Wall clock time and date at job start Tue Mar 31 2020 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.60854 * 2 1 4 4 C 1.53367 * 109.61001 * 120.34574 * 2 1 3 5 5 N 1.46966 * 108.63541 * 169.16871 * 4 2 1 6 6 C 1.34772 * 120.59795 * 124.74762 * 5 4 2 7 7 O 1.21588 * 120.00347 * 175.22845 * 6 5 4 8 8 C 1.47586 * 119.99999 * 355.22558 * 6 5 4 9 9 C 1.39755 * 120.12161 * 325.22207 * 8 6 5 10 10 C 1.37939 * 119.91716 * 179.67326 * 9 8 6 11 11 F 1.35096 * 119.91931 * 180.31922 * 10 9 8 12 12 C 1.38903 * 120.16273 * 0.62391 * 10 9 8 13 13 F 1.35100 * 119.87294 * 179.69702 * 12 10 9 14 14 C 1.38614 * 120.24962 * 359.67269 * 12 10 9 15 15 F 1.35101 * 119.95664 * 180.02562 * 14 12 10 16 16 C 1.38400 * 120.08092 * 0.02562 * 14 12 10 17 17 F 1.35102 * 120.08131 * 180.02562 * 16 14 12 18 18 C 1.46970 * 118.80847 * 304.77323 * 5 4 2 19 19 C 1.53367 * 108.63626 * 55.22718 * 18 5 4 20 20 H 1.09002 * 109.61217 * 190.66352 * 19 18 5 21 21 C 1.53002 * 109.61384 * 70.31690 * 19 18 5 22 22 N 1.46966 * 108.63541 * 310.57271 * 19 18 5 23 23 C 1.36936 * 120.59815 * 235.24998 * 22 19 18 24 24 H 1.07995 * 119.99785 * 150.09518 * 23 22 19 25 25 C 1.38812 * 120.00028 * 330.10099 * 23 22 19 26 26 N 1.31619 * 119.99541 * 343.51538 * 25 23 22 27 27 Si 1.86793 * 120.00335 * 163.51388 * 25 23 22 28 28 H 1.48505 * 109.46871 * 0.02562 * 27 25 23 29 29 H 1.48496 * 109.47191 * 119.99502 * 27 25 23 30 30 H 1.48497 * 109.47434 * 240.00080 * 27 25 23 31 31 H 1.09006 * 109.46935 * 299.65483 * 1 2 3 32 32 H 1.08994 * 109.46962 * 179.65991 * 1 2 3 33 33 H 1.08996 * 109.47316 * 59.65616 * 1 2 3 34 34 H 1.09002 * 109.60834 * 288.90934 * 4 2 1 35 35 H 1.08999 * 109.61484 * 49.42517 * 4 2 1 36 36 H 1.08003 * 120.04311 * 359.96995 * 9 8 6 37 37 H 1.09003 * 109.60735 * 174.96696 * 18 5 4 38 38 H 1.08997 * 109.60768 * 295.48035 * 18 5 4 39 39 H 1.09003 * 109.46541 * 60.00199 * 21 19 18 40 40 H 1.08994 * 109.46917 * 179.97438 * 21 19 18 41 41 H 1.08993 * 109.46906 * 300.00515 * 21 19 18 42 42 H 0.97008 * 119.99772 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0448 -0.7299 1.2468 5 7 3.4909 -0.9473 1.1002 6 6 4.3494 -0.5096 2.0424 7 8 5.5337 -0.7704 1.9541 8 6 3.8520 0.2865 3.1812 9 6 2.7929 1.1806 3.0026 10 6 2.3270 1.9176 4.0715 11 9 1.2989 2.7771 3.9003 12 6 2.9164 1.7828 5.3220 13 9 2.4594 2.5120 6.3634 14 6 3.9713 0.9026 5.5055 15 9 4.5399 0.7758 6.7245 16 6 4.4429 0.1535 4.4416 17 9 5.4708 -0.7048 4.6206 18 6 3.9840 -1.6502 -0.0926 19 6 3.4693 -0.9203 -1.3394 20 1 3.6627 -1.5267 -2.2243 21 6 4.1800 0.4278 -1.4754 22 7 2.0232 -0.7029 -1.1928 23 6 1.1509 -1.1476 -2.1501 24 1 0.1471 -1.4349 -1.8743 25 6 1.5570 -1.2291 -3.4750 26 7 2.6376 -0.5915 -3.8725 27 14 0.5698 -2.2437 -4.6937 28 1 -0.5923 -2.8563 -4.0011 29 1 0.0860 -1.3671 -5.7903 30 1 1.4304 -3.3140 -5.2586 31 1 -0.3633 0.5085 0.8931 32 1 -0.3633 -1.0276 -0.0061 33 1 -0.3634 0.5191 -0.8868 34 1 1.8541 -0.1221 2.1313 35 1 1.5385 -1.6903 1.3437 36 1 2.3365 1.2909 2.0299 37 1 5.0741 -1.6501 -0.0927 38 1 3.6157 -2.6760 -0.0911 39 1 5.2537 0.2646 -1.5688 40 1 3.8129 0.9442 -2.3622 41 1 3.9802 1.0345 -0.5923 42 1 2.9212 -0.6481 -4.7985 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585126639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:26 Heat of formation + Delta-G solvation = -127.725071 kcal Electronic energy + Delta-G solvation = -34014.251911 eV Core-core repulsion = 28882.771614 eV Total energy + Delta-G solvation = -5131.480297 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.120 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -50.30097 -49.84704 -49.24382 -48.76074 -40.64031 -38.49040 -37.47665 -34.35302 -33.07157 -31.86717 -30.87303 -30.66169 -28.12665 -26.57447 -26.14895 -24.49515 -23.76001 -23.59408 -21.22603 -20.54874 -19.12706 -18.85945 -18.78548 -18.26688 -17.48888 -17.02121 -16.66939 -16.53230 -16.16263 -16.05841 -15.71280 -15.52664 -15.43538 -15.23081 -15.03747 -14.78805 -14.65105 -14.03352 -14.01864 -13.69002 -13.55772 -13.38437 -12.91216 -12.59329 -12.42937 -12.13517 -12.12212 -11.83868 -11.42634 -11.32606 -11.11439 -10.88594 -10.74239 -10.73816 -10.28886 -10.19713 -10.03353 -9.85274 -9.67631 -9.38099 -9.22117 -8.63458 -8.39584 -6.78203 -5.93044 -3.39380 -0.20704 0.06569 2.09224 2.54626 2.89058 3.05565 3.28344 3.30164 3.37855 3.38425 3.58527 3.78554 3.87148 3.92916 4.34949 4.56282 4.80865 4.95291 5.03652 5.10366 5.22327 5.27809 5.39577 5.43771 5.67013 5.85246 5.94787 5.98481 6.08195 6.12058 6.18797 6.32352 6.43981 6.58098 6.71121 6.78107 6.87058 6.90282 7.42497 7.49152 7.60891 7.73158 8.16104 8.28879 9.04921 9.66096 10.22221 11.13953 Molecular weight = 360.12amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.003217 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.899871 B = 8702.144897 C = 9742.156834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.153 3.847 3 H 0.032 0.968 4 C 0.063 3.937 5 N -0.578 5.578 6 C 0.552 3.448 7 O -0.526 6.526 8 C -0.112 4.112 9 C -0.082 4.082 10 C 0.086 3.914 11 F -0.108 7.108 12 C 0.081 3.919 13 F -0.105 7.105 14 C 0.054 3.946 15 F -0.105 7.105 16 C 0.143 3.857 17 F -0.094 7.094 18 C 0.093 3.907 19 C 0.179 3.821 20 H 0.109 0.891 21 C -0.141 4.141 22 N -0.577 5.577 23 C -0.258 4.258 24 H 0.073 0.927 25 C 0.009 3.991 26 N -0.894 5.894 27 Si 0.901 3.099 28 H -0.278 1.278 29 H -0.291 1.291 30 H -0.289 1.289 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.185 0.815 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.030 0.970 40 H 0.078 0.922 41 H 0.021 0.979 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.843 3.452 15.603 16.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.045 3.955 3 H 0.050 0.950 4 C -0.061 4.061 5 N -0.308 5.308 6 C 0.338 3.662 7 O -0.404 6.404 8 C -0.116 4.116 9 C -0.101 4.101 10 C 0.065 3.935 11 F -0.086 7.086 12 C 0.060 3.940 13 F -0.083 7.083 14 C 0.033 3.967 15 F -0.083 7.083 16 C 0.121 3.879 17 F -0.071 7.071 18 C -0.030 4.030 19 C 0.072 3.928 20 H 0.127 0.873 21 C -0.200 4.200 22 N -0.300 5.300 23 C -0.387 4.387 24 H 0.090 0.910 25 C -0.191 4.191 26 N -0.538 5.538 27 Si 0.730 3.270 28 H -0.203 1.203 29 H -0.218 1.218 30 H -0.216 1.216 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.202 0.798 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.097 0.903 41 H 0.040 0.960 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.163 3.310 15.425 15.777 hybrid contribution -0.487 -0.278 -0.178 0.589 sum -0.650 3.031 15.247 15.559 Atomic orbital electron populations 1.21793 0.94816 1.02071 1.00896 1.20781 0.93616 0.93814 0.87300 0.95027 1.23212 0.79920 1.02355 1.00613 1.47909 1.06977 1.55250 1.20676 1.17566 0.86288 0.80509 0.81825 1.90838 1.15452 1.57747 1.76320 1.19948 0.97519 1.00523 0.93653 1.21702 0.94580 0.93312 1.00553 1.17069 0.90179 0.94335 0.91896 1.91627 1.54609 1.66718 1.95631 1.17377 0.96176 0.95533 0.84954 1.91609 1.87326 1.74408 1.54939 1.16983 0.96764 1.01015 0.81986 1.91611 1.83070 1.94702 1.38961 1.17189 0.88019 0.91234 0.91494 1.91664 1.54068 1.65989 1.95417 1.22672 0.99870 0.95763 0.84652 1.20775 0.82910 0.95096 0.94057 0.87338 1.22008 0.97794 0.99181 1.01028 1.44133 1.01902 1.64130 1.19799 1.19182 0.96134 1.37177 0.86241 0.90963 1.25089 0.98013 0.99058 0.96905 1.69993 1.25741 1.41934 1.16094 0.86264 0.79534 0.79893 0.81261 1.20278 1.21761 1.21555 0.93950 0.92254 0.91262 0.89727 0.90678 0.79770 0.89694 0.91625 0.95069 0.90309 0.96031 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 7.95 37.16 0.30 -1.80 16 2 C 0.15 2.58 2.93 -67.48 -0.20 2.38 16 3 H 0.03 0.56 6.69 -51.93 -0.35 0.21 16 4 C 0.06 0.90 5.01 -3.60 -0.02 0.88 16 5 N -0.58 -9.33 2.61 -173.70 -0.45 -9.78 16 6 C 0.55 8.93 7.29 -12.45 -0.09 8.84 16 7 O -0.53 -10.12 15.47 5.29 0.08 -10.04 16 8 C -0.11 -1.43 5.43 -104.92 -0.57 -2.00 16 9 C -0.08 -0.88 7.35 -39.12 -0.29 -1.17 16 10 C 0.09 0.86 7.29 -39.44 -0.29 0.57 16 11 F -0.11 -1.11 17.17 2.25 0.04 -1.07 16 12 C 0.08 0.84 7.31 -39.20 -0.29 0.55 16 13 F -0.10 -1.12 17.08 2.25 0.04 -1.08 16 14 C 0.05 0.60 7.30 -39.38 -0.29 0.31 16 15 F -0.11 -1.21 17.08 2.25 0.04 -1.17 16 16 C 0.14 1.78 7.24 -38.93 -0.28 1.50 16 17 F -0.09 -1.35 16.00 2.25 0.04 -1.31 16 18 C 0.09 1.68 5.96 -3.60 -0.02 1.66 16 19 C 0.18 3.71 2.34 -67.49 -0.16 3.56 16 20 H 0.11 2.59 6.10 -51.93 -0.32 2.27 16 21 C -0.14 -2.90 8.96 37.16 0.33 -2.57 16 22 N -0.58 -12.15 2.68 -157.02 -0.42 -12.58 16 23 C -0.26 -6.08 8.56 -15.06 -0.13 -6.21 16 24 H 0.07 1.67 6.24 -52.49 -0.33 1.34 16 25 C 0.01 0.22 4.92 -17.43 -0.09 0.13 16 26 N -0.89 -23.09 10.14 55.49 0.56 -22.53 16 27 Si 0.90 19.89 29.58 -169.99 -5.03 14.86 16 28 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 29 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 30 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.92 7.32 -51.93 -0.38 0.54 16 33 H 0.07 1.18 7.73 -51.93 -0.40 0.78 16 34 H 0.09 0.96 3.56 -51.93 -0.18 0.78 16 35 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 36 H 0.19 1.95 4.92 -52.48 -0.26 1.69 16 37 H 0.08 1.56 6.99 -51.93 -0.36 1.20 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 1.84 7.12 -51.93 -0.37 1.47 16 41 H 0.02 0.41 7.00 -51.93 -0.36 0.05 16 42 H 0.25 6.49 8.31 -40.82 -0.34 6.15 16 LS Contribution 349.49 15.07 5.27 5.27 Total: -1.00 -26.55 349.49 -6.05 -32.60 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.14 Total: 0.20 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -2.07 Total: 6.64 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -0.31 Total: -44.89 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.15 Total: -4.64 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -26.55 -6.05 -32.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585126639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.130 kcal (2) G-P(sol) polarization free energy of solvation -26.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds