Wall clock time and date at job start Tue Mar 31 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30703 * 1 3 3 Si 1.86802 * 120.00140 * 2 1 4 4 H 1.48498 * 109.47209 * 270.00240 * 3 2 1 5 5 H 1.48503 * 109.46890 * 29.99962 * 3 2 1 6 6 H 1.48503 * 109.47199 * 149.99942 * 3 2 1 7 7 C 1.40034 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00305 * 179.97438 * 7 2 1 9 9 C 1.39838 * 119.99533 * 0.02562 * 7 2 1 10 10 O 1.22086 * 120.00273 * 359.97438 * 9 7 2 11 11 N 1.34780 * 119.99931 * 180.02562 * 9 7 2 12 12 N 1.40098 * 120.00293 * 179.97438 * 11 9 7 13 13 C 1.30906 * 120.00395 * 179.97438 * 12 11 9 14 14 C 1.46356 * 120.00242 * 179.97438 * 13 12 11 15 15 C 1.40597 * 120.08452 * 180.02562 * 14 13 12 16 16 C 1.36232 * 119.91322 * 179.97438 * 15 14 13 17 17 C 1.39901 * 120.08737 * 359.97438 * 16 15 14 18 18 S 1.76195 * 119.91414 * 179.97438 * 17 16 15 19 19 C 1.76208 * 99.99750 * 94.79545 * 18 17 16 20 20 C 1.39161 * 120.07952 * 354.48601 * 19 18 17 21 21 C 1.38001 * 119.91716 * 180.23556 * 20 19 18 22 22 C 1.38484 * 120.08017 * 359.49570 * 21 20 19 23 23 Cl 1.73598 * 119.92011 * 180.27734 * 22 21 20 24 24 C 1.38491 * 120.16344 * 0.25358 * 22 21 20 25 25 C 1.37996 * 120.08024 * 0.02562 * 24 22 21 26 26 C 1.39893 * 120.16434 * 0.27365 * 17 16 15 27 27 C 1.36235 * 120.08867 * 359.44313 * 26 17 16 28 28 H 0.97001 * 120.00003 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99739 * 359.97438 * 11 9 7 30 30 H 1.07995 * 119.99788 * 0.02562 * 13 12 11 31 31 H 1.08004 * 120.04340 * 359.97438 * 15 14 13 32 32 H 1.07995 * 119.95935 * 179.97438 * 16 15 14 33 33 H 1.08004 * 120.04793 * 359.97438 * 20 19 18 34 34 H 1.08000 * 119.96420 * 179.77352 * 21 20 19 35 35 H 1.07998 * 119.95959 * 180.02562 * 24 22 21 36 36 H 1.07996 * 120.04059 * 179.97438 * 25 24 22 37 37 H 1.08004 * 119.95044 * 179.70047 * 26 17 16 38 38 H 1.08003 * 120.04568 * 180.26829 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 2.4885 2.0465 -1.4000 5 1 1.4385 2.6527 0.7001 6 1 3.5387 1.4402 0.7001 7 6 2.0073 -1.2127 -0.0005 8 1 3.0872 -1.2127 -0.0010 9 6 1.3081 -2.4237 -0.0016 10 8 0.0872 -2.4237 -0.0016 11 7 1.9820 -3.5909 -0.0016 12 7 1.2815 -4.8042 -0.0022 13 6 1.9360 -5.9379 -0.0027 14 6 1.2043 -7.2054 -0.0027 15 6 1.9055 -8.4241 -0.0027 16 6 1.2208 -9.6018 -0.0021 17 6 -0.1782 -9.5998 -0.0011 18 16 -1.0591 -11.1258 -0.0011 19 6 -1.3363 -11.3189 1.7283 20 6 -0.7709 -10.4221 2.6298 21 6 -0.9862 -10.5794 3.9838 22 6 -1.7724 -11.6220 4.4451 23 17 -2.0464 -11.8117 6.1488 24 6 -2.3410 -12.5134 3.5506 25 6 -2.1254 -12.3658 2.1956 26 6 -0.8794 -8.3893 -0.0063 27 6 -0.2017 -7.2075 -0.0010 28 1 -0.4850 0.8401 0.0004 29 1 2.9519 -3.5909 -0.0012 30 1 3.0160 -5.9379 -0.0023 31 1 2.9855 -8.4265 -0.0031 32 1 1.7587 -10.5383 -0.0026 33 1 -0.1609 -9.6065 2.2706 34 1 -0.5448 -9.8860 4.6843 35 1 -2.9538 -13.3250 3.9139 36 1 -2.5687 -13.0615 1.4987 37 1 -1.9594 -8.3918 -0.0103 38 1 -0.7438 -6.2733 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409072515.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:38 Heat of formation + Delta-G solvation = 49.248561 kcal Electronic energy + Delta-G solvation = -24268.797780 eV Core-core repulsion = 20422.104527 eV Total energy + Delta-G solvation = -3846.693253 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 360.044 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -39.46339 -39.10561 -37.73124 -36.70179 -35.37344 -32.84403 -32.15232 -31.37413 -31.30986 -30.97507 -29.43256 -26.75703 -24.17344 -23.06835 -22.97051 -22.61819 -20.88229 -19.82954 -18.42697 -17.84772 -17.36020 -16.44258 -16.28031 -15.77299 -15.58478 -15.31203 -14.64091 -14.59469 -14.20273 -14.02895 -13.88998 -13.76644 -13.55679 -13.49142 -12.84500 -12.77744 -12.64075 -12.08921 -11.96852 -11.69395 -11.51786 -11.43552 -11.20437 -11.12735 -11.04169 -10.76149 -10.62751 -10.45333 -9.79880 -9.72067 -9.42292 -9.22811 -9.15068 -8.93120 -7.89329 -7.65572 -7.45668 -6.50468 -5.08405 0.45552 0.68929 0.95629 1.41126 1.49059 1.86983 2.13558 2.67701 2.98915 3.04404 3.08729 3.22654 3.54146 3.82934 3.98419 4.33176 4.43172 4.53244 4.72081 4.84170 4.92759 4.96499 5.04713 5.21659 5.29350 5.39108 5.58445 5.60757 5.64687 5.72096 5.74192 5.89916 5.91038 5.94209 6.16258 6.23173 6.36182 6.43053 6.65647 6.80554 7.10169 7.71422 7.85306 8.46265 8.65016 9.14507 10.27368 10.51089 Molecular weight = 360.04amu Principal moments of inertia in cm(-1) A = 0.013534 B = 0.001763 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.423004 B =15873.878494 C =17148.337279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.087 3.913 3 Si 0.919 3.081 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.532 4.532 8 H 0.072 0.928 9 C 0.554 3.446 10 O -0.553 6.553 11 N -0.581 5.581 12 N -0.170 5.170 13 C -0.005 4.005 14 C 0.026 3.974 15 C -0.123 4.123 16 C -0.062 4.062 17 C -0.165 4.165 18 S 0.002 5.998 19 C -0.094 4.094 20 C -0.108 4.108 21 C -0.091 4.091 22 C -0.043 4.043 23 Cl -0.073 7.073 24 C -0.095 4.095 25 C -0.093 4.093 26 C -0.060 4.060 27 C -0.106 4.106 28 H 0.276 0.724 29 H 0.371 0.629 30 H 0.111 0.889 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.801 -24.122 4.513 24.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.138 4.138 3 Si 0.742 3.258 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.569 4.569 8 H 0.090 0.910 9 C 0.363 3.637 10 O -0.432 6.432 11 N -0.327 5.327 12 N 0.018 4.982 13 C -0.212 4.212 14 C 0.024 3.976 15 C -0.145 4.145 16 C -0.083 4.083 17 C -0.278 4.278 18 S 0.252 5.748 19 C -0.207 4.207 20 C -0.132 4.132 21 C -0.111 4.111 22 C -0.072 4.072 23 Cl -0.045 7.045 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.080 4.080 27 C -0.128 4.128 28 H 0.087 0.913 29 H 0.207 0.793 30 H 0.128 0.872 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.435 -24.063 3.571 24.369 hybrid contribution 2.283 1.451 1.228 2.971 sum 0.848 -22.612 4.799 23.131 Atomic orbital electron populations 1.70055 1.07355 1.28250 1.31030 1.25770 0.94736 1.00821 0.92436 0.86180 0.80100 0.80281 0.79197 1.19337 1.20030 1.18585 1.19554 0.94650 0.89733 1.52948 0.90995 1.16636 0.87969 0.80289 0.78790 1.90768 1.13273 1.85114 1.54067 1.48255 1.07642 1.01754 1.75063 1.74887 1.28112 0.93079 1.02080 1.23900 0.96925 0.90652 1.09727 1.18909 0.92909 0.91221 0.94599 1.21003 1.00102 0.90983 1.02455 1.21109 0.92350 0.98463 0.96342 1.22038 0.96266 0.96431 1.13059 1.84315 1.67528 1.22594 1.00323 1.22366 1.00783 0.98734 0.98773 1.21355 1.00296 0.99333 0.92235 1.21017 0.97535 0.96777 0.95788 1.20972 1.02388 0.98935 0.84940 1.98372 1.95436 1.97221 1.13426 1.20945 0.99672 0.98799 0.92148 1.20733 0.98498 0.97573 0.94922 1.21275 1.00167 0.91054 0.95521 1.21393 0.93581 0.98917 0.98933 0.91318 0.79318 0.87156 0.85039 0.85099 0.84375 0.84649 0.84614 0.84657 0.85104 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.12 11.69 55.55 0.65 -20.47 16 2 C 0.09 2.28 5.49 -17.36 -0.10 2.19 16 3 Si 0.92 18.79 29.56 -169.99 -5.02 13.77 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.53 -14.26 9.21 -38.31 -0.35 -14.61 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 9 C 0.55 15.57 7.62 -15.66 -0.12 15.45 16 10 O -0.55 -17.95 15.17 4.84 0.07 -17.87 16 11 N -0.58 -13.26 6.26 28.76 0.18 -13.08 16 12 N -0.17 -3.59 10.19 32.07 0.33 -3.27 16 13 C 0.00 -0.08 10.74 -14.68 -0.16 -0.24 16 14 C 0.03 0.36 5.89 -104.85 -0.62 -0.26 16 15 C -0.12 -1.32 9.75 -39.41 -0.38 -1.71 16 16 C -0.06 -0.63 9.44 -39.68 -0.37 -1.01 16 17 C -0.17 -1.84 3.55 -38.34 -0.14 -1.97 16 18 S 0.00 0.02 22.04 -107.50 -2.37 -2.35 16 19 C -0.09 -0.95 6.11 -38.89 -0.24 -1.19 16 20 C -0.11 -1.14 9.25 -39.33 -0.36 -1.50 16 21 C -0.09 -0.90 9.82 -39.58 -0.39 -1.29 16 22 C -0.04 -0.41 6.33 -39.40 -0.25 -0.66 16 23 Cl -0.07 -0.67 28.95 -51.86 -1.50 -2.17 16 24 C -0.10 -0.80 9.82 -39.58 -0.39 -1.19 16 25 C -0.09 -0.81 9.80 -39.32 -0.39 -1.20 16 26 C -0.06 -0.74 9.48 -39.68 -0.38 -1.11 16 27 C -0.11 -1.54 9.53 -39.41 -0.38 -1.92 16 28 H 0.28 7.04 8.29 -40.82 -0.34 6.70 16 29 H 0.37 7.02 8.61 -182.60 -1.57 5.45 16 30 H 0.11 1.43 8.03 -52.49 -0.42 1.01 16 31 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.14 1.52 5.75 -52.48 -0.30 1.22 16 34 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 38 H 0.14 2.40 7.54 -52.48 -0.40 2.01 16 LS Contribution 371.44 15.07 5.60 5.60 Total: -1.00 -33.26 371.44 -11.85 -45.11 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -4.78 Total: 6.94 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -5.00 Total: -12.20 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 1.16 Total: -36.82 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.07 Total: -17.87 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.77 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -2.37 Total: -2.35 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.26 -11.85 -45.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409072515.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.359 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds