Wall clock time and date at job start Tue Mar 31 2020 05:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47018 * 2 1 4 4 H 1.08998 * 109.47430 * 303.18224 * 3 2 1 5 5 C 1.50700 * 109.47016 * 183.18674 * 3 2 1 6 6 H 1.08004 * 120.00532 * 245.43214 * 5 3 2 7 7 C 1.37877 * 120.00141 * 65.43635 * 5 3 2 8 8 N 1.31514 * 119.99862 * 7.57606 * 7 5 3 9 9 Si 1.86799 * 120.00300 * 187.58094 * 7 5 3 10 10 H 1.48497 * 109.47512 * 84.99034 * 9 7 5 11 11 H 1.48504 * 109.47027 * 204.99092 * 9 7 5 12 12 H 1.48503 * 109.46911 * 324.98617 * 9 7 5 13 13 N 1.46501 * 109.47163 * 63.19098 * 3 2 1 14 14 C 1.34778 * 119.99640 * 274.99539 * 13 3 2 15 15 O 1.21280 * 120.00243 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99901 * 179.97438 * 14 13 3 17 17 C 1.52996 * 109.46975 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.46975 * 179.97438 * 17 16 14 19 19 O 1.21293 * 119.99989 * 0.02562 * 18 17 16 20 20 N 1.34769 * 120.00079 * 180.02562 * 18 17 16 21 21 C 1.40088 * 120.00320 * 184.36347 * 20 18 17 22 22 C 1.39304 * 119.86789 * 143.77347 * 21 20 18 23 23 C 1.37818 * 120.40734 * 180.02562 * 22 21 20 24 24 C 1.38694 * 119.96830 * 0.02562 * 23 22 21 25 25 O 1.35198 * 133.84443 * 180.02562 * 24 23 22 26 26 C 1.34209 * 108.16286 * 179.97438 * 25 24 23 27 27 C 1.50698 * 124.85452 * 179.97438 * 26 25 24 28 28 N 1.29917 * 110.29292 * 359.97438 * 26 25 24 29 29 C 1.36074 * 108.80612 * 0.02562 * 28 26 25 30 30 C 1.38285 * 119.86378 * 323.51039 * 21 20 18 31 31 H 1.09002 * 109.47120 * 59.99721 * 1 2 3 32 32 H 1.08998 * 109.46875 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46848 * 299.99676 * 1 2 3 34 34 H 1.09006 * 109.46888 * 240.00487 * 2 1 3 35 35 H 1.09002 * 109.47120 * 120.00279 * 2 1 3 36 36 H 0.97001 * 120.00200 * 180.02562 * 8 7 5 37 37 H 0.96996 * 119.99835 * 94.72147 * 13 3 2 38 38 H 1.09001 * 109.47074 * 300.00660 * 16 14 13 39 39 H 1.09000 * 109.46765 * 60.00112 * 16 14 13 40 40 H 1.08995 * 109.47394 * 300.00213 * 17 16 14 41 41 H 1.08998 * 109.46763 * 60.00644 * 17 16 14 42 42 H 0.97003 * 120.00142 * 4.36457 * 20 18 17 43 43 H 1.07998 * 119.79095 * 359.97438 * 22 21 20 44 44 H 1.07998 * 120.00982 * 180.02562 * 23 22 21 45 45 H 1.08994 * 109.47290 * 270.00030 * 27 26 25 46 46 H 1.08997 * 109.47375 * 30.00179 * 27 26 25 47 47 H 1.09004 * 109.47115 * 150.00228 * 27 26 25 48 48 H 1.07999 * 120.16345 * 359.97438 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6309 1.9725 -0.8601 5 6 3.5449 1.4432 -0.0790 6 1 4.1291 1.8165 0.7492 7 6 4.1762 0.9674 -1.2086 8 7 3.4707 0.6526 -2.2729 9 14 6.0337 0.7697 -1.2274 10 1 6.3975 -0.5460 -0.6428 11 1 6.5250 0.8425 -2.6269 12 1 6.6551 1.8557 -0.4276 13 7 1.6154 2.1105 1.2328 14 6 0.3953 2.6785 1.3055 15 8 -0.3513 2.6361 0.3507 16 6 -0.0417 3.3652 2.5738 17 6 -1.4556 3.9205 2.3919 18 6 -1.8929 4.6067 3.6604 19 8 -1.1468 4.6479 4.6158 20 7 -3.1130 5.1745 3.7332 21 6 -3.4850 5.8910 4.8781 22 6 -4.2774 7.0302 4.7566 23 6 -4.6494 7.7437 5.8755 24 6 -4.2339 7.3284 7.1319 25 8 -4.4260 7.7988 8.3847 26 6 -3.7821 6.9885 9.2391 27 6 -3.7480 7.1666 10.7352 28 7 -3.1924 6.0285 8.5921 29 6 -3.4355 6.1820 7.2621 30 6 -3.0686 5.4613 6.1248 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8900 36 1 3.9147 0.3174 -3.0675 37 1 2.2109 2.1406 1.9978 38 1 -0.0350 2.6491 3.3956 39 1 0.6432 4.1828 2.7988 40 1 -1.4618 4.6367 1.5702 41 1 -2.1407 3.1032 2.1667 42 1 -3.7336 5.0872 2.9929 43 1 -4.6014 7.3567 3.7795 44 1 -5.2643 8.6257 5.7739 45 1 -2.8950 7.7879 11.0078 46 1 -4.6685 7.6484 11.0648 47 1 -3.6559 6.1922 11.2151 48 1 -2.4581 4.5752 6.2175 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585089476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:53 Heat of formation + Delta-G solvation = -44.887458 kcal Electronic energy + Delta-G solvation = -30476.072627 eV Core-core repulsion = 26111.220145 eV Total energy + Delta-G solvation = -4364.852481 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.55356 -40.67981 -39.07131 -38.07432 -35.26613 -35.14133 -34.71585 -32.81345 -32.29464 -31.85020 -30.96224 -30.17086 -28.31770 -27.18025 -25.43323 -23.42715 -22.97266 -22.74830 -21.88965 -20.80817 -20.02871 -19.30722 -18.85880 -18.04020 -17.42541 -17.17726 -16.60742 -16.48457 -16.02321 -15.49797 -15.20311 -15.05759 -14.80082 -14.39549 -14.23705 -14.02763 -13.86084 -13.75574 -13.50396 -13.27022 -13.10412 -12.88317 -12.77516 -12.62573 -12.12572 -11.96502 -11.88729 -11.68122 -11.46809 -11.34948 -11.01798 -11.00674 -10.87967 -10.76565 -10.52653 -10.34580 -10.20995 -10.00023 -9.70050 -9.09353 -8.96306 -8.80399 -8.49032 -8.48580 -7.82944 -6.14114 -4.19936 0.32305 0.78047 2.02424 2.11627 2.35949 2.64585 3.25577 3.29366 3.32328 3.33791 3.41866 3.46333 4.09425 4.18121 4.36752 4.49126 4.57773 4.62286 4.69090 4.83285 4.86591 4.99044 5.04167 5.11626 5.13970 5.19321 5.34849 5.51016 5.67409 5.76588 5.78548 5.79814 5.87747 5.92741 5.94298 6.03592 6.33873 6.38004 6.42796 6.58923 6.98267 7.02190 7.15720 7.28498 7.32034 7.43188 7.61556 7.71959 7.84756 7.85217 8.08804 8.68764 8.79760 9.14581 9.46517 10.93909 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.020604 B = 0.001558 C = 0.001505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.632422 B =17969.988572 C =18605.770838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.268 3.732 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.898 3.102 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.707 5.707 14 C 0.501 3.499 15 O -0.555 6.555 16 C -0.129 4.129 17 C -0.119 4.119 18 C 0.514 3.486 19 O -0.517 6.517 20 N -0.675 5.675 21 C 0.147 3.853 22 C -0.113 4.113 23 C -0.074 4.074 24 C -0.010 4.010 25 O -0.216 6.216 26 C 0.247 3.753 27 C -0.064 4.064 28 N -0.478 5.478 29 C 0.042 3.958 30 C -0.065 4.065 31 H 0.052 0.948 32 H 0.022 0.978 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.389 0.611 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.416 0.584 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.106 0.894 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.989 13.795 19.775 30.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.166 3.834 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.355 5.355 14 C 0.286 3.714 15 O -0.435 6.435 16 C -0.170 4.170 17 C -0.159 4.159 18 C 0.303 3.697 19 O -0.392 6.392 20 N -0.322 5.322 21 C 0.051 3.949 22 C -0.133 4.133 23 C -0.093 4.093 24 C -0.060 4.060 25 O -0.108 6.108 26 C 0.035 3.965 27 C -0.121 4.121 28 N -0.209 5.209 29 C -0.070 4.070 30 C -0.086 4.086 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.221 0.779 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.253 0.747 43 H 0.164 0.836 44 H 0.158 0.842 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.124 0.876 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -18.530 13.200 19.757 30.132 hybrid contribution 0.652 0.370 -0.383 0.841 sum -17.878 13.569 19.374 29.650 Atomic orbital electron populations 1.21840 0.98127 0.98105 1.01381 1.21854 0.92879 0.99953 1.01297 1.18785 0.93886 0.88735 0.81977 0.92660 1.21204 0.90582 1.43384 1.02330 0.92095 1.24884 0.98548 0.95120 0.94968 1.69968 1.35733 1.43213 1.02877 0.86524 0.85047 0.78662 0.77242 1.20446 1.21179 1.19920 1.46481 1.15200 1.55391 1.18381 1.20289 0.82739 0.79431 0.88932 1.90660 1.53373 1.60682 1.38764 1.21420 0.95940 1.01874 0.97744 1.21362 0.98426 1.01845 0.94261 1.21234 0.80173 0.77659 0.90598 1.90738 1.52915 1.57044 1.38474 1.43592 1.17035 1.53508 1.18057 1.17389 0.98536 0.92608 0.86357 1.20793 1.00267 0.93496 0.98731 1.19591 1.01957 1.01247 0.86554 1.20290 1.03218 0.97306 0.85166 1.84474 1.62092 1.49300 1.14928 1.26515 0.89454 0.84942 0.95545 1.20427 1.04954 1.05628 0.81118 1.70654 1.23197 1.23785 1.03220 1.19617 0.99914 0.96013 0.91462 1.20313 1.00328 1.00414 0.87555 0.92908 0.95843 0.94167 0.90112 0.94726 0.92586 0.77852 0.88780 0.88702 0.87506 0.87597 0.74691 0.83640 0.84205 0.88253 0.88861 0.87572 0.83019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.48 37.16 0.32 -2.61 16 2 C -0.12 -2.86 5.49 -26.73 -0.15 -3.00 16 3 C 0.27 6.61 2.13 -69.08 -0.15 6.46 16 4 H 0.06 1.59 7.54 -51.93 -0.39 1.20 16 5 C -0.54 -14.09 8.66 -34.44 -0.30 -14.38 16 6 H 0.06 1.54 7.73 -52.48 -0.41 1.13 16 7 C 0.07 1.84 5.21 -17.82 -0.09 1.74 16 8 N -0.88 -24.73 12.06 55.43 0.67 -24.06 16 9 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.71 -14.22 5.00 -54.93 -0.27 -14.49 16 14 C 0.50 9.21 6.32 -10.98 -0.07 9.14 16 15 O -0.55 -11.77 13.11 5.56 0.07 -11.70 16 16 C -0.13 -1.77 4.99 -27.88 -0.14 -1.91 16 17 C -0.12 -1.34 4.99 -27.88 -0.14 -1.48 16 18 C 0.51 5.86 7.66 -10.99 -0.08 5.78 16 19 O -0.52 -7.70 13.51 5.55 0.07 -7.62 16 20 N -0.68 -5.82 5.33 -9.86 -0.05 -5.88 16 21 C 0.15 1.47 6.27 -83.67 -0.52 0.94 16 22 C -0.11 -0.85 9.94 -39.34 -0.39 -1.24 16 23 C -0.07 -0.60 10.05 -39.57 -0.40 -1.00 16 24 C -0.01 -0.10 7.43 -38.64 -0.29 -0.39 16 25 O -0.22 -2.23 10.77 3.44 0.04 -2.19 16 26 C 0.25 2.35 8.23 -13.09 -0.11 2.24 16 27 C -0.06 -0.26 10.51 36.00 0.38 0.12 16 28 N -0.48 -6.07 11.34 -8.71 -0.10 -6.17 16 29 C 0.04 0.54 7.23 -84.72 -0.61 -0.07 16 30 C -0.06 -0.81 8.73 -39.07 -0.34 -1.16 16 31 H 0.05 1.20 7.74 -51.93 -0.40 0.80 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.04 0.82 5.69 -51.93 -0.30 0.52 16 34 H 0.08 2.11 6.76 -51.93 -0.35 1.76 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.39 6.93 8.53 -40.82 -0.35 6.58 16 38 H 0.09 1.23 8.10 -51.93 -0.42 0.81 16 39 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 40 H 0.11 1.15 8.10 -51.93 -0.42 0.73 16 41 H 0.11 1.12 8.10 -51.93 -0.42 0.70 16 42 H 0.42 2.16 8.83 -40.82 -0.36 1.80 16 43 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 45 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 47 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.15 2.15 6.32 -52.49 -0.33 1.82 16 LS Contribution 400.98 15.07 6.04 6.04 Total: -1.00 -35.10 400.98 -8.30 -43.40 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.66 Total: 7.90 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -3.09 Total: -0.83 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.24 Total: -50.59 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.18 Total: -21.52 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.10 -8.30 -43.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585089476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.485 kcal (2) G-P(sol) polarization free energy of solvation -35.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds