24841 * 4 3 2 6 6 C 1.31266 * 109.63649 * 180.02562 * 5 4 3 7 7 C 1.47414 * 125.13934 * 179.97438 * 6 5 4 8 8 C 1.43195 * 120.00425 * 172.41826 * 7 6 5 9 9 N 7.81197 * 170.85543 * 15.10891 * 2 1 3 10 10 C 1.36587 * 119.99425 * 352.41880 * 7 6 5 11 11 C 1.46523 * 120.00344 * 350.05062 * 10 7 6 12 12 C 1.40217 * 120.11792 * 316.42112 * 11 10 7 13 13 C 1.36587 * 119.88010 * 179.76480 * 12 11 10 14 14 C 1.39236 * 120.11652 * 0.53837 * 13 12 11 15 15 O 1.35545 * 119.87907 * 179.72204 * 14 13 12 16 16 C 1.34763 * 116.99615 * 174.33235 * 15 14 13 17 17 H 1.08003 * 120.00475 * 5.09185 * 16 15 14 18 18 C 1.38722 * 119.99783 * 185.08967 * 16 15 14 19 19 N 1.31505 * 119.99819 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00058 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47096 * 90.00147 * 20 18 16 22 22 H 1.48493 * 109.47164 * 209.99989 * 20 18 16 23 23 H 1.48497 * 109.47310 * 330.00078 * 20 18 16 24 24 C 1.39233 * 120.24009 * 359.68960 * 14 13 12 25 25 C 1.36587 * 120.11694 * 0.05065 * 24 14 13 26 26 N 1.37036 * 109.72791 * 0.02562 * 6 5 4 27 27 H 0.97001 * 126.40643 * 179.97438 * 26 6 5 28 28 C 1.38216 * 107.18484 * 359.97438 * 26 6 5 29 29 C 1.38714 * 133.85629 * 179.97438 * 28 26 6 30 30 C 1.37937 * 119.86025 * 180.02562 * 29 28 26 31 31 C 1.50702 * 119.76317 * 179.97438 * 30 29 28 32 32 H 1.08989 * 109.47440 * 90.00116 * 1 2 3 33 33 H 1.09002 * 109.47050 * 210.00785 * 1 2 3 34 34 H 1.09002 * 109.46802 * 329.99950 * 1 2 3 35 35 H 1.08001 * 120.11464 * 359.97368 * 3 2 1 36 36 H 1.08006 * 119.99738 * 170.04674 * 10 7 6 37 37 H 1.08002 * 120.06273 * 0.02562 * 12 11 10 38 38 H 1.07996 * 119.94050 * 180.25411 * 13 12 11 39 39 H 0.97000 * 119.99973 * 179.97438 * 19 18 16 40 40 H 1.07995 * 119.94056 * 180.02562 * 24 14 13 41 41 H 1.07995 * 120.05580 * 179.97438 * 25 24 14 42 42 H 1.08001 * 120.06976 * 359.97438 * 29 28 26 43 43 H 1.08997 * 109.46838 * 90.00048 * 31 30 29 44 44 H 1.08998 * 109.47066 * 209.99735 * 31 30 29 45 45 H 1.08996 * 109.46963 * 330.00042 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1895 1.1951 0.0000 4 6 3.5883 1.1961 0.0062 5 7 4.5173 2.1822 0.0121 6 6 5.7197 1.6555 0.0160 7 6 6.9805 2.4193 0.0223 8 6 8.2292 1.7387 0.1897 9 7 9.2197 1.1986 0.3236 10 6 6.9576 3.7763 -0.1316 11 6 5.7148 4.4489 -0.5188 12 6 4.9083 3.9088 -1.5307 13 6 3.7484 4.5372 -1.8845 14 6 3.3720 5.7181 -1.2501 15 8 2.2227 6.3407 -1.6089 16 6 1.8543 7.4125 -0.8798 17 1 2.5061 7.7888 -0.1052 18 6 0.6377 8.0327 -1.1243 19 7 -0.1557 7.5749 -2.0679 20 14 0.1266 9.5179 -0.1133 21 1 0.6088 10.7568 -0.7749 22 1 -1.3540 9.5581 -0.0063 23 1 0.7185 9.4195 1.2450 24 6 4.1715 6.2613 -0.2480 25 6 5.3308 5.6381 0.1172 26 7 5.6259 0.2884 0.0122 27 1 6.3653 -0.3394 0.0135 28 6 4.2806 -0.0286 0.0062 29 6 3.5745 -1.2225 0.0000 30 6 2.1952 -1.2047 -0.0057 31 6 1.4303 -2.5032 -0.0130 32 1 -0.3634 0.0000 -1.0275 33 1 -0.3633 -0.8899 0.5140 34 1 -0.3633 0.8900 0.5139 35 1 1.6470 2.1289 -0.0004 36 1 7.8557 4.3535 0.0323 37 1 5.2016 2.9952 -2.0266 38 1 3.1244 4.1199 -2.6609 39 1 -1.0066 8.0083 -2.2386 40 1 3.8747 7.1773 0.2412 41 1 5.9504 6.0606 0.8943 42 1 4.1035 -2.1641 -0.0012 43 1 1.2417 -2.8195 1.0129 44 1 0.4812 -2.3629 -0.5303 45 1 2.0149 -3.2663 -0.5268 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408541896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:36 Heat of formation + Delta-G solvation = 122.575699 kcal Electronic energy + Delta-G solvation = -30413.657813 eV Core-core repulsion = 26363.375999 eV Total energy + Delta-G solvation = -4050.281814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 359.137 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.98152 -39.17846 -38.28933 -37.13789 -36.57166 -33.91030 -33.17980 -32.39493 -31.53395 -31.13344 -30.30209 -28.67690 -26.89468 -26.10825 -25.45578 -23.56185 -22.25258 -21.88460 -21.57275 -20.72905 -19.96511 -18.55775 -18.06571 -17.18369 -16.70680 -15.93463 -15.39109 -15.33707 -15.11153 -14.66050 -14.55288 -14.07681 -13.91489 -13.87032 -13.71365 -13.59303 -13.58411 -13.47523 -13.03875 -12.84568 -12.78107 -12.66306 -12.44411 -12.25317 -12.12279 -11.80967 -11.58909 -11.47217 -11.22084 -11.12094 -11.03910 -10.94997 -10.67574 -10.58805 -10.47774 -9.69342 -9.60982 -9.33395 -8.88097 -8.16515 -8.00671 -7.76071 -6.90160 -6.59813 -4.12772 0.44268 1.25615 1.56613 2.38249 2.42861 2.48889 2.81644 2.85526 3.07089 3.08420 3.12782 3.51394 3.70758 3.86898 3.96959 4.42753 4.57847 4.63124 4.84137 4.97719 5.00290 5.11066 5.19541 5.21723 5.29165 5.40969 5.48465 5.58330 5.59962 5.64060 5.67812 5.71317 5.73507 5.86968 5.97432 6.00102 6.11708 6.15474 6.20698 6.44820 6.48838 6.64743 6.67063 6.71273 6.92623 6.98023 6.99996 7.25856 7.31599 7.33788 7.38377 7.41119 7.80242 7.87220 8.03073 8.85478 9.55204 10.56845 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.008012 B = 0.003426 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3493.775322 B = 8170.758624 C =11209.648874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.054 4.054 4 C 0.057 3.943 5 N -0.444 5.444 6 C 0.341 3.659 7 C -0.099 4.099 8 C 0.264 3.736 9 N -0.436 5.436 10 C 0.104 3.896 11 C -0.208 4.208 12 C 0.035 3.965 13 C -0.203 4.203 14 C 0.182 3.818 15 O -0.163 6.163 16 C -0.388 4.388 17 H 0.097 0.903 18 C 0.041 3.959 19 N -0.852 5.852 20 Si 0.942 3.058 21 H -0.272 1.272 22 H -0.276 1.276 23 H -0.265 1.265 24 C -0.253 4.253 25 C -0.019 4.019 26 N -0.605 5.605 27 H 0.417 0.583 28 C 0.048 3.952 29 C -0.117 4.117 30 C -0.070 4.070 31 C -0.111 4.111 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.273 0.727 40 H 0.127 0.873 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.514 -13.685 4.086 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.073 4.073 4 C -0.062 4.062 5 N -0.163 5.163 6 C 0.078 3.922 7 C -0.106 4.106 8 C -0.050 4.050 9 N -0.113 5.113 10 C 0.078 3.922 11 C -0.210 4.210 12 C 0.016 3.984 13 C -0.222 4.222 14 C 0.125 3.875 15 O -0.063 6.063 16 C -0.464 4.464 17 H 0.115 0.885 18 C -0.165 4.165 19 N -0.485 5.485 20 Si 0.766 3.234 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.190 1.190 24 C -0.272 4.272 25 C -0.038 4.038 26 N -0.217 5.217 27 H 0.255 0.745 28 C -0.062 4.062 29 C -0.139 4.139 30 C -0.072 4.072 31 C -0.167 4.167 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.120 0.880 38 H 0.132 0.868 39 H 0.083 0.917 40 H 0.145 0.855 41 H 0.127 0.873 42 H 0.135 0.865 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.298 -13.657 4.012 15.566 hybrid contribution 0.074 -0.296 0.547 0.626 sum 6.372 -13.953 4.559 16.002 Atomic orbital electron populations 1.20771 0.90872 1.02738 1.02395 1.19449 0.96030 0.91733 1.02819 1.20272 0.90277 0.98293 0.98458 1.19101 0.94076 0.87979 1.05060 1.71250 0.96015 1.28403 1.20620 1.20922 0.93007 0.78774 0.99484 1.15126 0.82312 0.91772 1.21340 1.25530 0.92873 0.93735 0.92822 1.81264 1.10784 1.07646 1.11565 1.22591 0.97538 0.90761 0.81280 1.18005 0.98022 0.99574 1.05360 1.20171 0.91238 0.94098 0.92915 1.19712 0.99481 0.96847 1.06178 1.19619 0.86440 0.90472 0.90950 1.83886 1.32827 1.39372 1.50239 1.21473 1.03647 1.04768 1.16516 0.88549 1.25368 0.94769 0.99255 0.97094 1.70015 1.10332 1.39334 1.28792 0.85684 0.78349 0.79821 0.79512 1.19721 1.20125 1.18953 1.20713 0.98165 1.04140 1.04168 1.20519 0.95194 0.92035 0.96057 1.43162 1.06491 1.07756 1.64242 0.74532 1.18804 0.83455 0.96998 1.06902 1.19635 0.93019 0.94437 1.06763 1.19401 0.92242 0.94966 1.00586 1.20773 0.99992 0.93801 1.02150 0.91197 0.91604 0.91288 0.84777 0.84729 0.87999 0.86842 0.91698 0.85531 0.87276 0.86498 0.91302 0.91067 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.16 36.01 0.33 -0.82 16 2 C -0.10 -1.25 5.87 -104.66 -0.61 -1.86 16 3 C -0.05 -0.82 9.74 -39.19 -0.38 -1.20 16 4 C 0.06 0.92 7.21 -84.72 -0.61 0.31 16 5 N -0.44 -7.37 6.62 -8.77 -0.06 -7.43 16 6 C 0.34 4.85 6.64 -154.47 -1.03 3.82 16 7 C -0.10 -1.23 5.73 -104.83 -0.60 -1.83 16 8 C 0.26 3.25 15.00 -22.47 -0.34 2.91 16 9 N -0.44 -5.97 18.54 41.84 0.78 -5.20 16 10 C 0.10 1.25 9.47 -36.84 -0.35 0.91 16 11 C -0.21 -3.23 4.68 -105.07 -0.49 -3.72 16 12 C 0.04 0.61 6.36 -39.43 -0.25 0.36 16 13 C -0.20 -4.07 9.93 -39.81 -0.40 -4.46 16 14 C 0.18 4.09 6.66 -38.84 -0.26 3.83 16 15 O -0.16 -4.35 9.74 0.87 0.01 -4.35 16 16 C -0.39 -10.17 9.48 30.91 0.29 -9.88 16 17 H 0.10 2.32 5.18 -52.48 -0.27 2.05 16 18 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 19 N -0.85 -23.64 13.67 55.48 0.76 -22.88 16 20 Si 0.94 19.36 29.55 -169.99 -5.02 14.34 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 23 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 24 C -0.25 -5.03 9.10 -39.81 -0.36 -5.39 16 25 C -0.02 -0.32 9.75 -39.43 -0.38 -0.70 16 26 N -0.60 -7.61 6.13 -8.48 -0.05 -7.66 16 27 H 0.42 4.21 8.72 -40.82 -0.36 3.85 16 28 C 0.05 0.66 7.29 -83.89 -0.61 0.05 16 29 C -0.12 -1.39 9.70 -39.52 -0.38 -1.77 16 30 C -0.07 -0.80 5.88 -104.54 -0.62 -1.42 16 31 C -0.11 -0.90 9.16 36.01 0.33 -0.57 16 32 H 0.07 0.69 8.14 -51.94 -0.42 0.26 16 33 H 0.07 0.55 6.69 -51.93 -0.35 0.21 16 34 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 35 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 36 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 37 H 0.10 1.65 6.93 -52.49 -0.36 1.28 16 38 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16 39 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.13 2.53 5.61 -52.49 -0.29 2.23 16 41 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.53 6.69 -51.93 -0.35 0.18 16 45 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 LS Contribution 388.74 15.07 5.86 5.86 Total: -1.00 -30.24 388.74 -9.46 -39.70 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -4.91 Total: 8.09 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -6.82 Total: -20.47 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 1.42 Total: -43.17 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: 0.01 Total: -4.35 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.24 -9.46 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408541896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.277 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds