Wall clock time and date at job start Tue Mar 31 2020 05:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47085 * 2 1 4 4 H 1.09007 * 109.46915 * 56.56526 * 3 2 1 5 5 C 1.50700 * 109.47044 * 176.56092 * 3 2 1 6 6 H 1.08005 * 119.99297 * 114.63516 * 5 3 2 7 7 C 1.37875 * 120.00522 * 294.63384 * 5 3 2 8 8 N 1.31517 * 120.00318 * 160.55356 * 7 5 3 9 9 Si 1.86799 * 119.99919 * 340.55978 * 7 5 3 10 10 H 1.48497 * 109.47434 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.47100 * 299.99912 * 9 7 5 12 12 H 1.48502 * 109.47354 * 59.99542 * 9 7 5 13 13 N 1.46501 * 109.47521 * 296.56651 * 3 2 1 14 14 C 1.34774 * 119.99927 * 84.99836 * 13 3 2 15 15 O 1.21289 * 120.00066 * 0.02562 * 14 13 3 16 16 C 1.50695 * 119.99937 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.47310 * 180.02562 * 16 14 13 18 18 C 1.50695 * 109.47310 * 179.97438 * 17 16 14 19 19 O 1.21289 * 119.99997 * 359.97438 * 18 17 16 20 20 N 1.34783 * 120.00351 * 179.97438 * 18 17 16 21 21 C 1.40083 * 120.00135 * 184.39389 * 20 18 17 22 22 C 1.39301 * 119.86220 * 141.42285 * 21 20 18 23 23 C 1.37819 * 120.40551 * 179.97438 * 22 21 20 24 24 C 1.38698 * 119.96876 * 0.02562 * 23 22 21 25 25 O 1.35200 * 133.84627 * 180.02562 * 24 23 22 26 26 C 1.34217 * 108.15890 * 179.97438 * 25 24 23 27 27 C 1.50699 * 124.84955 * 180.02562 * 26 25 24 28 28 N 1.29914 * 110.29578 * 359.97438 * 26 25 24 29 29 C 1.36073 * 108.80697 * 0.02562 * 28 26 25 30 30 C 1.38285 * 119.86386 * 321.14818 * 21 20 18 31 31 H 1.09008 * 109.47115 * 299.99653 * 1 2 3 32 32 H 1.08994 * 109.47692 * 59.99167 * 1 2 3 33 33 H 1.08998 * 109.47019 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.46554 * 240.00520 * 2 1 3 35 35 H 1.08993 * 109.47482 * 120.00322 * 2 1 3 36 36 H 0.96998 * 119.99198 * 354.93295 * 8 7 5 37 37 H 0.97001 * 119.99678 * 264.99635 * 13 3 2 38 38 H 1.09003 * 109.47416 * 300.00063 * 16 14 13 39 39 H 1.08997 * 109.47128 * 59.99976 * 16 14 13 40 40 H 1.09010 * 109.47062 * 299.99989 * 17 16 14 41 41 H 1.08997 * 109.47196 * 59.99832 * 17 16 14 42 42 H 0.97001 * 119.99273 * 4.39207 * 20 18 17 43 43 H 1.07993 * 119.79974 * 359.97383 * 22 21 20 44 44 H 1.07993 * 120.01654 * 180.02562 * 23 22 21 45 45 H 1.09001 * 109.46569 * 269.99510 * 27 26 25 46 46 H 1.08992 * 109.47288 * 29.99371 * 27 26 25 47 47 H 1.09000 * 109.46864 * 150.00203 * 27 26 25 48 48 H 1.07999 * 120.16809 * 359.97438 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6272 1.9738 0.8577 5 6 3.5446 1.4433 0.0852 6 1 4.1319 1.8165 -0.7408 7 6 4.1713 0.9679 1.2175 8 7 5.4352 0.6079 1.1676 9 14 3.2251 0.8348 2.8226 10 1 4.1184 0.2990 3.8810 11 1 2.7352 2.1788 3.2213 12 1 2.0691 -0.0797 2.6415 13 7 1.6204 2.1089 -1.2354 14 6 0.4006 2.6767 -1.3139 15 8 -0.3495 2.6363 -0.3617 16 6 -0.0312 3.3617 -2.5848 17 6 -1.4460 3.9172 -2.4095 18 6 -1.8775 4.6027 -3.6802 19 8 -1.1272 4.6434 -4.6323 20 7 -3.0974 5.1707 -3.7588 21 6 -3.5345 5.7268 -4.9679 22 6 -4.8639 5.5815 -5.3577 23 6 -5.3061 6.1246 -6.5447 24 6 -4.4249 6.8202 -7.3592 25 8 -4.5483 7.4517 -8.5482 26 6 -3.3514 7.9623 -8.8769 27 6 -3.0641 8.7440 -10.1329 28 7 -2.4761 7.6871 -7.9571 29 6 -3.0843 6.9704 -6.9732 30 6 -2.6458 6.4226 -5.7669 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8932 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 5.9060 0.6070 0.3195 37 1 2.2205 2.1415 -1.9967 38 1 0.6546 4.1790 -2.8082 39 1 -0.0212 2.6445 -3.4055 40 1 -2.1321 3.1001 -2.1859 41 1 -1.4555 4.6345 -1.5888 42 1 -3.6725 5.1943 -2.9780 43 1 -5.5523 5.0401 -4.7259 44 1 -6.3382 6.0085 -6.8406 45 1 -2.7569 8.0601 -10.9241 46 1 -3.9627 9.2774 -10.4423 47 1 -2.2647 9.4596 -9.9405 48 1 -1.6166 6.5383 -5.4607 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585089477.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:58 Heat of formation + Delta-G solvation = -43.785463 kcal Electronic energy + Delta-G solvation = -30560.363073 eV Core-core repulsion = 26195.558378 eV Total energy + Delta-G solvation = -4364.804695 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.58649 -40.72021 -39.25413 -38.13667 -35.37763 -35.29002 -34.75745 -32.92260 -32.40840 -31.88421 -31.33528 -30.23706 -28.36219 -27.40800 -25.50309 -23.37566 -22.95483 -22.32321 -21.92310 -20.94201 -20.16978 -19.50075 -18.89935 -18.12925 -17.76326 -17.24218 -17.11963 -16.59442 -16.09216 -15.83699 -15.36375 -15.05510 -14.89426 -14.46496 -14.19761 -14.01251 -13.77546 -13.69686 -13.49900 -13.28867 -13.21729 -13.09886 -12.81644 -12.52996 -12.40323 -12.20545 -12.13245 -11.93376 -11.73284 -11.68657 -11.13925 -10.91339 -10.87588 -10.70118 -10.54084 -10.45526 -10.09058 -9.89181 -9.65337 -9.19674 -9.04276 -8.83991 -8.54769 -8.36606 -8.08203 -6.58369 -4.21705 0.28800 0.73787 1.99205 2.08359 2.30665 2.59633 3.23836 3.24994 3.38693 3.43093 3.44090 3.59606 3.98021 4.14181 4.42607 4.44127 4.50258 4.58524 4.64881 4.80325 4.83919 4.93471 4.97578 5.04535 5.09148 5.12872 5.31050 5.39301 5.63216 5.66142 5.73540 5.75140 5.82236 5.84065 5.90143 5.94782 6.05594 6.07913 6.26202 6.38398 6.67663 6.77306 6.94789 6.97078 7.03207 7.25244 7.35688 7.40973 7.66263 7.79953 8.24339 8.47692 8.70171 8.97647 9.45806 10.80302 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.023365 B = 0.001600 C = 0.001532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.108810 B =17498.460769 C =18272.458999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.138 4.138 3 C 0.247 3.753 4 H 0.041 0.959 5 C -0.620 4.620 6 H 0.062 0.938 7 C 0.043 3.957 8 N -0.895 5.895 9 Si 1.035 2.965 10 H -0.284 1.284 11 H -0.281 1.281 12 H -0.271 1.271 13 N -0.700 5.700 14 C 0.502 3.498 15 O -0.557 6.557 16 C -0.129 4.129 17 C -0.119 4.119 18 C 0.514 3.486 19 O -0.517 6.517 20 N -0.676 5.676 21 C 0.146 3.854 22 C -0.111 4.111 23 C -0.075 4.075 24 C -0.008 4.008 25 O -0.216 6.216 26 C 0.248 3.752 27 C -0.064 4.064 28 N -0.478 5.478 29 C 0.041 3.959 30 C -0.062 4.062 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.029 0.971 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.270 0.730 37 H 0.394 0.606 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.416 0.584 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.106 0.894 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.923 13.561 -18.439 33.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.177 4.177 3 C 0.144 3.856 4 H 0.059 0.941 5 C -0.658 4.658 6 H 0.080 0.920 7 C -0.164 4.164 8 N -0.527 5.527 9 Si 0.862 3.138 10 H -0.209 1.209 11 H -0.207 1.207 12 H -0.197 1.197 13 N -0.347 5.347 14 C 0.287 3.713 15 O -0.437 6.437 16 C -0.169 4.169 17 C -0.159 4.159 18 C 0.303 3.697 19 O -0.391 6.391 20 N -0.323 5.323 21 C 0.050 3.950 22 C -0.131 4.131 23 C -0.094 4.094 24 C -0.058 4.058 25 O -0.108 6.108 26 C 0.036 3.964 27 C -0.121 4.121 28 N -0.208 5.208 29 C -0.071 4.071 30 C -0.083 4.083 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.227 0.773 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.253 0.747 43 H 0.164 0.836 44 H 0.158 0.842 45 H 0.118 0.882 46 H 0.112 0.888 47 H 0.125 0.875 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -23.030 13.275 -16.780 31.436 hybrid contribution -0.774 0.163 -1.725 1.897 sum -23.804 13.439 -18.505 33.010 Atomic orbital electron populations 1.21874 0.97423 0.98797 1.01841 1.22325 0.93785 0.99862 1.01695 1.19033 0.95355 0.88299 0.82932 0.94087 1.22082 0.89649 1.48252 1.05825 0.91973 1.25649 0.96457 0.92142 1.02188 1.70859 1.11007 1.40966 1.29860 0.84192 0.75743 0.77645 0.76190 1.20934 1.20685 1.19658 1.46253 1.15123 1.55270 1.18100 1.20369 0.82582 0.79250 0.89083 1.90651 1.53209 1.60776 1.39077 1.21406 0.96097 1.01973 0.97463 1.21359 0.98309 1.01882 0.94348 1.21198 0.80443 0.77465 0.90582 1.90752 1.51721 1.57779 1.38883 1.43577 1.18942 1.58290 1.11514 1.17361 0.92842 0.96164 0.88614 1.20805 0.94930 1.01125 0.96286 1.19600 0.98913 0.98263 0.92621 1.20295 0.97005 1.01516 0.87014 1.84481 1.35386 1.57782 1.33121 1.26527 0.77696 0.94582 0.97579 1.20434 1.04411 0.98783 0.88519 1.70657 1.31524 1.16595 1.02070 1.19612 0.90435 1.00698 0.96310 1.20264 1.01436 0.95025 0.91566 0.92900 0.93461 0.95165 0.93097 0.91552 0.92000 0.77311 0.88521 0.88650 0.87564 0.87517 0.74708 0.83646 0.84181 0.88232 0.88837 0.87549 0.83272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.49 37.16 0.32 -2.47 16 2 C -0.14 -3.04 5.32 -26.73 -0.14 -3.18 16 3 C 0.25 5.80 1.84 -69.08 -0.13 5.67 16 4 H 0.04 1.05 6.21 -51.92 -0.32 0.72 16 5 C -0.62 -16.66 8.99 -34.44 -0.31 -16.97 16 6 H 0.06 1.75 7.96 -52.48 -0.42 1.34 16 7 C 0.04 1.19 5.29 -17.82 -0.09 1.10 16 8 N -0.89 -26.52 13.70 55.43 0.76 -25.76 16 9 Si 1.03 24.84 26.36 -169.99 -4.48 20.36 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.07 5.79 56.52 0.33 -5.74 16 13 N -0.70 -13.73 5.00 -54.93 -0.27 -14.01 16 14 C 0.50 8.82 6.33 -10.99 -0.07 8.75 16 15 O -0.56 -11.10 13.12 5.55 0.07 -11.02 16 16 C -0.13 -1.70 4.99 -27.88 -0.14 -1.84 16 17 C -0.12 -1.27 4.99 -27.88 -0.14 -1.41 16 18 C 0.51 5.67 7.65 -10.98 -0.08 5.58 16 19 O -0.52 -7.57 13.66 5.55 0.08 -7.50 16 20 N -0.68 -5.59 5.33 -9.86 -0.05 -5.64 16 21 C 0.15 1.41 6.23 -83.67 -0.52 0.89 16 22 C -0.11 -0.81 9.94 -39.34 -0.39 -1.20 16 23 C -0.07 -0.59 10.05 -39.56 -0.40 -0.99 16 24 C -0.01 -0.09 7.43 -38.63 -0.29 -0.37 16 25 O -0.22 -2.19 10.78 3.41 0.04 -2.15 16 26 C 0.25 2.32 8.23 -13.09 -0.11 2.21 16 27 C -0.06 -0.25 10.51 36.01 0.38 0.13 16 28 N -0.48 -6.00 11.34 -8.71 -0.10 -6.10 16 29 C 0.04 0.52 7.23 -84.71 -0.61 -0.09 16 30 C -0.06 -0.76 8.71 -39.07 -0.34 -1.10 16 31 H 0.05 1.08 7.75 -51.92 -0.40 0.67 16 32 H 0.05 0.89 5.68 -51.93 -0.30 0.60 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.53 4.99 -51.93 -0.26 1.27 16 36 H 0.27 7.93 8.73 -40.82 -0.36 7.58 16 37 H 0.39 7.05 8.53 -40.82 -0.35 6.70 16 38 H 0.10 1.25 8.10 -51.93 -0.42 0.83 16 39 H 0.10 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.11 1.05 8.10 -51.92 -0.42 0.63 16 41 H 0.11 1.07 8.10 -51.93 -0.42 0.65 16 42 H 0.42 1.99 8.83 -40.82 -0.36 1.63 16 43 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 44 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.15 2.08 6.51 -52.49 -0.34 1.73 16 LS Contribution 395.92 15.07 5.97 5.97 Total: -1.00 -35.93 395.92 -7.68 -43.61 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.62 Total: 7.52 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -3.07 Total: -5.28 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.33 Total: -51.51 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: 0.19 Total: -20.67 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -4.48 Total: 20.36 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.93 -7.68 -43.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585089477.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.173 kcal (2) G-P(sol) polarization free energy of solvation -35.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds