Wall clock time and date at job start Tue Mar 31 2020 06:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42896 * 109.47067 * 2 1 4 4 C 1.35904 * 116.99937 * 179.97438 * 3 2 1 5 5 C 1.38166 * 120.00907 * 0.02562 * 4 3 2 6 6 C 1.39861 * 119.84575 * 179.97438 * 5 4 3 7 7 C 1.47094 * 120.06558 * 179.97438 * 6 5 4 8 8 C 1.34814 * 119.99648 * 180.02562 * 7 6 5 9 9 C 1.46505 * 119.99616 * 180.02562 * 8 7 6 10 10 O 1.34697 * 127.08040 * 359.68166 * 9 8 7 11 11 N 1.20857 * 111.43872 * 179.85823 * 10 9 8 12 12 C 1.30322 * 112.30599 * 0.42179 * 11 10 9 13 13 C 1.50696 * 126.64175 * 179.73749 * 12 11 10 14 14 C 1.38442 * 127.07704 * 179.97438 * 9 8 7 15 15 N 1.48037 * 128.15149 * 359.93017 * 14 9 8 16 16 O 1.31701 * 119.99948 * 90.00016 * 15 14 9 17 17 O 1.31702 * 120.00013 * 269.99742 * 15 14 9 18 18 C 1.40018 * 119.86899 * 0.02562 * 6 5 4 19 19 C 1.37656 * 120.01264 * 359.97438 * 18 6 5 20 20 C 1.39085 * 120.15519 * 359.74813 * 19 18 6 21 21 O 1.35586 * 119.93263 * 180.25509 * 20 19 18 22 22 C 1.22306 * 116.99811 * 354.24480 * 21 20 19 23 23 H 1.07996 * 119.99955 * 5.09857 * 22 21 20 24 24 C 1.46512 * 120.00004 * 185.09656 * 22 21 20 25 25 N 1.29438 * 120.00039 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00292 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46968 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47174 * 120.00195 * 26 24 22 29 29 H 1.48499 * 109.47457 * 240.00451 * 26 24 22 30 30 H 1.09002 * 109.46950 * 299.99639 * 1 2 3 31 31 H 1.08998 * 109.46798 * 59.99964 * 1 2 3 32 32 H 1.08997 * 109.47127 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46798 * 120.00036 * 2 1 3 34 34 H 1.08998 * 109.47194 * 239.99906 * 2 1 3 35 35 H 1.07996 * 120.07687 * 359.95253 * 5 4 3 36 36 H 1.07995 * 119.99746 * 0.02562 * 7 6 5 37 37 H 1.07998 * 120.00353 * 359.97438 * 8 7 6 38 38 H 1.09007 * 109.47291 * 270.01050 * 13 12 11 39 39 H 1.09003 * 109.47316 * 30.00441 * 13 12 11 40 40 H 1.08993 * 109.47393 * 150.00547 * 13 12 11 41 41 H 1.07993 * 119.99296 * 179.97438 * 18 6 5 42 42 H 1.07997 * 119.91617 * 180.02562 * 19 18 6 43 43 H 0.97001 * 120.00332 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 0.0005 5 6 4.1955 0.4297 0.0005 6 6 5.5815 0.6169 0.0005 7 6 6.4822 -0.5460 0.0011 8 6 7.8180 -0.3640 0.0016 9 6 8.7151 -1.5222 0.0016 10 8 8.3628 -2.8223 0.0071 11 7 9.3330 -3.5429 0.0026 12 6 10.4490 -2.8699 0.0027 13 6 11.8436 -3.4409 0.0034 14 6 10.0994 -1.5058 0.0016 15 7 11.0000 -0.3309 0.0002 16 8 11.4006 0.1931 1.1402 17 8 11.4007 0.1903 -1.1410 18 6 6.1100 1.9135 0.0011 19 6 5.2661 3.0011 0.0011 20 6 3.8877 2.8158 -0.0047 21 8 3.0607 3.8902 -0.0099 22 6 3.5807 4.9917 0.1001 23 1 4.6569 5.0820 0.1127 24 6 2.7438 6.1888 0.2148 25 7 1.4541 6.0806 0.2001 26 14 3.5380 7.8712 0.3821 27 1 5.0157 7.7243 0.3717 28 1 3.1186 8.7317 -0.7532 29 1 3.1112 8.4952 1.6602 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.7842 -0.5689 0.0009 36 1 6.0734 -1.5456 0.0011 37 1 8.2268 0.6357 0.0012 38 1 12.1795 -3.5783 1.0313 39 1 11.8428 -4.4025 -0.5100 40 1 12.5173 -2.7553 -0.5104 41 1 7.1799 2.0604 0.0015 42 1 5.6755 4.0004 0.0012 43 1 0.8999 6.8732 0.2757 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408543908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:53 Heat of formation + Delta-G solvation = 82.071631 kcal Electronic energy + Delta-G solvation = -30535.636840 eV Core-core repulsion = 25942.737961 eV Total energy + Delta-G solvation = -4592.898879 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.125 amu Computer time = 3.83 seconds Orbital eigenvalues (eV) -46.50164 -42.25413 -40.25377 -40.20940 -38.47692 -36.31495 -35.89328 -35.75320 -34.78138 -33.06141 -32.39886 -30.97522 -30.17497 -29.68946 -28.41144 -27.14324 -24.96170 -24.73239 -23.83750 -22.78647 -22.47977 -20.71441 -20.32725 -19.89277 -19.75384 -19.72572 -18.99130 -18.14272 -17.52265 -17.37226 -17.05775 -16.68874 -16.50544 -16.18906 -16.15614 -15.71574 -15.20552 -15.03945 -14.60314 -14.49729 -14.22078 -14.03325 -14.00055 -13.71296 -13.53048 -13.26167 -13.18910 -12.89883 -12.88686 -12.84259 -12.75278 -12.57116 -12.42430 -12.25867 -12.14989 -12.08234 -11.86221 -11.70298 -11.53549 -11.26795 -11.08037 -10.32758 -9.41954 -8.86155 -8.63977 -5.72069 -1.72363 -1.11379 -0.43176 0.24601 0.37836 0.65922 1.32716 1.33350 1.45966 1.50806 1.60602 2.06644 2.48241 2.52102 2.61157 2.71974 3.07693 3.14063 3.20277 3.51200 3.81445 3.85007 4.03594 4.11562 4.18042 4.23904 4.25862 4.36178 4.37763 4.40768 4.43924 4.50122 4.57484 4.80543 4.83760 4.90802 4.97053 4.98986 5.03248 5.13387 5.20522 5.23164 5.34426 5.48617 5.70830 5.76258 6.00271 6.47003 6.56222 6.73400 7.87776 8.36942 Molecular weight = 360.12amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.002366 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.572743 B =11830.344764 C =14408.589138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 O -0.341 6.341 4 C 0.035 3.965 5 C -0.121 4.121 6 C -0.187 4.187 7 C 0.062 3.938 8 C -0.216 4.216 9 C 0.148 3.852 10 O 0.111 5.889 11 N -0.358 5.358 12 C 0.093 3.907 13 C -0.089 4.089 14 C -0.179 4.179 15 N 0.013 4.987 16 O -0.137 6.137 17 O -0.140 6.140 18 C -0.044 4.044 19 C -0.251 4.251 20 C 0.066 3.934 21 O -0.121 6.121 22 C -0.425 4.425 23 H 0.103 0.897 24 C -0.007 4.007 25 N -0.848 5.848 26 Si 1.021 2.979 27 H -0.249 1.249 28 H -0.260 1.260 29 H -0.261 1.261 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.144 0.856 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.135 0.865 42 H 0.128 0.872 43 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.804 -15.515 0.043 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.257 6.257 4 C -0.010 4.010 5 C -0.140 4.140 6 C -0.188 4.188 7 C 0.043 3.957 8 C -0.236 4.236 9 C 0.083 3.917 10 O 0.058 5.942 11 N -0.071 5.071 12 C -0.068 4.068 13 C -0.146 4.146 14 C -0.268 4.268 15 N 0.508 4.492 16 O -0.342 6.342 17 O -0.344 6.344 18 C -0.062 4.062 19 C -0.271 4.271 20 C 0.010 3.990 21 O -0.017 6.017 22 C -0.502 4.502 23 H 0.120 0.880 24 C -0.218 4.218 25 N -0.476 5.476 26 Si 0.838 3.162 27 H -0.172 1.172 28 H -0.185 1.185 29 H -0.185 1.185 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.128 0.872 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.176 0.824 36 H 0.174 0.826 37 H 0.162 0.838 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.104 0.896 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.290 -17.075 0.028 18.981 hybrid contribution 0.696 2.104 0.010 2.216 sum 8.986 -14.972 0.038 17.461 Atomic orbital electron populations 1.21789 0.92204 1.04027 1.02447 1.23016 0.96596 0.81305 1.02079 1.86155 1.18809 1.30741 1.89951 1.18116 0.83174 0.91163 1.08512 1.21089 0.92458 0.97045 1.03420 1.18165 0.92170 0.92289 1.16210 1.22369 0.91386 0.98451 0.83517 1.20808 0.92491 0.92305 1.17970 1.22741 0.90079 0.87002 0.91882 1.85104 1.29033 1.11844 1.68219 1.73884 0.93539 1.17041 1.22671 1.23479 0.99192 0.85760 0.98402 1.20606 0.84752 1.03222 1.05993 1.20924 0.89682 0.86316 1.29919 1.49106 0.98249 0.99700 1.02187 1.96315 1.59305 1.63257 1.15324 1.96316 1.59415 1.63501 1.15150 1.21099 0.99071 0.91222 0.94829 1.20570 0.91056 1.00273 1.15153 1.19525 0.90128 0.85792 1.03546 1.80326 1.37484 1.13617 1.70249 1.21599 0.94775 0.83131 1.50733 0.88015 1.28278 0.95159 1.03363 0.95005 1.69044 1.06978 1.34536 1.37022 0.84491 0.79358 0.73053 0.79268 1.17189 1.18496 1.18515 0.92862 0.92806 0.87224 0.91032 0.90991 0.82376 0.82617 0.83832 0.87156 0.86879 0.89578 0.84780 0.85416 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 10.28 71.98 0.74 -2.75 16 2 C 0.04 1.22 5.46 71.98 0.39 1.62 16 3 O -0.34 -14.15 9.92 -78.52 -0.78 -14.92 16 4 C 0.04 1.47 6.70 22.60 0.15 1.62 16 5 C -0.12 -3.86 8.77 22.65 0.20 -3.66 16 6 C -0.19 -5.66 5.87 -20.13 -0.12 -5.78 16 7 C 0.06 1.41 9.57 23.81 0.23 1.64 16 8 C -0.22 -5.14 9.53 23.64 0.23 -4.92 16 9 C 0.15 3.47 7.18 24.47 0.18 3.65 16 10 O 0.11 2.44 10.94 65.31 0.71 3.16 16 11 N -0.36 -7.92 12.03 -48.25 -0.58 -8.50 16 12 C 0.09 1.94 7.30 43.41 0.32 2.26 16 13 C -0.09 -1.16 10.47 71.23 0.75 -0.42 16 14 C -0.18 -4.45 7.21 37.05 0.27 -4.19 16 15 N 0.01 0.36 4.99 -44.83 -0.22 0.14 16 16 O -0.14 -4.00 19.97 3.51 0.07 -3.93 16 17 O -0.14 -4.09 19.97 3.51 0.07 -4.02 16 18 C -0.04 -1.50 9.40 22.56 0.21 -1.29 16 19 C -0.25 -10.48 9.10 22.34 0.20 -10.27 16 20 C 0.07 3.18 6.61 22.82 0.15 3.33 16 21 O -0.12 -6.78 9.05 67.65 0.61 -6.17 16 22 C -0.43 -22.67 9.47 69.98 0.66 -22.01 16 23 H 0.10 5.03 5.00 -2.91 -0.01 5.01 16 24 C -0.01 -0.38 5.69 87.20 0.50 0.12 16 25 N -0.85 -45.66 13.66 23.20 0.32 -45.35 16 26 Si 1.02 37.48 29.64 68.60 2.03 39.52 16 27 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 28 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 29 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 1.67 7.66 -2.39 -0.02 1.66 16 34 H 0.07 1.68 7.66 -2.39 -0.02 1.66 16 35 H 0.16 3.75 6.28 -2.91 -0.02 3.73 16 36 H 0.16 2.58 7.84 -2.91 -0.02 2.56 16 37 H 0.14 3.61 6.06 -2.91 -0.02 3.60 16 38 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.13 3.88 6.15 -2.91 -0.02 3.86 16 42 H 0.13 5.33 5.67 -2.91 -0.02 5.32 16 43 H 0.30 14.12 8.27 -92.71 -0.77 13.35 16 Total: -1.00 -65.82 389.51 8.38 -57.44 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 1.09 Total: 23.68 kcal Atomic # 6 Polarization: -46.09 SS G_CDS: 5.05 Total: -41.05 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.49 Total: -53.71 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: 0.69 Total: -25.88 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.52 kcal Total: -65.82 8.38 -57.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408543908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.516 kcal (2) G-P(sol) polarization free energy of solvation -65.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.83 seconds