Wall clock time and date at job start Tue Mar 31 2020 06:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47008 * 2 1 4 4 C 1.35957 * 117.00097 * 180.02562 * 3 2 1 5 5 C 1.37997 * 120.05475 * 0.21392 * 4 3 2 6 6 C 1.40276 * 119.69176 * 180.29792 * 5 4 3 7 7 C 1.46384 * 120.09744 * 179.69809 * 6 5 4 8 8 C 1.37863 * 119.99970 * 151.40849 * 7 6 5 9 9 C 1.43207 * 119.99711 * 352.75844 * 8 7 6 10 10 N 7.30742 * 159.87071 * 312.23827 * 2 1 3 11 11 C 1.47114 * 120.00205 * 172.76168 * 8 7 6 12 12 O 1.21656 * 119.99908 * 359.97438 * 11 8 7 13 13 N 1.34779 * 120.00202 * 179.97438 * 11 8 7 14 14 C 1.46492 * 120.00041 * 179.97438 * 13 11 8 15 15 C 1.52999 * 109.46979 * 180.02562 * 14 13 11 16 16 O 1.42896 * 109.47324 * 64.99880 * 15 14 13 17 17 C 1.42903 * 114.00297 * 179.97438 * 16 15 14 18 18 C 1.40288 * 119.80142 * 359.72067 * 6 5 4 19 19 C 1.36532 * 120.10221 * 0.02562 * 18 6 5 20 20 C 1.39151 * 120.31346 * 0.02562 * 19 18 6 21 21 O 1.35540 * 119.89867 * 179.97438 * 20 19 18 22 22 C 1.34725 * 117.00397 * 353.91580 * 21 20 19 23 23 H 1.08005 * 119.99665 * 5.09687 * 22 21 20 24 24 C 1.38758 * 120.00249 * 185.08692 * 22 21 20 25 25 N 1.31481 * 120.00135 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00123 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47135 * 0.02562 * 26 24 22 28 28 H 1.48508 * 109.47002 * 120.00172 * 26 24 22 29 29 H 1.48493 * 109.47277 * 240.00315 * 26 24 22 30 30 H 1.09001 * 109.47017 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47183 * 299.99607 * 1 2 3 32 32 H 1.09001 * 109.47319 * 59.99867 * 1 2 3 33 33 H 1.08998 * 109.47183 * 240.00393 * 2 1 3 34 34 H 1.09001 * 109.47319 * 120.00133 * 2 1 3 35 35 H 1.08005 * 120.14898 * 0.02562 * 5 4 3 36 36 H 1.07997 * 120.00327 * 331.41054 * 7 6 5 37 37 H 0.97002 * 119.99319 * 0.02562 * 13 11 8 38 38 H 1.09004 * 109.47438 * 300.00080 * 14 13 11 39 39 H 1.08999 * 109.47536 * 60.00219 * 14 13 11 40 40 H 1.09008 * 109.47296 * 185.00244 * 15 14 13 41 41 H 1.09007 * 109.46998 * 304.99656 * 15 14 13 42 42 H 1.08994 * 109.47779 * 180.02562 * 17 16 15 43 43 H 1.09003 * 109.46784 * 300.00424 * 17 16 15 44 44 H 1.09000 * 109.47065 * 59.99638 * 17 16 15 45 45 H 1.07998 * 119.94879 * 180.02562 * 18 6 5 46 46 H 1.08000 * 119.84592 * 179.97438 * 19 18 6 47 47 H 0.96994 * 120.00339 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3541 1.5255 -0.0005 5 6 4.1958 0.4319 -0.0055 6 6 5.5853 0.6245 0.0003 7 6 6.4863 -0.5291 0.0018 8 6 7.7391 -0.4261 -0.5645 9 6 8.1022 0.7544 -1.2894 10 7 8.3911 1.6905 -1.8618 11 6 8.7027 -1.5288 -0.4242 12 8 8.3943 -2.5314 0.1919 13 7 9.9273 -1.4283 -0.9782 14 6 10.8870 -2.5261 -0.8380 15 6 12.1890 -2.1596 -1.5531 16 8 12.7939 -1.0427 -0.8985 17 6 14.0233 -0.6178 -1.4904 18 6 6.1087 1.9261 0.0052 19 6 5.2684 3.0021 0.0048 20 6 3.8893 2.8163 0.0001 21 8 3.0628 3.8905 0.0003 22 6 3.6354 5.1029 0.1324 23 1 4.7116 5.1928 0.1491 24 6 2.8426 6.2359 0.2467 25 7 1.5325 6.1264 0.2266 26 14 3.6365 7.9167 0.4305 27 1 5.1142 7.7695 0.4249 28 1 3.2219 8.7863 -0.6998 29 1 3.2047 8.5308 1.7117 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.7866 -0.5676 -0.0094 36 1 6.1698 -1.4610 0.4464 37 1 10.1732 -0.6286 -1.4692 38 1 11.0896 -2.6989 0.2190 39 1 10.4712 -3.4311 -1.2809 40 1 12.8706 -3.0099 -1.5254 41 1 11.9737 -1.9003 -2.5898 42 1 14.4187 0.2331 -0.9359 43 1 14.7426 -1.4363 -1.4610 44 1 13.8464 -0.3267 -2.5259 45 1 7.1781 2.0771 0.0092 46 1 5.6758 4.0023 0.0090 47 1 0.9783 6.9183 0.3069 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408815486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:30 Heat of formation + Delta-G solvation = -68.701143 kcal Electronic energy + Delta-G solvation = -30757.202380 eV Core-core repulsion = 26293.598598 eV Total energy + Delta-G solvation = -4463.603782 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.156 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.05073 -39.69075 -38.28321 -37.93261 -37.28948 -35.91107 -34.82471 -33.21009 -32.47106 -31.45281 -30.36672 -29.60853 -28.27700 -26.68465 -25.82014 -24.26730 -23.46608 -22.80917 -21.49963 -20.98800 -20.83811 -18.73182 -18.33928 -17.51485 -17.06998 -16.81880 -16.49292 -15.70282 -15.59755 -15.40278 -15.27565 -15.13888 -14.79779 -14.74216 -14.18670 -14.11497 -13.93107 -13.81637 -13.37799 -13.29569 -12.94510 -12.73780 -12.57045 -12.52289 -12.45999 -12.38923 -12.19711 -12.10168 -11.84425 -11.59787 -11.56401 -11.37815 -11.16541 -11.08392 -10.71559 -10.55442 -10.45253 -10.18522 -9.95584 -9.73561 -9.41999 -9.20527 -8.93342 -8.10839 -7.05617 -6.78358 -4.24372 0.52519 2.06189 2.25634 2.81436 2.90820 2.98832 2.99808 3.06280 3.12638 3.35665 3.72688 3.73229 3.81767 4.21867 4.31547 4.51465 4.71705 4.75298 4.84055 4.87979 4.89606 4.98263 5.00856 5.18183 5.23307 5.27243 5.29317 5.36800 5.42527 5.49097 5.50820 5.58945 5.70296 5.81282 5.97408 6.03032 6.14113 6.18917 6.28320 6.30310 6.38944 6.68875 6.70088 6.83800 6.95773 7.11609 7.35664 7.40829 7.63436 7.75857 8.01138 8.19592 8.64275 9.31316 10.36189 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.009703 B = 0.002319 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.095188 B =12072.365623 C =14725.502559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.301 6.301 4 C 0.054 3.946 5 C -0.124 4.124 6 C -0.200 4.200 7 C 0.120 3.880 8 C -0.205 4.205 9 C 0.264 3.736 10 N -0.435 5.435 11 C 0.584 3.416 12 O -0.547 6.547 13 N -0.728 5.728 14 C 0.124 3.876 15 C 0.046 3.954 16 O -0.388 6.388 17 C 0.031 3.969 18 C -0.044 4.044 19 C -0.224 4.224 20 C 0.155 3.845 21 O -0.134 6.134 22 C -0.385 4.385 23 H 0.102 0.898 24 C 0.042 3.958 25 N -0.834 5.834 26 Si 0.947 3.053 27 H -0.262 1.262 28 H -0.272 1.272 29 H -0.271 1.271 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.402 0.598 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.116 0.884 46 H 0.138 0.862 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.252 -15.064 -2.238 20.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.216 6.216 4 C 0.009 3.991 5 C -0.144 4.144 6 C -0.202 4.202 7 C 0.096 3.904 8 C -0.212 4.212 9 C -0.049 4.049 10 N -0.113 5.113 11 C 0.374 3.626 12 O -0.426 6.426 13 N -0.380 5.380 14 C 0.001 3.999 15 C -0.031 4.031 16 O -0.307 6.307 17 C -0.066 4.066 18 C -0.063 4.063 19 C -0.244 4.244 20 C 0.096 3.904 21 O -0.033 6.033 22 C -0.460 4.460 23 H 0.119 0.881 24 C -0.166 4.166 25 N -0.464 5.464 26 Si 0.771 3.229 27 H -0.186 1.186 28 H -0.197 1.197 29 H -0.197 1.197 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.146 0.854 36 H 0.167 0.833 37 H 0.237 0.763 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.134 0.866 46 H 0.155 0.845 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.779 -13.895 -2.539 19.048 hybrid contribution 0.745 0.558 -0.231 0.959 sum 13.524 -13.336 -2.770 19.195 Atomic orbital electron populations 1.21732 0.93311 1.01981 1.03711 1.22651 0.95635 0.83242 1.00561 1.86235 1.18346 1.27326 1.89654 1.17944 0.82675 0.91135 1.07387 1.20858 0.92275 0.96850 1.04391 1.18119 0.92140 0.92050 1.17879 1.22974 0.88406 0.96597 0.82428 1.17764 0.97961 0.92106 1.13407 1.25369 0.93713 0.92649 0.93154 1.81224 1.08237 1.10177 1.11635 1.17550 0.81067 0.85878 0.78142 1.90792 1.78109 1.31132 1.42589 1.45768 1.13966 1.21122 1.57102 1.21360 0.86444 0.90095 1.02046 1.22847 0.94211 0.89790 0.96241 1.87958 1.37866 1.49216 1.55647 1.22770 0.85707 0.99837 0.98249 1.20943 0.98965 0.91384 0.95049 1.20548 0.91539 1.00031 1.12273 1.18972 0.89481 0.86212 0.95764 1.83934 1.33705 1.12753 1.72881 1.21729 0.93446 0.80305 1.50504 0.88076 1.25504 0.95420 0.99919 0.95766 1.70031 1.03713 1.31280 1.41365 0.85537 0.79415 0.79321 0.78663 1.18583 1.19690 1.19656 0.91010 0.91546 0.91602 0.92754 0.92637 0.85403 0.83344 0.76293 0.90334 0.89674 0.91461 0.92496 0.89423 0.93981 0.93937 0.86613 0.84477 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 10.28 37.16 0.38 -1.48 16 2 C 0.05 0.79 5.46 37.16 0.20 0.99 16 3 O -0.30 -6.14 9.92 -34.14 -0.34 -6.48 16 4 C 0.05 1.11 6.70 -39.11 -0.26 0.85 16 5 C -0.12 -2.10 8.79 -38.90 -0.34 -2.44 16 6 C -0.20 -3.36 5.60 -105.08 -0.59 -3.94 16 7 C 0.12 1.66 9.46 -36.44 -0.34 1.32 16 8 C -0.20 -2.88 5.84 -104.51 -0.61 -3.49 16 9 C 0.26 4.09 10.46 -22.52 -0.24 3.86 16 10 N -0.44 -7.50 17.86 41.78 0.75 -6.75 16 11 C 0.58 7.92 7.75 -12.66 -0.10 7.82 16 12 O -0.55 -8.50 16.31 5.23 0.09 -8.42 16 13 N -0.73 -8.21 5.45 -61.48 -0.34 -8.55 16 14 C 0.12 1.11 6.06 -4.05 -0.02 1.08 16 15 C 0.05 0.33 6.07 37.16 0.23 0.55 16 16 O -0.39 -3.62 10.65 -35.23 -0.38 -4.00 16 17 C 0.03 0.20 11.01 101.05 1.11 1.31 16 18 C -0.04 -0.83 8.26 -39.43 -0.33 -1.16 16 19 C -0.22 -4.78 9.09 -39.86 -0.36 -5.14 16 20 C 0.15 3.63 6.67 -38.68 -0.26 3.37 16 21 O -0.13 -3.67 9.52 -13.54 -0.13 -3.80 16 22 C -0.38 -10.18 9.48 30.92 0.29 -9.89 16 23 H 0.10 2.47 5.18 -52.48 -0.27 2.20 16 24 C 0.04 1.10 5.50 -17.51 -0.10 1.00 16 25 N -0.83 -23.02 13.67 55.48 0.76 -22.26 16 26 Si 0.95 19.33 29.55 -169.99 -5.02 14.30 16 27 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 28 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 29 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.69 7.65 -51.93 -0.40 0.30 16 34 H 0.06 0.70 7.67 -51.93 -0.40 0.30 16 35 H 0.13 1.72 6.29 -52.48 -0.33 1.39 16 36 H 0.15 1.75 7.61 -52.49 -0.40 1.35 16 37 H 0.40 4.44 7.35 -40.82 -0.30 4.14 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 44 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.12 2.07 5.24 -52.49 -0.27 1.80 16 46 H 0.14 2.92 5.61 -52.49 -0.29 2.63 16 47 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 409.08 15.07 6.16 6.16 Total: -1.00 -32.20 409.08 -5.81 -38.01 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.03 Total: 7.15 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -1.33 Total: -5.38 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 1.17 Total: -37.56 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.76 Total: -22.70 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.20 -5.81 -38.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408815486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.689 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds