Wall clock time and date at job start Tue Mar 31 2020 06:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99573 * 2 1 4 4 H 1.48497 * 109.47536 * 270.00052 * 3 2 1 5 5 H 1.48500 * 109.47328 * 30.00445 * 3 2 1 6 6 H 1.48509 * 109.47092 * 150.00268 * 3 2 1 7 7 C 1.37875 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99955 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99929 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46951 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.78191 * 54.52456 * 10 9 7 12 12 C 1.53236 * 109.62505 * 175.00002 * 10 9 7 13 13 C 1.52957 * 109.40548 * 174.34082 * 12 10 9 14 14 C 1.52962 * 109.81773 * 296.40620 * 13 12 10 15 15 C 1.53230 * 109.40588 * 63.59718 * 14 13 12 16 16 C 1.51266 * 109.62627 * 294.04431 * 10 9 7 17 17 N 1.28014 * 120.85105 * 8.96306 * 16 10 9 18 18 N 1.40100 * 119.99823 * 173.46583 * 17 16 10 19 19 C 1.34775 * 119.99551 * 174.61164 * 18 17 16 20 20 O 1.21298 * 120.00435 * 359.97438 * 19 18 17 21 21 C 1.50699 * 119.99834 * 180.02562 * 19 18 17 22 22 S 1.81403 * 109.47272 * 179.97438 * 21 19 18 23 23 C 1.81398 * 103.00010 * 179.97438 * 22 21 19 24 24 C 1.50698 * 109.47004 * 179.97438 * 23 22 21 25 25 C 1.38231 * 120.00364 * 269.72608 * 24 23 22 26 26 C 1.38234 * 120.00232 * 179.76407 * 25 24 23 27 27 C 1.38238 * 119.99990 * 0.51269 * 26 25 24 28 28 C 1.38238 * 119.99661 * 359.74074 * 27 26 25 29 29 C 1.38230 * 119.99984 * 0.02562 * 28 27 26 30 30 H 0.97001 * 120.00455 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47102 * 60.00296 * 9 7 2 32 32 H 1.09002 * 109.47134 * 300.00192 * 9 7 2 33 33 H 1.08999 * 109.47945 * 54.36384 * 12 10 9 34 34 H 1.09001 * 109.49377 * 294.33110 * 12 10 9 35 35 H 1.09004 * 109.40924 * 56.50788 * 13 12 10 36 36 H 1.08998 * 109.41490 * 176.29704 * 13 12 10 37 37 H 1.09004 * 109.48201 * 183.57664 * 14 13 12 38 38 H 1.09006 * 109.47945 * 303.61459 * 14 13 12 39 39 H 1.08998 * 109.62352 * 185.66038 * 15 14 13 40 40 H 1.08991 * 109.78354 * 65.18105 * 15 14 13 41 41 H 0.97001 * 120.00323 * 354.60624 * 18 17 16 42 42 H 1.09007 * 109.47007 * 299.99413 * 21 19 18 43 43 H 1.09001 * 109.47427 * 59.99424 * 21 19 18 44 44 H 1.08993 * 109.47331 * 299.99949 * 23 22 21 45 45 H 1.09002 * 109.47042 * 59.99905 * 23 22 21 46 46 H 1.08002 * 120.00053 * 0.02562 * 25 24 23 47 47 H 1.08005 * 120.00156 * 180.23061 * 26 25 24 48 48 H 1.07999 * 120.00284 * 179.71935 * 27 26 25 49 49 H 1.08002 * 119.99869 * 179.97438 * 28 27 26 50 50 H 1.07999 * 119.99932 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 1 2.9376 -3.5555 0.8347 12 6 1.4871 -4.9876 0.1253 13 6 2.4701 -6.1508 -0.0168 14 6 3.0890 -6.1390 -1.4156 15 6 3.9076 -4.8568 -1.5993 16 6 3.0169 -3.6708 -1.3017 17 7 2.9189 -2.6994 -2.1296 18 7 3.7420 -2.6588 -3.2625 19 6 3.5657 -1.6964 -4.1894 20 8 2.6941 -0.8656 -4.0430 21 6 4.4507 -1.6531 -5.4084 22 16 3.9672 -0.2543 -6.4574 23 6 5.1265 -0.3672 -7.8480 24 6 4.8488 0.7459 -8.8251 25 6 3.9554 0.5492 -9.8614 26 6 3.6970 1.5719 -10.7548 27 6 4.3400 2.7880 -10.6181 28 6 5.2373 2.9830 -9.5848 29 6 5.4920 1.9619 -8.6886 30 1 -0.4851 0.8400 0.0004 31 1 0.6242 -2.5567 -0.8903 32 1 0.6248 -2.5571 0.8897 33 1 0.7332 -5.0509 -0.6594 34 1 1.0024 -5.0382 1.1002 35 1 3.2588 -6.0518 0.7292 36 1 1.9425 -7.0920 0.1381 37 1 3.7397 -7.0056 -1.5325 38 1 2.2970 -6.1751 -2.1637 39 1 4.2671 -4.7960 -2.6265 40 1 4.7553 -4.8590 -0.9143 41 1 4.4389 -3.3234 -3.3799 42 1 5.4893 -1.5339 -5.0993 43 1 4.3428 -2.5816 -5.9690 44 1 6.1478 -0.2797 -7.4776 45 1 5.0022 -1.3281 -8.3475 46 1 3.4561 -0.4023 -9.9706 47 1 2.9962 1.4193 -11.5623 48 1 4.1415 3.5855 -11.3188 49 1 5.7399 3.9330 -9.4783 50 1 6.1934 2.1142 -7.8816 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408719453.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:41 Heat of formation + Delta-G solvation = 19.275639 kcal Electronic energy + Delta-G solvation = -28755.817519 eV Core-core repulsion = 24874.614662 eV Total energy + Delta-G solvation = -3881.202857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.47311 -39.38033 -38.30973 -35.21656 -33.40344 -33.11171 -31.87452 -31.22983 -31.14264 -29.68673 -27.71357 -27.21298 -25.96479 -23.02701 -22.83271 -21.99667 -21.57017 -20.56873 -20.05373 -18.91203 -17.31344 -16.83645 -16.31948 -16.05138 -15.92629 -15.69167 -15.43307 -15.29287 -14.56084 -14.30690 -14.16748 -13.91695 -13.79047 -13.72423 -13.69121 -13.30007 -13.22442 -12.94093 -12.66992 -12.55229 -12.39515 -11.91138 -11.69779 -11.39268 -11.28227 -11.22353 -11.02883 -10.87242 -10.73467 -10.41980 -10.29468 -10.26459 -10.13534 -9.91148 -9.69227 -9.48707 -9.16297 -8.91292 -8.89764 -8.74651 -8.12141 -8.03567 -7.69654 -5.71065 -3.66733 0.72830 1.16807 1.62537 2.41073 2.42563 2.98810 3.28973 3.53618 3.59468 3.61429 3.65537 4.35101 4.47897 4.63532 4.74272 4.75867 4.85447 4.85779 4.87449 4.89184 4.89833 5.02650 5.07959 5.16626 5.21255 5.26266 5.36988 5.50151 5.59124 5.65149 5.69288 5.71236 5.78818 5.80560 5.92057 6.05204 6.09223 6.19593 6.26360 6.26540 6.30582 6.36437 6.53748 6.69467 6.73038 6.84844 7.02368 7.48158 7.82453 7.99582 8.11638 8.24550 8.66214 8.98495 9.31494 9.93811 11.41608 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.010174 B = 0.002390 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.523507 B =11710.262193 C =13802.421351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.063 3.937 3 Si 0.882 3.118 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.482 4.482 8 H 0.047 0.953 9 C 0.033 3.967 10 C -0.024 4.024 11 H 0.082 0.918 12 C -0.113 4.113 13 C -0.121 4.121 14 C -0.107 4.107 15 C -0.121 4.121 16 C 0.098 3.902 17 N -0.170 5.170 18 N -0.598 5.598 19 C 0.536 3.464 20 O -0.465 6.465 21 C -0.130 4.130 22 S -0.155 6.155 23 C -0.072 4.072 24 C -0.070 4.070 25 C -0.101 4.101 26 C -0.121 4.121 27 C -0.117 4.117 28 C -0.120 4.120 29 C -0.101 4.101 30 H 0.256 0.744 31 H 0.023 0.977 32 H 0.018 0.982 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.370 0.630 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.124 0.876 47 H 0.123 0.877 48 H 0.122 0.878 49 H 0.124 0.876 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.929 -8.392 -17.454 23.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.137 4.137 3 Si 0.711 3.289 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.521 4.521 8 H 0.065 0.935 9 C -0.004 4.004 10 C -0.045 4.045 11 H 0.100 0.900 12 C -0.151 4.151 13 C -0.158 4.158 14 C -0.145 4.145 15 C -0.162 4.162 16 C -0.097 4.097 17 N 0.029 4.971 18 N -0.341 5.341 19 C 0.319 3.681 20 O -0.334 6.334 21 C -0.282 4.282 22 S 0.073 5.927 23 C -0.220 4.220 24 C -0.072 4.072 25 C -0.121 4.121 26 C -0.139 4.139 27 C -0.136 4.136 28 C -0.139 4.139 29 C -0.121 4.121 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.209 0.791 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.142 0.858 47 H 0.141 0.859 48 H 0.140 0.860 49 H 0.142 0.858 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.936 -6.056 -17.479 22.015 hybrid contribution 2.450 -1.040 -0.347 2.684 sum 14.386 -7.096 -17.826 23.981 Atomic orbital electron populations 1.69933 1.05910 1.26027 1.52163 1.24814 0.94612 0.98678 0.95612 0.86750 0.79563 0.84440 0.78161 1.20469 1.21679 1.20490 1.20875 0.92213 0.90491 1.48498 0.93501 1.19081 0.93265 0.90550 0.97527 1.20452 0.97468 0.96654 0.89925 0.90026 1.21689 0.97742 0.93495 1.02206 1.21557 0.99188 0.98724 0.96347 1.21439 0.99058 0.95736 0.98273 1.21289 0.98826 0.95042 1.00996 1.25501 0.96951 0.90299 0.96958 1.75560 1.09171 1.19945 0.92404 1.47238 1.34314 1.30866 1.21658 1.19297 0.84933 0.81585 0.82265 1.90875 1.31441 1.36144 1.74932 1.23520 1.03644 1.02697 0.98371 1.88136 1.46130 1.37996 1.20409 1.22457 1.01998 1.00293 0.97241 1.19163 0.98207 0.94452 0.95336 1.21065 0.97030 0.99597 0.94424 1.21145 0.99865 0.93429 0.99442 1.21205 0.96787 0.97362 0.98249 1.21150 0.98590 0.98945 0.95165 1.21080 0.99646 0.92499 0.98861 0.93458 0.95828 0.96354 0.91973 0.91283 0.91896 0.92246 0.92004 0.91938 0.92280 0.89999 0.79120 0.87286 0.87355 0.89195 0.89219 0.85753 0.85854 0.86021 0.85849 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.96 13.29 55.43 0.74 -28.23 16 2 C 0.06 1.94 5.46 -17.82 -0.10 1.84 16 3 Si 0.88 24.24 29.54 -169.99 -5.02 19.21 16 4 H -0.28 -7.97 7.11 56.52 0.40 -7.57 16 5 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 6 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 7 C -0.48 -14.14 7.55 -34.44 -0.26 -14.40 16 8 H 0.05 1.37 7.53 -52.49 -0.40 0.98 16 9 C 0.03 0.86 4.12 -27.88 -0.11 0.74 16 10 C -0.02 -0.48 2.42 -91.37 -0.22 -0.70 16 11 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 12 C -0.11 -1.76 5.23 -26.63 -0.14 -1.90 16 13 C -0.12 -1.43 5.81 -26.77 -0.16 -1.59 16 14 C -0.11 -1.20 5.94 -26.63 -0.16 -1.36 16 15 C -0.12 -1.54 5.80 -27.48 -0.16 -1.70 16 16 C 0.10 1.81 6.16 -78.35 -0.48 1.33 16 17 N -0.17 -3.71 8.61 35.87 0.31 -3.40 16 18 N -0.60 -10.42 6.07 31.22 0.19 -10.23 16 19 C 0.54 9.98 7.97 -10.99 -0.09 9.89 16 20 O -0.47 -11.67 16.20 5.54 0.09 -11.58 16 21 C -0.13 -1.60 6.42 36.01 0.23 -1.37 16 22 S -0.16 -2.22 20.86 -107.50 -2.24 -4.46 16 23 C -0.07 -0.69 6.07 36.00 0.22 -0.47 16 24 C -0.07 -0.72 5.14 -104.63 -0.54 -1.26 16 25 C -0.10 -0.99 9.70 -39.59 -0.38 -1.37 16 26 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 27 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 28 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 29 C -0.10 -1.01 9.70 -39.58 -0.38 -1.39 16 30 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 31 H 0.02 0.68 8.06 -51.93 -0.42 0.27 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.65 5.83 -51.93 -0.30 0.35 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.37 4.67 6.35 -182.60 -1.16 3.51 16 42 H 0.11 1.04 8.14 -51.92 -0.42 0.62 16 43 H 0.11 0.98 8.14 -51.92 -0.42 0.56 16 44 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 45 H 0.09 0.69 8.08 -51.92 -0.42 0.27 16 46 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 47 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 48 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 49 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 50 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 421.60 15.07 6.35 6.35 Total: -1.00 -39.08 421.60 -12.52 -51.60 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -9.02 Total: -1.20 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -3.92 Total: -18.06 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 1.23 Total: -41.86 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -5.02 Total: 19.21 kcal Atomic # 16 Polarization: -2.22 SS G_CDS: -2.24 Total: -4.46 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -39.08 -12.52 -51.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408719453.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.878 kcal (2) G-P(sol) polarization free energy of solvation -39.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds