Wall clock time and date at job start Tue Mar 31 2020 05:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47085 * 2 1 4 4 H 1.09007 * 109.46915 * 56.56526 * 3 2 1 5 5 C 1.50700 * 109.47044 * 176.56092 * 3 2 1 6 6 H 1.08005 * 119.99297 * 114.63516 * 5 3 2 7 7 C 1.37875 * 120.00522 * 294.63384 * 5 3 2 8 8 N 1.31517 * 120.00318 * 160.55356 * 7 5 3 9 9 Si 1.86799 * 119.99919 * 340.55978 * 7 5 3 10 10 H 1.48497 * 109.47434 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.47100 * 299.99912 * 9 7 5 12 12 H 1.48502 * 109.47354 * 59.99542 * 9 7 5 13 13 N 1.46501 * 109.47521 * 296.56651 * 3 2 1 14 14 C 1.34774 * 119.99927 * 84.99836 * 13 3 2 15 15 O 1.21289 * 120.00066 * 0.02562 * 14 13 3 16 16 C 1.50695 * 119.99937 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.47310 * 180.02562 * 16 14 13 18 18 C 1.50695 * 109.47310 * 179.97438 * 17 16 14 19 19 O 1.21289 * 119.99997 * 359.97438 * 18 17 16 20 20 N 1.34783 * 120.00351 * 179.97438 * 18 17 16 21 21 C 1.40083 * 120.00135 * 184.39389 * 20 18 17 22 22 C 1.39301 * 119.86220 * 141.42285 * 21 20 18 23 23 C 1.37819 * 120.40551 * 179.97438 * 22 21 20 24 24 C 1.38698 * 119.96876 * 0.02562 * 23 22 21 25 25 O 1.35200 * 133.84627 * 180.02562 * 24 23 22 26 26 C 1.34217 * 108.15890 * 179.97438 * 25 24 23 27 27 C 1.50699 * 124.84955 * 180.02562 * 26 25 24 28 28 N 1.29914 * 110.29578 * 359.97438 * 26 25 24 29 29 C 1.36073 * 108.80697 * 0.02562 * 28 26 25 30 30 C 1.38285 * 119.86386 * 321.14818 * 21 20 18 31 31 H 1.09008 * 109.47115 * 299.99653 * 1 2 3 32 32 H 1.08994 * 109.47692 * 59.99167 * 1 2 3 33 33 H 1.08998 * 109.47019 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.46554 * 240.00520 * 2 1 3 35 35 H 1.08993 * 109.47482 * 120.00322 * 2 1 3 36 36 H 0.96998 * 119.99198 * 354.93295 * 8 7 5 37 37 H 0.97001 * 119.99678 * 264.99635 * 13 3 2 38 38 H 1.09003 * 109.47416 * 300.00063 * 16 14 13 39 39 H 1.08997 * 109.47128 * 59.99976 * 16 14 13 40 40 H 1.09010 * 109.47062 * 299.99989 * 17 16 14 41 41 H 1.08997 * 109.47196 * 59.99832 * 17 16 14 42 42 H 0.97001 * 119.99273 * 4.39207 * 20 18 17 43 43 H 1.07993 * 119.79974 * 359.97383 * 22 21 20 44 44 H 1.07993 * 120.01654 * 180.02562 * 23 22 21 45 45 H 1.09001 * 109.46569 * 269.99510 * 27 26 25 46 46 H 1.08992 * 109.47288 * 29.99371 * 27 26 25 47 47 H 1.09000 * 109.46864 * 150.00203 * 27 26 25 48 48 H 1.07999 * 120.16809 * 359.97438 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6272 1.9738 0.8577 5 6 3.5446 1.4433 0.0852 6 1 4.1319 1.8165 -0.7408 7 6 4.1713 0.9679 1.2175 8 7 5.4352 0.6079 1.1676 9 14 3.2251 0.8348 2.8226 10 1 4.1184 0.2990 3.8810 11 1 2.7352 2.1788 3.2213 12 1 2.0691 -0.0797 2.6415 13 7 1.6204 2.1089 -1.2354 14 6 0.4006 2.6767 -1.3139 15 8 -0.3495 2.6363 -0.3617 16 6 -0.0312 3.3617 -2.5848 17 6 -1.4460 3.9172 -2.4095 18 6 -1.8775 4.6027 -3.6802 19 8 -1.1272 4.6434 -4.6323 20 7 -3.0974 5.1707 -3.7588 21 6 -3.5345 5.7268 -4.9679 22 6 -4.8639 5.5815 -5.3577 23 6 -5.3061 6.1246 -6.5447 24 6 -4.4249 6.8202 -7.3592 25 8 -4.5483 7.4517 -8.5482 26 6 -3.3514 7.9623 -8.8769 27 6 -3.0641 8.7440 -10.1329 28 7 -2.4761 7.6871 -7.9571 29 6 -3.0843 6.9704 -6.9732 30 6 -2.6458 6.4226 -5.7669 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8932 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 5.9060 0.6070 0.3195 37 1 2.2205 2.1415 -1.9967 38 1 0.6546 4.1790 -2.8082 39 1 -0.0212 2.6445 -3.4055 40 1 -2.1321 3.1001 -2.1859 41 1 -1.4555 4.6345 -1.5888 42 1 -3.6725 5.1943 -2.9780 43 1 -5.5523 5.0401 -4.7259 44 1 -6.3382 6.0085 -6.8406 45 1 -2.7569 8.0601 -10.9241 46 1 -3.9627 9.2774 -10.4423 47 1 -2.2647 9.4596 -9.9405 48 1 -1.6166 6.5383 -5.4607 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585089477.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:57 Heat of formation + Delta-G solvation = -72.071229 kcal Electronic energy + Delta-G solvation = -30561.589636 eV Core-core repulsion = 26195.558378 eV Total energy + Delta-G solvation = -4366.031258 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -44.30595 -41.59714 -40.69064 -38.94839 -37.10083 -36.06428 -35.52011 -34.45172 -34.04368 -32.89389 -32.39725 -31.02810 -29.33330 -28.85740 -26.63162 -24.38462 -23.99009 -23.67490 -22.62668 -22.21461 -21.38699 -21.08458 -19.79371 -19.60427 -18.84455 -18.20893 -17.93768 -17.44970 -17.21250 -17.10426 -16.78837 -16.14548 -15.83662 -15.55659 -15.24362 -15.02584 -14.83031 -14.77188 -14.57349 -14.39622 -14.20015 -14.10020 -13.95887 -13.71321 -13.60882 -13.49488 -13.33198 -13.01321 -12.82799 -12.65280 -12.46312 -12.42180 -12.29724 -12.12403 -11.76741 -11.68591 -11.42336 -11.31727 -11.10196 -10.98015 -10.66809 -10.50631 -9.75271 -9.56074 -9.29464 -8.79525 -6.43252 -0.39259 -0.02203 1.29374 1.43950 1.46608 1.46898 1.50375 1.70353 1.81342 1.82275 2.43857 2.51536 2.58469 2.84649 2.98074 3.42108 3.54068 3.83563 3.94196 4.00947 4.08162 4.11836 4.14830 4.22667 4.34730 4.43362 4.47903 4.57724 4.59187 4.61522 4.66444 4.82260 4.84999 4.89088 4.95716 4.98307 5.06678 5.09339 5.13251 5.14569 5.24828 5.25810 5.33788 5.57277 5.65821 5.69697 5.71917 6.01781 6.29923 6.52370 6.53075 6.88610 7.03339 7.28959 7.47425 8.57835 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.023365 B = 0.001600 C = 0.001532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.108810 B =17498.460769 C =18272.458999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.136 4.136 3 C 0.252 3.748 4 H 0.026 0.974 5 C -0.619 4.619 6 H 0.036 0.964 7 C -0.003 4.003 8 N -0.926 5.926 9 Si 1.069 2.931 10 H -0.284 1.284 11 H -0.273 1.273 12 H -0.244 1.244 13 N -0.708 5.708 14 C 0.505 3.495 15 O -0.575 6.575 16 C -0.119 4.119 17 C -0.110 4.110 18 C 0.518 3.482 19 O -0.559 6.559 20 N -0.658 5.658 21 C 0.144 3.856 22 C -0.098 4.098 23 C -0.065 4.065 24 C -0.025 4.025 25 O -0.218 6.218 26 C 0.253 3.747 27 C -0.063 4.063 28 N -0.527 5.527 29 C 0.010 3.990 30 C -0.094 4.094 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.258 0.742 37 H 0.401 0.599 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.435 0.565 43 H 0.189 0.811 44 H 0.176 0.824 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.113 0.887 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.053 13.477 -18.757 36.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.175 4.175 3 C 0.147 3.853 4 H 0.044 0.956 5 C -0.657 4.657 6 H 0.054 0.946 7 C -0.204 4.204 8 N -0.560 5.560 9 Si 0.891 3.109 10 H -0.210 1.210 11 H -0.198 1.198 12 H -0.169 1.169 13 N -0.356 5.356 14 C 0.292 3.708 15 O -0.456 6.456 16 C -0.159 4.159 17 C -0.150 4.150 18 C 0.308 3.692 19 O -0.436 6.436 20 N -0.306 5.306 21 C 0.048 3.952 22 C -0.118 4.118 23 C -0.084 4.084 24 C -0.076 4.076 25 O -0.111 6.111 26 C 0.042 3.958 27 C -0.120 4.120 28 N -0.258 5.258 29 C -0.101 4.101 30 C -0.116 4.116 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.234 0.766 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.276 0.724 43 H 0.206 0.794 44 H 0.193 0.807 45 H 0.135 0.865 46 H 0.138 0.862 47 H 0.131 0.869 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -27.213 13.212 -17.106 34.753 hybrid contribution 0.511 0.271 -1.740 1.833 sum -26.702 13.484 -18.846 35.355 Atomic orbital electron populations 1.21756 0.95074 1.00382 1.01665 1.22219 0.95810 0.98320 1.01114 1.18729 0.92844 0.89569 0.84157 0.95610 1.22289 0.91775 1.46867 1.04740 0.94555 1.26843 0.96517 0.91712 1.05330 1.70962 1.12217 1.43647 1.29217 0.83758 0.75620 0.78621 0.72922 1.20991 1.19817 1.16868 1.46159 1.16363 1.55907 1.17166 1.20966 0.81371 0.78309 0.90127 1.90638 1.53513 1.61275 1.40208 1.21327 0.97769 1.01801 0.95025 1.21299 0.96841 1.02528 0.94312 1.21212 0.80783 0.77227 0.89988 1.90759 1.53085 1.59480 1.40279 1.43380 1.18317 1.56945 1.11956 1.17552 0.93607 0.95487 0.88513 1.21235 0.94060 1.00159 0.96298 1.20130 1.00018 0.96367 0.91914 1.20731 0.96827 1.02428 0.87582 1.84485 1.35691 1.57884 1.32991 1.27572 0.76963 0.93238 0.97988 1.20763 1.05921 0.98820 0.86506 1.70632 1.33194 1.18552 1.03448 1.19879 0.91846 1.01641 0.96751 1.20187 1.00860 0.97651 0.92874 0.93665 0.92982 0.92705 0.93177 0.92689 0.93292 0.76556 0.88366 0.87794 0.85958 0.86513 0.72405 0.79366 0.80665 0.86477 0.86221 0.86888 0.86205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 8.49 71.98 0.61 -4.19 16 2 C -0.14 -5.80 5.32 30.59 0.16 -5.64 16 3 C 0.25 11.70 1.84 44.24 0.08 11.78 16 4 H 0.03 1.30 6.21 -2.38 -0.01 1.28 16 5 C -0.62 -33.81 8.99 25.60 0.23 -33.58 16 6 H 0.04 2.12 7.96 -2.91 -0.02 2.10 16 7 C 0.00 -0.17 5.29 84.65 0.45 0.28 16 8 N -0.93 -56.26 13.70 21.45 0.29 -55.97 16 9 Si 1.07 49.82 26.36 68.60 1.81 51.63 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 H -0.24 -10.30 5.79 99.48 0.58 -9.72 16 13 N -0.71 -27.37 5.00 -446.09 -2.23 -29.60 16 14 C 0.50 17.01 6.33 87.66 0.55 17.56 16 15 O -0.58 -21.76 13.12 -3.06 -0.04 -21.80 16 16 C -0.12 -2.98 4.99 29.85 0.15 -2.83 16 17 C -0.11 -2.10 4.99 29.85 0.15 -1.95 16 18 C 0.52 10.80 7.65 87.65 0.67 11.47 16 19 O -0.56 -16.57 13.66 -3.06 -0.04 -16.62 16 20 N -0.66 -9.56 5.33 -303.49 -1.62 -11.18 16 21 C 0.14 2.62 6.23 38.09 0.24 2.85 16 22 C -0.10 -1.10 9.94 22.43 0.22 -0.88 16 23 C -0.07 -0.85 10.05 22.28 0.22 -0.63 16 24 C -0.03 -0.53 7.43 22.89 0.17 -0.36 16 25 O -0.22 -4.27 10.78 -10.73 -0.12 -4.39 16 26 C 0.25 4.73 8.23 88.39 0.73 5.46 16 27 C -0.06 -0.41 10.51 71.24 0.75 0.34 16 28 N -0.53 -13.98 11.34 -296.29 -3.36 -17.34 16 29 C 0.01 0.27 7.23 39.31 0.28 0.55 16 30 C -0.09 -2.44 8.71 22.60 0.20 -2.24 16 31 H 0.04 1.71 7.75 -2.38 -0.02 1.70 16 32 H 0.05 1.83 5.68 -2.39 -0.01 1.82 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.05 2.45 4.99 -2.39 -0.01 2.44 16 36 H 0.26 15.76 8.73 -92.71 -0.81 14.95 16 37 H 0.40 14.36 8.53 -92.71 -0.79 13.57 16 38 H 0.10 2.48 8.10 -2.39 -0.02 2.46 16 39 H 0.10 2.48 8.10 -2.39 -0.02 2.46 16 40 H 0.12 2.00 8.10 -2.38 -0.02 1.98 16 41 H 0.12 2.05 8.10 -2.39 -0.02 2.03 16 42 H 0.44 2.76 8.83 -92.71 -0.82 1.94 16 43 H 0.19 0.47 8.06 -2.91 -0.02 0.45 16 44 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 45 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 47 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.12 3.71 6.51 -2.91 -0.02 3.69 16 Total: -1.00 -82.12 395.92 -0.19 -82.31 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: -0.75 Total: 24.96 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 5.87 Total: -2.00 kcal Atomic # 7 Polarization: -107.17 SS G_CDS: -6.92 Total: -114.09 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -0.20 Total: -42.81 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 1.81 Total: 51.63 kcal Total: -82.12 -0.19 -82.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585089477.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.237 kcal (2) G-P(sol) polarization free energy of solvation -82.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds