Wall clock time and date at job start Tue Mar 31 2020 05:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46897 * 111.00291 * 2 1 4 4 C 1.52993 * 109.47548 * 66.04214 * 3 2 1 5 5 N 1.46503 * 109.47392 * 180.02562 * 4 3 2 6 6 C 1.46494 * 119.99755 * 90.00447 * 5 4 3 7 7 C 1.34777 * 119.99719 * 270.00444 * 5 4 3 8 8 O 1.21684 * 120.00460 * 359.97438 * 7 5 4 9 9 C 1.46383 * 119.99586 * 179.97438 * 7 5 4 10 10 H 1.08006 * 119.99685 * 359.97438 * 9 7 5 11 11 C 1.40044 * 119.99823 * 179.97438 * 9 7 5 12 12 N 1.30669 * 120.00185 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 119.99785 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47355 * 89.99848 * 13 11 9 15 15 H 1.48500 * 109.47056 * 209.99989 * 13 11 9 16 16 H 1.48503 * 109.47080 * 329.99881 * 13 11 9 17 17 C 1.46900 * 111.00062 * 236.04044 * 2 1 3 18 18 C 1.52998 * 109.47094 * 293.95724 * 17 2 1 19 19 N 1.46497 * 109.47100 * 179.97438 * 18 17 2 20 20 C 1.34527 * 124.46173 * 269.97804 * 19 18 17 21 21 O 1.21445 * 125.70798 * 0.03494 * 20 19 18 22 22 C 1.47815 * 108.57968 * 180.02562 * 20 19 18 23 23 C 1.38565 * 134.29113 * 180.02562 * 22 20 19 24 24 C 1.38612 * 119.71975 * 179.97438 * 23 22 20 25 25 C 1.38234 * 120.45518 * 0.02900 * 24 23 22 26 26 C 1.38604 * 120.46148 * 359.95875 * 25 24 23 27 27 C 1.38570 * 119.72412 * 0.02562 * 26 25 24 28 28 C 1.34527 * 124.46351 * 89.99811 * 19 18 17 29 29 O 1.21449 * 125.70270 * 0.02562 * 28 19 18 30 30 H 1.08996 * 109.47704 * 183.96195 * 1 2 3 31 31 H 1.09007 * 109.46893 * 303.95618 * 1 2 3 32 32 H 1.09001 * 109.47344 * 63.95556 * 1 2 3 33 33 H 1.09002 * 109.47149 * 186.04711 * 3 2 1 34 34 H 1.09003 * 109.47076 * 306.03882 * 3 2 1 35 35 H 1.08993 * 109.47282 * 300.00618 * 4 3 2 36 36 H 1.09003 * 109.46980 * 60.00498 * 4 3 2 37 37 H 1.08996 * 109.47624 * 90.00012 * 6 5 4 38 38 H 1.09008 * 109.47189 * 210.00027 * 6 5 4 39 39 H 1.09000 * 109.47252 * 329.99719 * 6 5 4 40 40 H 0.97005 * 119.99755 * 179.97438 * 12 11 9 41 41 H 1.09004 * 109.47100 * 173.95723 * 17 2 1 42 42 H 1.08999 * 109.46831 * 53.95886 * 17 2 1 43 43 H 1.09004 * 109.47148 * 60.00028 * 18 17 2 44 44 H 1.08999 * 109.47414 * 299.99805 * 18 17 2 45 45 H 1.08008 * 120.14186 * 359.68328 * 23 22 20 46 46 H 1.08000 * 119.77048 * 179.97438 * 24 23 22 47 47 H 1.08002 * 119.76600 * 179.97438 * 25 24 23 48 48 H 1.07996 * 120.14014 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3181 5 7 2.1560 3.4254 1.3178 6 6 1.3356 4.5243 0.8028 7 6 3.3934 3.6727 1.7914 8 8 4.0747 2.7599 2.2197 9 6 3.9177 5.0394 1.7906 10 1 3.3131 5.8494 1.4101 11 6 5.2032 5.2964 2.2832 12 7 5.9344 4.3164 2.7440 13 14 5.8726 7.0404 2.2815 14 1 5.5188 7.7077 3.5600 15 1 7.3499 7.0034 2.1346 16 1 5.2812 7.7965 1.1484 17 6 1.9954 -0.7661 -1.1375 18 6 1.6313 -2.2427 -0.9702 19 7 2.1558 -3.0066 -2.1048 20 6 1.4817 -3.2331 -3.2467 21 8 0.3593 -2.8423 -3.4967 22 6 2.3357 -4.0371 -4.1463 23 6 2.1779 -4.5579 -5.4206 24 6 3.2052 -5.2891 -5.9962 25 6 4.3847 -5.5023 -5.3075 26 6 4.5567 -4.9873 -4.0323 27 6 3.5385 -4.2540 -3.4443 28 6 3.3749 -3.5742 -2.1420 29 8 4.2021 -3.5356 -1.2537 30 1 -0.3634 -1.0251 0.0710 31 1 -0.3633 0.5741 0.8525 32 1 -0.3634 0.4512 -0.9233 33 1 3.0797 1.3443 -0.1083 34 1 1.5612 1.9273 -0.8310 35 1 0.5473 2.0845 1.4264 36 1 2.0658 1.5016 2.1491 37 1 0.7428 4.9465 1.6142 38 1 1.9826 5.2963 0.3858 39 1 0.6712 4.1481 0.0250 40 1 6.8250 4.4945 3.0849 41 1 3.0797 -0.6612 -1.1755 42 1 1.5611 -0.3874 -2.0627 43 1 0.5470 -2.3475 -0.9322 44 1 2.0656 -2.6214 -0.0449 45 1 1.2565 -4.3988 -5.9613 46 1 3.0829 -5.6957 -6.9892 47 1 5.1777 -6.0741 -5.7665 48 1 5.4805 -5.1566 -3.4991 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576219363.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:23 Heat of formation + Delta-G solvation = -31.313194 kcal Electronic energy + Delta-G solvation = -31176.623851 eV Core-core repulsion = 26812.359994 eV Total energy + Delta-G solvation = -4364.263857 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.64293 -39.01878 -38.89782 -38.21510 -37.11844 -36.04534 -33.95669 -32.80601 -32.41007 -31.64101 -30.11915 -28.44818 -26.72214 -25.95371 -25.47156 -25.16082 -23.75093 -22.58065 -22.10809 -20.82237 -20.15805 -18.99034 -18.17405 -17.64251 -16.99907 -16.60919 -16.47753 -15.75132 -15.62962 -15.54459 -15.27613 -14.95466 -14.73284 -14.53843 -14.50738 -14.26558 -14.22075 -13.79128 -13.46394 -13.34820 -13.19620 -12.83476 -12.64326 -12.44893 -12.16641 -12.10062 -11.61694 -11.54252 -11.38550 -11.29094 -11.16233 -11.07201 -10.90694 -10.83216 -10.59029 -10.41021 -10.16881 -10.10042 -10.02472 -9.73370 -9.69317 -8.83548 -8.26413 -7.55952 -7.19811 -6.16671 -4.62381 -0.36744 0.46555 1.61186 1.98163 2.61876 3.11524 3.14911 3.21640 3.21694 3.24696 3.85312 3.96727 4.10997 4.14732 4.35784 4.54701 4.58928 4.65951 4.70394 4.78208 4.83180 4.91397 5.11486 5.23395 5.27926 5.30674 5.40081 5.44918 5.53425 5.58499 5.63575 5.67092 5.74682 5.81369 5.89623 5.91850 6.02339 6.06624 6.07762 6.34744 6.38600 6.52448 6.54996 6.72551 6.88490 7.12150 7.17427 7.36085 7.46615 7.65952 8.16572 8.37849 9.04431 9.44937 10.60576 10.79465 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.014093 B = 0.001936 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.263824 B =14460.034765 C =15540.214306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.533 5.533 3 C 0.047 3.953 4 C 0.134 3.866 5 N -0.650 5.650 6 C 0.103 3.897 7 C 0.555 3.445 8 O -0.572 6.572 9 C -0.544 4.544 10 H 0.072 0.928 11 C 0.087 3.913 12 N -0.766 5.766 13 Si 0.906 3.094 14 H -0.272 1.272 15 H -0.279 1.279 16 H -0.265 1.265 17 C 0.043 3.957 18 C 0.114 3.886 19 N -0.574 5.574 20 C 0.574 3.426 21 O -0.463 6.463 22 C -0.140 4.140 23 C -0.046 4.046 24 C -0.098 4.098 25 C -0.096 4.096 26 C -0.045 4.045 27 C -0.136 4.136 28 C 0.570 3.430 29 O -0.449 6.449 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.025 0.975 33 H 0.081 0.919 34 H 0.028 0.972 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.031 0.969 38 H 0.071 0.929 39 H 0.037 0.963 40 H 0.268 0.732 41 H 0.082 0.918 42 H 0.037 0.963 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.142 0.858 46 H 0.142 0.858 47 H 0.142 0.858 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.272 -19.442 -18.273 27.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.258 5.258 3 C -0.082 4.082 4 C 0.009 3.991 5 N -0.388 5.388 6 C -0.042 4.042 7 C 0.361 3.639 8 O -0.454 6.454 9 C -0.581 4.581 10 H 0.090 0.910 11 C -0.133 4.133 12 N -0.395 5.395 13 Si 0.731 3.269 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.189 1.189 17 C -0.087 4.087 18 C -0.006 4.006 19 N -0.316 5.316 20 C 0.363 3.637 21 O -0.334 6.334 22 C -0.144 4.144 23 C -0.065 4.065 24 C -0.116 4.116 25 C -0.114 4.114 26 C -0.064 4.064 27 C -0.140 4.140 28 C 0.358 3.642 29 O -0.319 6.319 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.044 0.956 33 H 0.099 0.901 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.050 0.950 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.056 0.944 43 H 0.115 0.885 44 H 0.127 0.873 45 H 0.160 0.840 46 H 0.160 0.840 47 H 0.160 0.840 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.746 -19.930 -17.061 27.355 hybrid contribution -0.064 1.416 -0.839 1.647 sum -7.809 -18.514 -17.900 26.910 Atomic orbital electron populations 1.22534 0.87708 1.01871 1.00982 1.61823 1.07605 1.15094 1.41264 1.22618 1.01062 0.85806 0.98707 1.20905 0.96624 0.84985 0.96568 1.48005 1.17941 1.04761 1.68127 1.21379 0.94741 0.91220 0.96815 1.18276 0.78190 0.90357 0.77116 1.90613 1.57096 1.46992 1.50749 1.21010 1.00601 0.92462 1.44016 0.91027 1.25741 0.96540 0.97946 0.93092 1.70025 1.08557 1.31899 1.29005 0.86401 0.78267 0.83038 0.79225 1.19732 1.20469 1.18944 1.22361 1.01463 0.92208 0.92647 1.21822 1.00624 0.91038 0.87126 1.46558 1.17033 1.50011 1.18043 1.18384 0.85320 0.78650 0.81349 1.90810 1.16937 1.49454 1.76204 1.20594 0.95561 1.01798 0.96414 1.20814 0.99611 0.93973 0.92074 1.21478 0.92751 0.96972 1.00418 1.21490 0.97936 0.98230 0.93761 1.20852 0.97773 0.93330 0.94460 1.20614 0.96365 1.01760 0.95273 1.18400 0.81029 0.77809 0.86939 1.90872 1.43722 1.55809 1.41461 0.91627 0.90599 0.95644 0.90067 0.95412 0.93061 0.90014 0.95014 0.91031 0.94380 0.92110 0.89958 0.94439 0.88465 0.87313 0.84034 0.84049 0.84002 0.83864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.13 60.06 0.55 0.76 16 2 N -0.53 -8.23 4.76 -242.93 -1.16 -9.38 16 3 C 0.05 0.86 5.28 -3.83 -0.02 0.84 16 4 C 0.13 2.69 5.34 -4.04 -0.02 2.67 16 5 N -0.65 -15.08 2.87 -183.25 -0.53 -15.61 16 6 C 0.10 1.94 10.15 59.84 0.61 2.55 16 7 C 0.55 16.03 7.61 -12.98 -0.10 15.93 16 8 O -0.57 -18.77 14.60 5.20 0.08 -18.70 16 9 C -0.54 -15.46 8.74 -35.63 -0.31 -15.77 16 10 H 0.07 1.86 5.99 -52.48 -0.31 1.54 16 11 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 12 N -0.77 -23.25 11.83 55.55 0.66 -22.59 16 13 Si 0.91 20.30 29.56 -169.99 -5.02 15.28 16 14 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 17 C 0.04 0.60 5.28 -3.82 -0.02 0.58 16 18 C 0.11 1.38 5.67 -4.04 -0.02 1.36 16 19 N -0.57 -6.86 2.62 -117.62 -0.31 -7.16 16 20 C 0.57 6.61 8.02 -12.46 -0.10 6.51 16 21 O -0.46 -6.25 17.68 5.41 0.10 -6.15 16 22 C -0.14 -1.28 6.40 -104.83 -0.67 -1.95 16 23 C -0.05 -0.29 10.09 -39.32 -0.40 -0.68 16 24 C -0.10 -0.40 10.04 -39.45 -0.40 -0.80 16 25 C -0.10 -0.41 10.04 -39.45 -0.40 -0.80 16 26 C -0.05 -0.30 10.09 -39.32 -0.40 -0.70 16 27 C -0.14 -1.29 6.41 -104.84 -0.67 -1.96 16 28 C 0.57 7.01 8.02 -12.46 -0.10 6.91 16 29 O -0.45 -6.84 17.68 5.41 0.10 -6.74 16 30 H 0.07 0.70 6.47 -51.93 -0.34 0.37 16 31 H 0.08 0.93 6.30 -51.93 -0.33 0.60 16 32 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 1.76 7.93 -51.93 -0.41 1.35 16 34 H 0.03 0.49 8.12 -51.93 -0.42 0.06 16 35 H 0.05 0.87 6.40 -51.93 -0.33 0.54 16 36 H 0.08 1.88 7.42 -51.93 -0.39 1.49 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 1.39 6.09 -51.92 -0.32 1.08 16 39 H 0.04 0.60 8.07 -51.93 -0.42 0.18 16 40 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 41 H 0.08 1.30 7.93 -51.93 -0.41 0.88 16 42 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 43 H 0.10 1.06 6.37 -51.93 -0.33 0.73 16 44 H 0.11 1.35 7.97 -51.93 -0.41 0.94 16 45 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 46 H 0.14 0.17 8.06 -52.49 -0.42 -0.25 16 47 H 0.14 0.21 8.06 -52.49 -0.42 -0.22 16 48 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 404.72 15.07 6.10 6.10 Total: -1.00 -37.65 404.72 -9.07 -46.72 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.51 Total: 0.45 kcal Atomic # 6 Polarization: 20.37 SS G_CDS: -2.56 Total: 17.80 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -1.33 Total: -54.75 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: 0.27 Total: -31.60 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.65 -9.07 -46.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576219363.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.403 kcal (2) G-P(sol) polarization free energy of solvation -37.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds