Wall clock time and date at job start Tue Mar 31 2020 06:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42896 * 109.47067 * 2 1 4 4 C 1.35904 * 116.99937 * 179.97438 * 3 2 1 5 5 C 1.38166 * 120.00907 * 0.02562 * 4 3 2 6 6 C 1.39861 * 119.84575 * 179.97438 * 5 4 3 7 7 C 1.47094 * 120.06558 * 179.97438 * 6 5 4 8 8 C 1.34814 * 119.99648 * 180.02562 * 7 6 5 9 9 C 1.46505 * 119.99616 * 180.02562 * 8 7 6 10 10 O 1.34697 * 127.08040 * 359.68166 * 9 8 7 11 11 N 1.20857 * 111.43872 * 179.85823 * 10 9 8 12 12 C 1.30322 * 112.30599 * 0.42179 * 11 10 9 13 13 C 1.50696 * 126.64175 * 179.73749 * 12 11 10 14 14 C 1.38442 * 127.07704 * 179.97438 * 9 8 7 15 15 N 1.48037 * 128.15149 * 359.93017 * 14 9 8 16 16 O 1.31701 * 119.99948 * 90.00016 * 15 14 9 17 17 O 1.31702 * 120.00013 * 269.99742 * 15 14 9 18 18 C 1.40018 * 119.86899 * 0.02562 * 6 5 4 19 19 C 1.37656 * 120.01264 * 359.97438 * 18 6 5 20 20 C 1.39085 * 120.15519 * 359.74813 * 19 18 6 21 21 O 1.35586 * 119.93263 * 180.25509 * 20 19 18 22 22 C 1.22306 * 116.99811 * 354.24480 * 21 20 19 23 23 H 1.07996 * 119.99955 * 5.09857 * 22 21 20 24 24 C 1.46512 * 120.00004 * 185.09656 * 22 21 20 25 25 N 1.29438 * 120.00039 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00292 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46968 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47174 * 120.00195 * 26 24 22 29 29 H 1.48499 * 109.47457 * 240.00451 * 26 24 22 30 30 H 1.09002 * 109.46950 * 299.99639 * 1 2 3 31 31 H 1.08998 * 109.46798 * 59.99964 * 1 2 3 32 32 H 1.08997 * 109.47127 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46798 * 120.00036 * 2 1 3 34 34 H 1.08998 * 109.47194 * 239.99906 * 2 1 3 35 35 H 1.07996 * 120.07687 * 359.95253 * 5 4 3 36 36 H 1.07995 * 119.99746 * 0.02562 * 7 6 5 37 37 H 1.07998 * 120.00353 * 359.97438 * 8 7 6 38 38 H 1.09007 * 109.47291 * 270.01050 * 13 12 11 39 39 H 1.09003 * 109.47316 * 30.00441 * 13 12 11 40 40 H 1.08993 * 109.47393 * 150.00547 * 13 12 11 41 41 H 1.07993 * 119.99296 * 179.97438 * 18 6 5 42 42 H 1.07997 * 119.91617 * 180.02562 * 19 18 6 43 43 H 0.97001 * 120.00332 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 0.0005 5 6 4.1955 0.4297 0.0005 6 6 5.5815 0.6169 0.0005 7 6 6.4822 -0.5460 0.0011 8 6 7.8180 -0.3640 0.0016 9 6 8.7151 -1.5222 0.0016 10 8 8.3628 -2.8223 0.0071 11 7 9.3330 -3.5429 0.0026 12 6 10.4490 -2.8699 0.0027 13 6 11.8436 -3.4409 0.0034 14 6 10.0994 -1.5058 0.0016 15 7 11.0000 -0.3309 0.0002 16 8 11.4006 0.1931 1.1402 17 8 11.4007 0.1903 -1.1410 18 6 6.1100 1.9135 0.0011 19 6 5.2661 3.0011 0.0011 20 6 3.8877 2.8158 -0.0047 21 8 3.0607 3.8902 -0.0099 22 6 3.5807 4.9917 0.1001 23 1 4.6569 5.0820 0.1127 24 6 2.7438 6.1888 0.2148 25 7 1.4541 6.0806 0.2001 26 14 3.5380 7.8712 0.3821 27 1 5.0157 7.7243 0.3717 28 1 3.1186 8.7317 -0.7532 29 1 3.1112 8.4952 1.6602 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.7842 -0.5689 0.0009 36 1 6.0734 -1.5456 0.0011 37 1 8.2268 0.6357 0.0012 38 1 12.1795 -3.5783 1.0313 39 1 11.8428 -4.4025 -0.5100 40 1 12.5173 -2.7553 -0.5104 41 1 7.1799 2.0604 0.0015 42 1 5.6755 4.0004 0.0012 43 1 0.8999 6.8732 0.2757 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408543908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:57 Heat of formation + Delta-G solvation = 93.973516 kcal Electronic energy + Delta-G solvation = -30535.120735 eV Core-core repulsion = 25942.737961 eV Total energy + Delta-G solvation = -4592.382774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.125 amu Computer time = 3.61 seconds Orbital eigenvalues (eV) -45.23988 -40.86787 -38.90386 -38.81213 -36.99516 -35.15592 -34.48781 -34.41435 -33.46198 -31.78687 -31.13108 -29.49068 -29.18262 -28.29673 -27.07423 -25.71371 -23.65175 -23.42428 -22.57904 -21.45374 -21.11473 -19.42369 -18.87347 -18.59255 -18.44017 -18.31024 -17.73440 -16.81907 -16.14675 -16.05637 -15.73154 -15.24440 -15.18531 -14.83511 -14.80044 -14.29838 -14.00530 -13.81193 -13.64038 -13.43541 -13.09749 -12.73154 -12.69820 -12.47361 -12.41102 -12.08117 -11.84559 -11.64677 -11.59619 -11.51742 -11.41859 -11.23378 -11.07106 -10.95168 -10.91990 -10.73535 -10.58727 -10.54454 -10.31479 -9.81289 -9.69914 -8.91808 -7.94818 -7.54244 -7.10167 -4.05568 -0.34734 0.14327 0.89822 1.48643 1.67171 2.26993 2.63163 2.67320 2.76529 2.77240 2.99895 3.34065 3.65003 3.78540 3.93398 4.04458 4.40042 4.48916 4.68078 4.87824 4.90616 5.05732 5.11677 5.16809 5.21995 5.25949 5.45118 5.46116 5.54523 5.64936 5.68308 5.74274 5.78611 5.98545 6.00264 6.08017 6.22507 6.38120 6.40300 6.46859 6.58967 6.60862 6.79408 7.04311 7.15249 7.33440 7.48840 7.79390 7.79850 8.13851 9.17948 9.61750 Molecular weight = 360.12amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.002366 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.572743 B =11830.344764 C =14408.589138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.308 6.308 4 C 0.063 3.937 5 C -0.139 4.139 6 C -0.215 4.215 7 C 0.054 3.946 8 C -0.255 4.255 9 C 0.154 3.846 10 O 0.096 5.904 11 N -0.359 5.359 12 C 0.089 3.911 13 C -0.085 4.085 14 C -0.186 4.186 15 N 0.015 4.985 16 O -0.134 6.134 17 O -0.136 6.136 18 C -0.029 4.029 19 C -0.245 4.245 20 C 0.066 3.934 21 O -0.054 6.054 22 C -0.348 4.348 23 H 0.109 0.891 24 C 0.039 3.961 25 N -0.763 5.763 26 Si 0.956 3.044 27 H -0.251 1.251 28 H -0.264 1.264 29 H -0.264 1.264 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.144 0.856 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.130 0.870 43 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.022 -8.953 0.048 10.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.222 6.222 4 C 0.018 3.982 5 C -0.159 4.159 6 C -0.216 4.216 7 C 0.035 3.965 8 C -0.274 4.274 9 C 0.091 3.909 10 O 0.043 5.957 11 N -0.074 5.074 12 C -0.073 4.073 13 C -0.142 4.142 14 C -0.276 4.276 15 N 0.510 4.490 16 O -0.339 6.339 17 O -0.340 6.340 18 C -0.047 4.047 19 C -0.265 4.265 20 C 0.005 3.995 21 O 0.057 5.943 22 C -0.426 4.426 23 H 0.126 0.874 24 C -0.182 4.182 25 N -0.385 5.385 26 Si 0.777 3.223 27 H -0.174 1.174 28 H -0.189 1.189 29 H -0.188 1.188 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.162 0.838 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.128 0.872 42 H 0.147 0.853 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.429 -10.448 0.035 10.996 hybrid contribution 1.100 1.576 0.034 1.922 sum 4.529 -8.872 0.069 9.962 Atomic orbital electron populations 1.21736 0.93502 1.01946 1.03527 1.22592 0.95343 0.83410 1.00526 1.86142 1.19048 1.27237 1.89812 1.17738 0.82033 0.90965 1.07468 1.20601 0.92718 0.96015 1.06566 1.17705 0.91628 0.91628 1.20682 1.22168 0.92091 0.97796 0.84460 1.20575 0.92159 0.91975 1.22732 1.22766 0.90191 0.86538 0.91396 1.85064 1.28842 1.12471 1.69286 1.73830 0.93341 1.17269 1.22967 1.22845 0.97757 0.86771 0.99926 1.20349 0.87219 1.02248 1.04373 1.20534 0.89467 0.85696 1.31888 1.48960 0.98175 0.99576 1.02253 1.96295 1.59126 1.63112 1.15395 1.96296 1.59189 1.63328 1.15219 1.20789 0.98017 0.91411 0.94533 1.20297 0.91233 0.99188 1.15735 1.18639 0.88841 0.84284 1.07710 1.80267 1.37579 1.13216 1.63236 1.21728 0.95004 0.82590 1.43271 0.87423 1.27405 0.94827 1.00696 0.95320 1.68962 1.05681 1.34232 1.29655 0.85366 0.80532 0.77023 0.79428 1.17379 1.18863 1.18824 0.91666 0.91680 0.91085 0.92836 0.92853 0.86463 0.86514 0.83839 0.89026 0.89042 0.90020 0.87205 0.85261 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.28 37.16 0.38 -1.44 16 2 C 0.06 0.83 5.46 37.16 0.20 1.03 16 3 O -0.31 -6.16 9.92 -34.03 -0.34 -6.49 16 4 C 0.06 1.29 6.70 -39.08 -0.26 1.03 16 5 C -0.14 -2.46 8.77 -39.00 -0.34 -2.80 16 6 C -0.21 -3.74 5.87 -105.03 -0.62 -4.36 16 7 C 0.05 0.81 9.57 -37.21 -0.36 0.46 16 8 C -0.25 -3.88 9.53 -37.47 -0.36 -4.24 16 9 C 0.15 2.33 7.18 -36.18 -0.26 2.07 16 10 O 0.10 1.39 10.94 15.40 0.17 1.56 16 11 N -0.36 -5.13 12.03 33.59 0.40 -4.73 16 12 C 0.09 1.20 7.30 -82.26 -0.60 0.60 16 13 C -0.08 -0.80 10.47 36.00 0.38 -0.43 16 14 C -0.19 -2.87 7.21 -78.88 -0.57 -3.43 16 15 N 0.02 0.25 4.99 34.48 0.17 0.42 16 16 O -0.13 -2.25 19.97 -31.57 -0.63 -2.88 16 17 O -0.14 -2.27 19.97 -31.57 -0.63 -2.90 16 18 C -0.03 -0.52 9.40 -39.13 -0.37 -0.89 16 19 C -0.24 -4.91 9.10 -39.48 -0.36 -5.27 16 20 C 0.07 1.47 6.61 -38.74 -0.26 1.21 16 21 O -0.05 -1.33 9.05 6.82 0.06 -1.27 16 22 C -0.35 -8.00 9.47 34.06 0.32 -7.68 16 23 H 0.11 2.28 5.00 -52.49 -0.26 2.01 16 24 C 0.04 0.84 5.69 -15.23 -0.09 0.75 16 25 N -0.76 -17.53 13.66 55.98 0.76 -16.77 16 26 Si 0.96 15.81 29.64 -169.99 -5.04 10.78 16 27 H -0.25 -4.05 7.11 56.52 0.40 -3.65 16 28 H -0.26 -4.26 7.11 56.52 0.40 -3.86 16 29 H -0.26 -4.26 7.11 56.52 0.40 -3.86 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.71 7.66 -51.93 -0.40 0.31 16 34 H 0.05 0.70 7.66 -51.93 -0.40 0.30 16 35 H 0.12 1.74 6.28 -52.49 -0.33 1.41 16 36 H 0.12 1.49 7.84 -52.49 -0.41 1.08 16 37 H 0.14 2.26 6.06 -52.49 -0.32 1.94 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.11 1.79 6.15 -52.49 -0.32 1.46 16 42 H 0.13 2.47 5.67 -52.49 -0.30 2.17 16 43 H 0.30 5.97 8.27 -40.82 -0.34 5.64 16 LS Contribution 389.51 15.07 5.87 5.87 Total: -1.00 -26.15 389.51 -6.75 -32.90 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -4.41 Total: 6.92 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -3.15 Total: -23.40 kcal Atomic # 7 Polarization: -22.42 SS G_CDS: 1.34 Total: -21.08 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -1.37 Total: -11.99 kcal Atomic # 14 Polarization: 15.81 SS G_CDS: -5.04 Total: 10.78 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -26.15 -6.75 -32.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408543908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.872 kcal (2) G-P(sol) polarization free energy of solvation -26.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.61 seconds