Wall clock time and date at job start Tue Mar 31 2020 05:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47018 * 2 1 4 4 H 1.08998 * 109.47430 * 303.18224 * 3 2 1 5 5 C 1.50700 * 109.47016 * 183.18674 * 3 2 1 6 6 H 1.08004 * 120.00532 * 245.43214 * 5 3 2 7 7 C 1.37877 * 120.00141 * 65.43635 * 5 3 2 8 8 N 1.31514 * 119.99862 * 7.57606 * 7 5 3 9 9 Si 1.86799 * 120.00300 * 187.58094 * 7 5 3 10 10 H 1.48497 * 109.47512 * 84.99034 * 9 7 5 11 11 H 1.48504 * 109.47027 * 204.99092 * 9 7 5 12 12 H 1.48503 * 109.46911 * 324.98617 * 9 7 5 13 13 N 1.46501 * 109.47163 * 63.19098 * 3 2 1 14 14 C 1.34778 * 119.99640 * 274.99539 * 13 3 2 15 15 O 1.21280 * 120.00243 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99901 * 179.97438 * 14 13 3 17 17 C 1.52996 * 109.46975 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.46975 * 179.97438 * 17 16 14 19 19 O 1.21293 * 119.99989 * 0.02562 * 18 17 16 20 20 N 1.34769 * 120.00079 * 180.02562 * 18 17 16 21 21 C 1.40088 * 120.00320 * 184.36347 * 20 18 17 22 22 C 1.39304 * 119.86789 * 143.77347 * 21 20 18 23 23 C 1.37818 * 120.40734 * 180.02562 * 22 21 20 24 24 C 1.38694 * 119.96830 * 0.02562 * 23 22 21 25 25 O 1.35198 * 133.84443 * 180.02562 * 24 23 22 26 26 C 1.34209 * 108.16286 * 179.97438 * 25 24 23 27 27 C 1.50698 * 124.85452 * 179.97438 * 26 25 24 28 28 N 1.29917 * 110.29292 * 359.97438 * 26 25 24 29 29 C 1.36074 * 108.80612 * 0.02562 * 28 26 25 30 30 C 1.38285 * 119.86378 * 323.51039 * 21 20 18 31 31 H 1.09002 * 109.47120 * 59.99721 * 1 2 3 32 32 H 1.08998 * 109.46875 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46848 * 299.99676 * 1 2 3 34 34 H 1.09006 * 109.46888 * 240.00487 * 2 1 3 35 35 H 1.09002 * 109.47120 * 120.00279 * 2 1 3 36 36 H 0.97001 * 120.00200 * 180.02562 * 8 7 5 37 37 H 0.96996 * 119.99835 * 94.72147 * 13 3 2 38 38 H 1.09001 * 109.47074 * 300.00660 * 16 14 13 39 39 H 1.09000 * 109.46765 * 60.00112 * 16 14 13 40 40 H 1.08995 * 109.47394 * 300.00213 * 17 16 14 41 41 H 1.08998 * 109.46763 * 60.00644 * 17 16 14 42 42 H 0.97003 * 120.00142 * 4.36457 * 20 18 17 43 43 H 1.07998 * 119.79095 * 359.97438 * 22 21 20 44 44 H 1.07998 * 120.00982 * 180.02562 * 23 22 21 45 45 H 1.08994 * 109.47290 * 270.00030 * 27 26 25 46 46 H 1.08997 * 109.47375 * 30.00179 * 27 26 25 47 47 H 1.09004 * 109.47115 * 150.00228 * 27 26 25 48 48 H 1.07999 * 120.16345 * 359.97438 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6309 1.9725 -0.8601 5 6 3.5449 1.4432 -0.0790 6 1 4.1291 1.8165 0.7492 7 6 4.1762 0.9674 -1.2086 8 7 3.4707 0.6526 -2.2729 9 14 6.0337 0.7697 -1.2274 10 1 6.3975 -0.5460 -0.6428 11 1 6.5250 0.8425 -2.6269 12 1 6.6551 1.8557 -0.4276 13 7 1.6154 2.1105 1.2328 14 6 0.3953 2.6785 1.3055 15 8 -0.3513 2.6361 0.3507 16 6 -0.0417 3.3652 2.5738 17 6 -1.4556 3.9205 2.3919 18 6 -1.8929 4.6067 3.6604 19 8 -1.1468 4.6479 4.6158 20 7 -3.1130 5.1745 3.7332 21 6 -3.4850 5.8910 4.8781 22 6 -4.2774 7.0302 4.7566 23 6 -4.6494 7.7437 5.8755 24 6 -4.2339 7.3284 7.1319 25 8 -4.4260 7.7988 8.3847 26 6 -3.7821 6.9885 9.2391 27 6 -3.7480 7.1666 10.7352 28 7 -3.1924 6.0285 8.5921 29 6 -3.4355 6.1820 7.2621 30 6 -3.0686 5.4613 6.1248 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8900 36 1 3.9147 0.3174 -3.0675 37 1 2.2109 2.1406 1.9978 38 1 -0.0350 2.6491 3.3956 39 1 0.6432 4.1828 2.7988 40 1 -1.4618 4.6367 1.5702 41 1 -2.1407 3.1032 2.1667 42 1 -3.7336 5.0872 2.9929 43 1 -4.6014 7.3567 3.7795 44 1 -5.2643 8.6257 5.7739 45 1 -2.8950 7.7879 11.0078 46 1 -4.6685 7.6484 11.0648 47 1 -3.6559 6.1922 11.2151 48 1 -2.4581 4.5752 6.2175 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585089476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:52 Heat of formation + Delta-G solvation = -71.507003 kcal Electronic energy + Delta-G solvation = -30477.226937 eV Core-core repulsion = 26111.220145 eV Total energy + Delta-G solvation = -4366.006791 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.28924 -41.58339 -40.58046 -38.92010 -36.94439 -36.04802 -35.50430 -34.26863 -33.94302 -32.66771 -32.37708 -31.00144 -29.20132 -28.78977 -26.64520 -24.89772 -24.02952 -23.66073 -22.60705 -22.09468 -21.36498 -20.95015 -19.62431 -19.08871 -18.61513 -17.98298 -17.88107 -17.32701 -17.26755 -16.98714 -16.76070 -16.12905 -15.96431 -15.76772 -15.22480 -14.91162 -14.89873 -14.65177 -14.52504 -14.17799 -14.10248 -13.99872 -13.66192 -13.50606 -13.46566 -13.29746 -13.22687 -13.05303 -12.85485 -12.80320 -12.60663 -12.41276 -12.19590 -12.13722 -12.01625 -11.67387 -11.59154 -11.32126 -11.06780 -10.93221 -10.60445 -10.48802 -9.58186 -9.54281 -9.25870 -8.18413 -6.31365 -0.37534 -0.00300 1.30796 1.44161 1.44959 1.45650 1.48573 1.54245 1.83938 1.91620 2.38418 2.53714 2.72139 2.87975 3.13284 3.44264 3.58343 3.85846 3.95794 4.03868 4.10437 4.16345 4.22385 4.24597 4.49960 4.50642 4.57268 4.60692 4.62982 4.67986 4.77304 4.83923 4.88803 4.98525 5.00718 5.08337 5.09359 5.11163 5.15429 5.27557 5.27603 5.45200 5.56767 5.64215 5.67355 5.78444 5.95483 6.10901 6.31194 6.54083 6.78040 7.03507 7.04366 7.35267 7.62884 8.89775 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.020604 B = 0.001558 C = 0.001505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.632422 B =17969.988572 C =18605.770838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.115 4.115 3 C 0.276 3.724 4 H 0.007 0.993 5 C -0.551 4.551 6 H 0.069 0.931 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.965 3.035 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.266 1.266 13 N -0.709 5.709 14 C 0.501 3.499 15 O -0.583 6.583 16 C -0.117 4.117 17 C -0.111 4.111 18 C 0.520 3.480 19 O -0.556 6.556 20 N -0.657 5.657 21 C 0.144 3.856 22 C -0.100 4.100 23 C -0.065 4.065 24 C -0.027 4.027 25 O -0.218 6.218 26 C 0.253 3.747 27 C -0.063 4.063 28 N -0.526 5.526 29 C 0.011 3.989 30 C -0.096 4.096 31 H 0.030 0.970 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.402 0.598 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.435 0.565 43 H 0.188 0.812 44 H 0.175 0.825 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.113 0.887 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.113 15.387 20.894 32.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.154 4.154 3 C 0.172 3.828 4 H 0.025 0.975 5 C -0.589 4.589 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.790 3.210 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.191 1.191 13 N -0.358 5.358 14 C 0.288 3.712 15 O -0.464 6.464 16 C -0.157 4.157 17 C -0.151 4.151 18 C 0.309 3.691 19 O -0.433 6.433 20 N -0.305 5.305 21 C 0.049 3.951 22 C -0.120 4.120 23 C -0.084 4.084 24 C -0.077 4.077 25 O -0.111 6.111 26 C 0.042 3.958 27 C -0.120 4.120 28 N -0.257 5.257 29 C -0.100 4.100 30 C -0.118 4.118 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.236 0.764 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.275 0.725 43 H 0.205 0.795 44 H 0.193 0.807 45 H 0.135 0.865 46 H 0.137 0.863 47 H 0.132 0.868 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.693 14.808 20.890 32.303 hybrid contribution 0.933 -0.074 -0.694 1.165 sum -18.760 14.734 20.196 31.256 Atomic orbital electron populations 1.21682 0.96327 0.99362 1.00717 1.21709 0.94421 0.99048 1.00205 1.18360 0.93156 0.88998 0.82257 0.97542 1.21576 0.91618 1.43100 1.02573 0.91334 1.25726 1.03067 0.94819 0.94614 1.70106 1.37570 1.44140 1.03471 0.85474 0.79547 0.78891 0.77120 1.19726 1.21254 1.19094 1.46302 1.16348 1.55743 1.17401 1.21010 0.81616 0.78540 0.90012 1.90649 1.53976 1.61491 1.40297 1.21325 0.97552 1.01830 0.95006 1.21292 0.97031 1.02367 0.94409 1.21166 0.80629 0.77385 0.89905 1.90745 1.54290 1.58618 1.39667 1.43390 1.16454 1.52435 1.18235 1.17576 0.98561 0.93397 0.85605 1.21213 0.98503 0.91831 1.00436 1.20110 1.01080 1.01883 0.85321 1.20718 1.03593 0.97118 0.86290 1.84479 1.62253 1.49446 1.14907 1.27576 0.87491 0.83596 0.97131 1.20761 1.07007 1.06720 0.77506 1.70630 1.25451 1.25869 1.03786 1.19876 1.01131 0.97268 0.91708 1.20230 1.01943 1.00533 0.89075 0.95061 0.93565 0.93214 0.93052 0.93762 0.92655 0.76406 0.87727 0.88041 0.86599 0.86518 0.72464 0.79488 0.80727 0.86480 0.86260 0.86844 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.48 71.98 0.61 -4.65 16 2 C -0.11 -5.49 5.49 30.59 0.17 -5.33 16 3 C 0.28 13.90 2.13 44.24 0.09 13.99 16 4 H 0.01 0.40 7.54 -2.39 -0.02 0.38 16 5 C -0.55 -29.15 8.66 25.60 0.22 -28.93 16 6 H 0.07 3.44 7.73 -2.91 -0.02 3.41 16 7 C 0.02 0.99 5.21 84.65 0.44 1.43 16 8 N -0.91 -52.64 12.06 21.45 0.26 -52.38 16 9 Si 0.96 42.39 29.54 68.60 2.03 44.41 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 13 N -0.71 -28.50 5.00 -446.10 -2.23 -30.73 16 14 C 0.50 18.21 6.32 87.66 0.55 18.76 16 15 O -0.58 -24.75 13.11 -3.03 -0.04 -24.79 16 16 C -0.12 -3.08 4.99 29.85 0.15 -2.93 16 17 C -0.11 -2.33 4.99 29.85 0.15 -2.18 16 18 C 0.52 11.37 7.66 87.66 0.67 12.04 16 19 O -0.56 -16.72 13.51 -3.07 -0.04 -16.76 16 20 N -0.66 -10.26 5.33 -303.49 -1.62 -11.87 16 21 C 0.14 2.73 6.27 38.09 0.24 2.97 16 22 C -0.10 -1.21 9.94 22.43 0.22 -0.99 16 23 C -0.06 -0.89 10.05 22.28 0.22 -0.67 16 24 C -0.03 -0.58 7.43 22.88 0.17 -0.41 16 25 O -0.22 -4.35 10.77 -10.62 -0.11 -4.46 16 26 C 0.25 4.76 8.23 88.39 0.73 5.49 16 27 C -0.06 -0.41 10.51 71.24 0.75 0.34 16 28 N -0.53 -14.01 11.34 -296.31 -3.36 -17.36 16 29 C 0.01 0.31 7.23 39.31 0.28 0.59 16 30 C -0.10 -2.53 8.73 22.60 0.20 -2.33 16 31 H 0.03 1.43 7.74 -2.39 -0.02 1.42 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.05 1.99 5.69 -2.39 -0.01 1.98 16 34 H 0.05 2.75 6.76 -2.38 -0.02 2.74 16 35 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 37 H 0.40 14.07 8.53 -92.71 -0.79 13.28 16 38 H 0.10 2.60 8.10 -2.39 -0.02 2.58 16 39 H 0.10 2.60 8.10 -2.39 -0.02 2.58 16 40 H 0.12 2.27 8.10 -2.39 -0.02 2.25 16 41 H 0.12 2.24 8.10 -2.39 -0.02 2.22 16 42 H 0.43 3.33 8.83 -92.71 -0.82 2.51 16 43 H 0.19 0.67 8.06 -2.91 -0.02 0.64 16 44 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 45 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 47 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 48 H 0.12 3.85 6.32 -2.91 -0.02 3.83 16 Total: -1.00 -80.85 400.98 0.17 -80.68 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: -0.59 Total: 26.08 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 5.87 Total: 7.19 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -6.95 Total: -112.35 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -0.20 Total: -46.01 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -80.85 0.17 -80.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585089476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.172 kcal (2) G-P(sol) polarization free energy of solvation -80.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds