Wall clock time and date at job start Tue Mar 31 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.74823 * 2 1 4 4 C 1.53375 * 109.61122 * 239.57618 * 2 1 3 5 5 N 1.46960 * 108.63704 * 190.83312 * 4 2 1 6 6 C 1.34776 * 120.59123 * 235.20221 * 5 4 2 7 7 O 1.21584 * 120.00457 * 4.74074 * 6 5 4 8 8 C 1.47582 * 119.99835 * 184.73405 * 6 5 4 9 9 C 1.39757 * 120.12292 * 31.08244 * 8 6 5 10 10 C 1.37937 * 119.91449 * 179.69634 * 9 8 6 11 11 F 1.35106 * 119.91312 * 180.29049 * 10 9 8 12 12 C 1.38895 * 120.16991 * 0.59372 * 10 9 8 13 13 F 1.35104 * 119.87560 * 179.69642 * 12 10 9 14 14 C 1.38613 * 120.24570 * 359.67812 * 12 10 9 15 15 F 1.35097 * 119.95582 * 180.02562 * 14 12 10 16 16 C 1.38400 * 120.08516 * 0.02562 * 14 12 10 17 17 F 1.35098 * 120.08628 * 179.97438 * 16 14 12 18 18 C 1.46960 * 118.81452 * 55.22646 * 5 4 2 19 19 C 1.53813 * 108.57799 * 304.64890 * 18 5 4 20 20 H 1.09007 * 109.75358 * 289.94463 * 19 18 5 21 21 C 1.52997 * 109.69542 * 169.29317 * 19 18 5 22 22 N 1.46960 * 109.61147 * 120.43238 * 2 1 3 23 23 C 1.36937 * 120.59690 * 354.94730 * 22 2 1 24 24 H 1.07989 * 120.00275 * 119.66912 * 23 22 2 25 25 C 1.38815 * 119.99329 * 299.67123 * 23 22 2 26 26 N 1.31619 * 120.00348 * 330.70373 * 25 23 22 27 27 Si 1.86800 * 119.99513 * 150.70453 * 25 23 22 28 28 H 1.48507 * 109.46995 * 179.97438 * 27 25 23 29 29 H 1.48501 * 109.47573 * 299.99477 * 27 25 23 30 30 H 1.48503 * 109.47303 * 59.99895 * 27 25 23 31 31 H 1.08999 * 109.46655 * 306.81393 * 1 2 3 32 32 H 1.08998 * 109.47070 * 66.81461 * 1 2 3 33 33 H 1.09005 * 109.47091 * 186.81439 * 1 2 3 34 34 H 1.09000 * 109.60794 * 310.57964 * 4 2 1 35 35 H 1.09003 * 109.60815 * 70.91161 * 4 2 1 36 36 H 1.08001 * 120.03916 * 359.97438 * 9 8 6 37 37 H 1.08998 * 109.60961 * 64.51856 * 18 5 4 38 38 H 1.08996 * 109.60881 * 184.85788 * 18 5 4 39 39 H 1.09005 * 109.46923 * 304.38614 * 21 19 18 40 40 H 1.09000 * 109.47415 * 64.39157 * 21 19 18 41 41 H 1.09002 * 109.47293 * 184.39572 * 21 19 18 42 42 H 0.97001 * 120.00094 * 175.05985 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0448 -0.7316 -1.2458 5 7 3.4908 -0.9489 -1.0989 6 6 4.3491 -0.5133 -2.0423 7 8 3.9393 0.1400 -2.9822 8 6 5.7867 -0.8291 -1.9343 9 6 6.1999 -2.0184 -1.3276 10 6 7.5444 -2.3122 -1.2345 11 9 7.9435 -3.4647 -0.6533 12 6 8.4891 -1.4234 -1.7312 13 9 9.8047 -1.7144 -1.6314 14 6 8.0872 -0.2393 -2.3292 15 9 9.0111 0.6207 -2.8108 16 6 6.7407 0.0631 -2.4336 17 9 6.3490 1.2175 -3.0159 18 6 3.9840 -1.6501 0.0947 19 6 3.4698 -0.9135 1.3432 20 1 3.9731 0.0488 1.4367 21 6 3.7384 -1.7605 2.5887 22 7 2.0232 -0.7012 1.1936 23 6 1.1512 -1.1439 2.1521 24 1 1.0947 -2.1966 2.3860 25 6 0.3397 -0.2392 2.8230 26 7 0.7449 0.9999 3.0040 27 14 -1.3273 -0.7806 3.4690 28 1 -1.9926 0.3636 4.1426 29 1 -2.1690 -1.2470 2.3379 30 1 -1.1457 -1.8889 4.4406 31 1 -0.3632 0.6158 0.8228 32 1 -0.3633 0.4046 -0.9447 33 1 -0.3633 -1.0205 0.1219 34 1 1.5384 -1.6921 -1.3414 35 1 1.8512 -0.1264 -2.1315 36 1 5.4672 -2.7086 -0.9361 37 1 3.6158 -2.6760 0.0946 38 1 5.0740 -1.6527 0.0931 39 1 3.2889 -2.7454 2.4623 40 1 4.8139 -1.8673 2.7305 41 1 3.3038 -1.2722 3.4609 42 1 0.1500 1.6505 3.4086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585126638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:21 Heat of formation + Delta-G solvation = -130.500397 kcal Electronic energy + Delta-G solvation = -33732.666480 eV Core-core repulsion = 28601.065835 eV Total energy + Delta-G solvation = -5131.600644 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.120 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.29764 -49.84315 -49.24232 -48.75219 -40.59547 -38.47260 -37.40296 -34.52874 -33.01872 -31.97475 -31.03083 -30.67144 -27.89020 -26.47018 -26.24140 -24.83918 -23.75160 -23.38345 -20.71692 -20.45709 -19.55208 -18.98133 -18.71804 -18.22667 -17.49671 -17.01328 -16.69570 -16.41852 -16.19801 -16.14218 -15.65465 -15.41029 -15.23296 -15.16832 -14.96035 -14.83757 -14.77277 -14.56081 -14.17339 -13.84610 -13.51981 -13.13757 -12.79089 -12.69669 -12.43326 -12.19368 -12.01012 -11.65797 -11.61739 -11.42048 -10.99104 -10.96998 -10.66347 -10.62152 -10.41599 -10.22298 -10.07631 -10.02683 -9.76974 -9.42657 -9.22809 -8.56043 -8.20488 -6.55000 -5.79673 -3.77290 -0.21359 0.06781 2.08624 2.53173 2.84593 3.09152 3.25386 3.29086 3.33789 3.36974 3.58243 3.76624 3.85723 3.91900 4.33961 4.55607 4.80493 4.94585 5.01315 5.04533 5.09172 5.26580 5.45505 5.49353 5.72012 5.82859 5.93673 5.96308 6.11160 6.16479 6.26887 6.36310 6.39776 6.54543 6.68977 6.74725 6.97001 7.16078 7.20172 7.35235 7.54025 7.73733 8.12106 8.54202 9.04460 9.54615 10.37847 10.96403 Molecular weight = 360.12amu Principal moments of inertia in cm(-1) A = 0.016683 B = 0.003113 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.989903 B = 8993.249024 C = 9866.664363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.174 3.826 3 H 0.033 0.967 4 C 0.097 3.903 5 N -0.581 5.581 6 C 0.553 3.447 7 O -0.527 6.527 8 C -0.113 4.113 9 C -0.082 4.082 10 C 0.084 3.916 11 F -0.109 7.109 12 C 0.083 3.917 13 F -0.105 7.105 14 C 0.054 3.946 15 F -0.105 7.105 16 C 0.146 3.854 17 F -0.092 7.092 18 C 0.065 3.935 19 C 0.155 3.845 20 H 0.031 0.969 21 C -0.126 4.126 22 N -0.572 5.572 23 C -0.286 4.286 24 H 0.051 0.949 25 C 0.055 3.945 26 N -0.854 5.854 27 Si 0.869 3.131 28 H -0.290 1.290 29 H -0.275 1.275 30 H -0.277 1.277 31 H 0.070 0.930 32 H 0.032 0.968 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.184 0.816 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.051 0.949 40 H 0.035 0.965 41 H 0.074 0.926 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.180 -6.353 -8.020 15.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.067 3.933 3 H 0.050 0.950 4 C -0.027 4.027 5 N -0.311 5.311 6 C 0.339 3.661 7 O -0.405 6.405 8 C -0.117 4.117 9 C -0.101 4.101 10 C 0.063 3.937 11 F -0.087 7.087 12 C 0.061 3.939 13 F -0.083 7.083 14 C 0.033 3.967 15 F -0.083 7.083 16 C 0.124 3.876 17 F -0.069 7.069 18 C -0.059 4.059 19 C 0.049 3.951 20 H 0.049 0.951 21 C -0.184 4.184 22 N -0.297 5.297 23 C -0.415 4.415 24 H 0.068 0.932 25 C -0.151 4.151 26 N -0.490 5.490 27 Si 0.696 3.304 28 H -0.216 1.216 29 H -0.201 1.201 30 H -0.203 1.203 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.201 0.799 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.985 -5.814 -8.357 15.726 hybrid contribution -0.352 0.060 0.383 0.524 sum 11.634 -5.754 -7.974 15.233 Atomic orbital electron populations 1.21751 0.94797 1.02517 0.99781 1.20731 0.93811 0.93828 0.84947 0.94964 1.22549 0.77403 1.01513 1.01189 1.47911 1.07822 1.55456 1.19897 1.17591 0.84108 0.80883 0.83537 1.90838 1.77801 1.38890 1.32955 1.19909 0.95229 0.94892 1.01705 1.21701 0.94351 0.97514 0.96544 1.17055 0.91455 0.84434 1.00749 1.91621 1.91046 1.44738 1.81322 1.17381 0.79247 0.94044 1.03215 1.91611 1.29945 1.92877 1.93837 1.16994 0.85561 0.89920 1.04272 1.91613 1.63734 1.67428 1.85510 1.17209 0.89294 0.84561 0.96548 1.91675 1.90898 1.44065 1.80301 1.23380 0.98740 0.97047 0.86709 1.20983 0.88066 0.95355 0.90731 0.95113 1.21634 0.97997 0.99918 0.98868 1.43942 0.99202 1.67517 1.19036 1.18390 1.17270 0.90598 1.15192 0.93151 1.25587 0.99409 0.96058 0.94017 1.70298 1.33792 1.04355 1.40505 0.86981 0.85969 0.78346 0.79153 1.21605 1.20096 1.20284 0.91097 0.94950 0.92159 0.91234 0.89796 0.79897 0.90562 0.89858 0.92974 0.94624 0.90730 0.93352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 7.99 37.16 0.30 -2.33 16 2 C 0.17 3.57 3.58 -67.49 -0.24 3.33 16 3 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.10 1.68 5.91 -3.60 -0.02 1.66 16 5 N -0.58 -9.30 2.95 -173.43 -0.51 -9.81 16 6 C 0.55 8.84 7.36 -12.45 -0.09 8.75 16 7 O -0.53 -10.05 15.35 5.29 0.08 -9.97 16 8 C -0.11 -1.43 5.46 -104.92 -0.57 -2.00 16 9 C -0.08 -0.81 7.35 -39.12 -0.29 -1.09 16 10 C 0.08 0.80 7.29 -39.45 -0.29 0.52 16 11 F -0.11 -1.06 17.17 2.25 0.04 -1.02 16 12 C 0.08 0.85 7.31 -39.20 -0.29 0.57 16 13 F -0.10 -1.12 17.08 2.25 0.04 -1.08 16 14 C 0.05 0.61 7.30 -39.38 -0.29 0.32 16 15 F -0.10 -1.24 17.08 2.25 0.04 -1.20 16 16 C 0.15 1.87 7.25 -38.92 -0.28 1.58 16 17 F -0.09 -1.38 15.92 2.25 0.04 -1.34 16 18 C 0.06 0.93 4.26 -3.37 -0.01 0.92 16 19 C 0.16 2.88 3.67 -67.26 -0.25 2.63 16 20 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 21 C -0.13 -2.15 8.24 37.16 0.31 -1.85 16 22 N -0.57 -12.38 2.73 -156.76 -0.43 -12.81 16 23 C -0.29 -6.77 6.11 -15.06 -0.09 -6.86 16 24 H 0.05 1.22 7.63 -52.49 -0.40 0.82 16 25 C 0.06 1.37 3.06 -17.43 -0.05 1.31 16 26 N -0.85 -22.65 13.38 55.49 0.74 -21.91 16 27 Si 0.87 19.32 29.41 -169.99 -5.00 14.32 16 28 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 30 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 31 H 0.07 1.61 5.74 -51.93 -0.30 1.31 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 1.21 7.60 -51.93 -0.39 0.82 16 34 H 0.07 1.15 8.12 -51.93 -0.42 0.72 16 35 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 36 H 0.18 1.55 5.51 -52.49 -0.29 1.26 16 37 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 38 H 0.08 0.97 3.96 -51.93 -0.21 0.77 16 39 H 0.05 0.86 7.79 -51.93 -0.40 0.45 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 1.51 7.55 -51.93 -0.39 1.12 16 42 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 LS Contribution 354.37 15.07 5.34 5.34 Total: -1.00 -27.40 354.37 -6.20 -33.60 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -4.41 Total: -1.58 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -2.16 Total: 7.47 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.20 Total: -44.53 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.15 Total: -4.64 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.00 Total: 14.32 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.40 -6.20 -33.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585126638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.903 kcal (2) G-P(sol) polarization free energy of solvation -27.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds