Wall clock time and date at job start Tue Mar 31 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30703 * 1 3 3 Si 1.86802 * 120.00140 * 2 1 4 4 H 1.48498 * 109.47209 * 270.00240 * 3 2 1 5 5 H 1.48503 * 109.46890 * 29.99962 * 3 2 1 6 6 H 1.48503 * 109.47199 * 149.99942 * 3 2 1 7 7 C 1.40034 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00305 * 179.97438 * 7 2 1 9 9 C 1.39838 * 119.99533 * 0.02562 * 7 2 1 10 10 O 1.22086 * 120.00273 * 359.97438 * 9 7 2 11 11 N 1.34780 * 119.99931 * 180.02562 * 9 7 2 12 12 N 1.40098 * 120.00293 * 179.97438 * 11 9 7 13 13 C 1.30906 * 120.00395 * 179.97438 * 12 11 9 14 14 C 1.46356 * 120.00242 * 179.97438 * 13 12 11 15 15 C 1.40597 * 120.08452 * 180.02562 * 14 13 12 16 16 C 1.36232 * 119.91322 * 179.97438 * 15 14 13 17 17 C 1.39901 * 120.08737 * 359.97438 * 16 15 14 18 18 S 1.76195 * 119.91414 * 179.97438 * 17 16 15 19 19 C 1.76208 * 99.99750 * 94.79545 * 18 17 16 20 20 C 1.39161 * 120.07952 * 354.48601 * 19 18 17 21 21 C 1.38001 * 119.91716 * 180.23556 * 20 19 18 22 22 C 1.38484 * 120.08017 * 359.49570 * 21 20 19 23 23 Cl 1.73598 * 119.92011 * 180.27734 * 22 21 20 24 24 C 1.38491 * 120.16344 * 0.25358 * 22 21 20 25 25 C 1.37996 * 120.08024 * 0.02562 * 24 22 21 26 26 C 1.39893 * 120.16434 * 0.27365 * 17 16 15 27 27 C 1.36235 * 120.08867 * 359.44313 * 26 17 16 28 28 H 0.97001 * 120.00003 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99739 * 359.97438 * 11 9 7 30 30 H 1.07995 * 119.99788 * 0.02562 * 13 12 11 31 31 H 1.08004 * 120.04340 * 359.97438 * 15 14 13 32 32 H 1.07995 * 119.95935 * 179.97438 * 16 15 14 33 33 H 1.08004 * 120.04793 * 359.97438 * 20 19 18 34 34 H 1.08000 * 119.96420 * 179.77352 * 21 20 19 35 35 H 1.07998 * 119.95959 * 180.02562 * 24 22 21 36 36 H 1.07996 * 120.04059 * 179.97438 * 25 24 22 37 37 H 1.08004 * 119.95044 * 179.70047 * 26 17 16 38 38 H 1.08003 * 120.04568 * 180.26829 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 2.4885 2.0465 -1.4000 5 1 1.4385 2.6527 0.7001 6 1 3.5387 1.4402 0.7001 7 6 2.0073 -1.2127 -0.0005 8 1 3.0872 -1.2127 -0.0010 9 6 1.3081 -2.4237 -0.0016 10 8 0.0872 -2.4237 -0.0016 11 7 1.9820 -3.5909 -0.0016 12 7 1.2815 -4.8042 -0.0022 13 6 1.9360 -5.9379 -0.0027 14 6 1.2043 -7.2054 -0.0027 15 6 1.9055 -8.4241 -0.0027 16 6 1.2208 -9.6018 -0.0021 17 6 -0.1782 -9.5998 -0.0011 18 16 -1.0591 -11.1258 -0.0011 19 6 -1.3363 -11.3189 1.7283 20 6 -0.7709 -10.4221 2.6298 21 6 -0.9862 -10.5794 3.9838 22 6 -1.7724 -11.6220 4.4451 23 17 -2.0464 -11.8117 6.1488 24 6 -2.3410 -12.5134 3.5506 25 6 -2.1254 -12.3658 2.1956 26 6 -0.8794 -8.3893 -0.0063 27 6 -0.2017 -7.2075 -0.0010 28 1 -0.4850 0.8401 0.0004 29 1 2.9519 -3.5909 -0.0012 30 1 3.0160 -5.9379 -0.0023 31 1 2.9855 -8.4265 -0.0031 32 1 1.7587 -10.5383 -0.0026 33 1 -0.1609 -9.6065 2.2706 34 1 -0.5448 -9.8860 4.6843 35 1 -2.9538 -13.3250 3.9139 36 1 -2.5687 -13.0615 1.4987 37 1 -1.9594 -8.3918 -0.0103 38 1 -0.7438 -6.2733 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409072515.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:37 Heat of formation + Delta-G solvation = 29.940785 kcal Electronic energy + Delta-G solvation = -24269.635028 eV Core-core repulsion = 20422.104527 eV Total energy + Delta-G solvation = -3847.530501 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 360.044 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.37083 -39.99814 -39.56361 -37.42934 -37.01471 -34.77262 -33.61295 -32.31908 -32.16154 -31.77349 -30.85744 -28.60731 -25.38630 -23.81223 -23.78963 -23.63522 -22.42771 -21.38610 -19.57333 -19.20337 -18.26588 -17.91094 -17.69688 -17.09419 -16.57555 -16.25317 -15.86289 -15.70079 -15.39090 -15.25962 -14.91954 -14.71795 -14.64649 -14.61302 -14.47367 -14.01353 -13.64339 -13.29827 -13.05679 -12.83651 -12.77935 -12.71954 -12.64415 -12.42285 -12.19766 -12.03901 -11.84135 -11.57745 -11.09137 -11.02858 -10.55437 -10.33016 -10.16369 -10.09350 -10.03328 -9.03016 -8.46223 -8.42701 -7.15389 -0.58765 -0.06380 0.23187 0.44425 0.60787 1.11636 1.17197 1.37895 1.38950 1.56296 1.57472 2.00408 2.30398 2.37615 2.49098 2.79595 3.61516 3.68000 3.73018 3.81100 3.84282 3.95565 4.21451 4.29443 4.32182 4.33384 4.51153 4.53333 4.68501 4.86537 4.88840 4.99627 5.07531 5.14990 5.15700 5.19012 5.23568 5.31655 5.52165 5.64772 5.77916 5.79214 5.97411 6.63758 6.86153 7.38948 8.36561 8.54299 Molecular weight = 360.04amu Principal moments of inertia in cm(-1) A = 0.013534 B = 0.001763 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.423004 B =15873.878494 C =17148.337279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.029 3.971 3 Si 1.010 2.990 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.244 1.244 7 C -0.558 4.558 8 H 0.097 0.903 9 C 0.542 3.458 10 O -0.617 6.617 11 N -0.591 5.591 12 N -0.251 5.251 13 C 0.051 3.949 14 C -0.011 4.011 15 C -0.094 4.094 16 C -0.059 4.059 17 C -0.155 4.155 18 S 0.020 5.980 19 C -0.106 4.106 20 C -0.119 4.119 21 C -0.101 4.101 22 C -0.050 4.050 23 Cl -0.072 7.072 24 C -0.092 4.092 25 C -0.091 4.091 26 C -0.069 4.069 27 C -0.117 4.117 28 H 0.282 0.718 29 H 0.386 0.614 30 H 0.149 0.851 31 H 0.169 0.831 32 H 0.163 0.837 33 H 0.130 0.870 34 H 0.139 0.861 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.134 0.866 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.076 -26.808 4.618 27.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.190 4.190 3 Si 0.828 3.172 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.167 1.167 7 C -0.594 4.594 8 H 0.115 0.885 9 C 0.352 3.648 10 O -0.503 6.503 11 N -0.337 5.337 12 N -0.059 5.059 13 C -0.158 4.158 14 C -0.013 4.013 15 C -0.116 4.116 16 C -0.080 4.080 17 C -0.267 4.267 18 S 0.270 5.730 19 C -0.219 4.219 20 C -0.143 4.143 21 C -0.122 4.122 22 C -0.080 4.080 23 Cl -0.043 7.043 24 C -0.113 4.113 25 C -0.115 4.115 26 C -0.089 4.089 27 C -0.139 4.139 28 H 0.092 0.908 29 H 0.225 0.775 30 H 0.166 0.834 31 H 0.187 0.813 32 H 0.181 0.819 33 H 0.148 0.852 34 H 0.157 0.843 35 H 0.177 0.823 36 H 0.175 0.825 37 H 0.152 0.848 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.885 -26.801 3.680 27.067 hybrid contribution 1.530 1.755 1.241 2.639 sum 2.415 -25.046 4.921 25.639 Atomic orbital electron populations 1.70229 1.09971 1.29855 1.32524 1.27161 0.95564 1.05488 0.90829 0.84839 0.78751 0.73866 0.79764 1.18228 1.19485 1.16683 1.20123 0.96000 0.90133 1.53118 0.88472 1.16994 0.87445 0.82225 0.78110 1.90700 1.15781 1.86727 1.57089 1.47370 1.07902 1.01703 1.76691 1.74991 1.29203 0.93532 1.08157 1.24647 0.98959 0.89976 1.02200 1.19012 0.92605 0.91623 0.98088 1.21346 1.01787 0.89398 0.99109 1.21515 0.91876 0.99599 0.94978 1.22306 0.97204 0.96632 1.10588 1.84246 1.67626 1.20824 1.00320 1.22452 1.01516 0.99354 0.98535 1.21310 1.00881 0.99473 0.92627 1.21117 0.97975 0.97255 0.95813 1.21119 1.02447 0.99095 0.85303 1.98374 1.95400 1.97190 1.13313 1.21235 0.99202 0.98905 0.91909 1.21019 0.97696 0.97289 0.95457 1.21287 1.00461 0.91019 0.96170 1.21218 0.94405 0.98303 1.00015 0.90779 0.77536 0.83417 0.81333 0.81915 0.85248 0.84336 0.82344 0.82477 0.84835 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.97 11.69 21.84 0.26 -47.71 16 2 C 0.03 1.54 5.49 85.30 0.47 2.01 16 3 Si 1.01 38.79 29.56 68.60 2.03 40.81 16 4 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 5 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 6 H -0.24 -8.56 7.11 99.48 0.71 -7.85 16 7 C -0.56 -30.86 9.21 23.09 0.21 -30.65 16 8 H 0.10 4.65 7.85 -2.91 -0.02 4.62 16 9 C 0.54 32.31 7.62 84.63 0.65 32.96 16 10 O -0.62 -43.20 15.17 -5.60 -0.08 -43.29 16 11 N -0.59 -28.24 6.26 -180.99 -1.13 -29.37 16 12 N -0.25 -11.16 10.19 -52.44 -0.53 -11.69 16 13 C 0.05 1.60 10.74 86.94 0.93 2.53 16 14 C -0.01 -0.29 5.89 -20.01 -0.12 -0.41 16 15 C -0.09 -1.69 9.75 22.38 0.22 -1.48 16 16 C -0.06 -0.99 9.44 22.21 0.21 -0.78 16 17 C -0.15 -3.14 3.55 23.07 0.08 -3.05 16 18 S 0.02 0.34 22.04 -56.49 -1.25 -0.90 16 19 C -0.11 -1.92 6.11 22.72 0.14 -1.78 16 20 C -0.12 -2.35 9.25 22.44 0.21 -2.15 16 21 C -0.10 -1.92 9.82 22.27 0.22 -1.70 16 22 C -0.05 -0.88 6.33 22.39 0.14 -0.74 16 23 Cl -0.07 -1.21 28.95 -2.72 -0.08 -1.28 16 24 C -0.09 -1.33 9.82 22.27 0.22 -1.11 16 25 C -0.09 -1.33 9.80 22.44 0.22 -1.11 16 26 C -0.07 -1.71 9.48 22.20 0.21 -1.50 16 27 C -0.12 -3.55 9.53 22.38 0.21 -3.34 16 28 H 0.28 15.12 8.29 -92.71 -0.77 14.35 16 29 H 0.39 14.97 8.61 -213.32 -1.84 13.13 16 30 H 0.15 3.39 8.03 -2.91 -0.02 3.37 16 31 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.13 2.72 5.75 -2.91 -0.02 2.70 16 34 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 35 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 38 H 0.11 4.03 7.54 -2.91 -0.02 4.01 16 Total: -1.00 -79.94 371.44 2.72 -77.23 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: -0.71 Total: 28.50 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 4.22 Total: -12.30 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -1.41 Total: -88.77 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -0.08 Total: -43.29 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.81 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -1.25 Total: -0.90 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.28 kcal Total: -79.94 2.72 -77.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409072515.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.168 kcal (2) G-P(sol) polarization free energy of solvation -79.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds