Wall clock time and date at job start Tue Mar 31 2020 06:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.60854 * 2 1 4 4 C 1.53367 * 109.61001 * 120.34574 * 2 1 3 5 5 N 1.46966 * 108.63541 * 169.16871 * 4 2 1 6 6 C 1.34772 * 120.59795 * 124.74762 * 5 4 2 7 7 O 1.21588 * 120.00347 * 175.22845 * 6 5 4 8 8 C 1.47586 * 119.99999 * 355.22558 * 6 5 4 9 9 C 1.39755 * 120.12161 * 325.22207 * 8 6 5 10 10 C 1.37939 * 119.91716 * 179.67326 * 9 8 6 11 11 F 1.35096 * 119.91931 * 180.31922 * 10 9 8 12 12 C 1.38903 * 120.16273 * 0.62391 * 10 9 8 13 13 F 1.35100 * 119.87294 * 179.69702 * 12 10 9 14 14 C 1.38614 * 120.24962 * 359.67269 * 12 10 9 15 15 F 1.35101 * 119.95664 * 180.02562 * 14 12 10 16 16 C 1.38400 * 120.08092 * 0.02562 * 14 12 10 17 17 F 1.35102 * 120.08131 * 180.02562 * 16 14 12 18 18 C 1.46970 * 118.80847 * 304.77323 * 5 4 2 19 19 C 1.53367 * 108.63626 * 55.22718 * 18 5 4 20 20 H 1.09002 * 109.61217 * 190.66352 * 19 18 5 21 21 C 1.53002 * 109.61384 * 70.31690 * 19 18 5 22 22 N 1.46966 * 108.63541 * 310.57271 * 19 18 5 23 23 C 1.36936 * 120.59815 * 235.24998 * 22 19 18 24 24 H 1.07995 * 119.99785 * 150.09518 * 23 22 19 25 25 C 1.38812 * 120.00028 * 330.10099 * 23 22 19 26 26 N 1.31619 * 119.99541 * 343.51538 * 25 23 22 27 27 Si 1.86793 * 120.00335 * 163.51388 * 25 23 22 28 28 H 1.48505 * 109.46871 * 0.02562 * 27 25 23 29 29 H 1.48496 * 109.47191 * 119.99502 * 27 25 23 30 30 H 1.48497 * 109.47434 * 240.00080 * 27 25 23 31 31 H 1.09006 * 109.46935 * 299.65483 * 1 2 3 32 32 H 1.08994 * 109.46962 * 179.65991 * 1 2 3 33 33 H 1.08996 * 109.47316 * 59.65616 * 1 2 3 34 34 H 1.09002 * 109.60834 * 288.90934 * 4 2 1 35 35 H 1.08999 * 109.61484 * 49.42517 * 4 2 1 36 36 H 1.08003 * 120.04311 * 359.96995 * 9 8 6 37 37 H 1.09003 * 109.60735 * 174.96696 * 18 5 4 38 38 H 1.08997 * 109.60768 * 295.48035 * 18 5 4 39 39 H 1.09003 * 109.46541 * 60.00199 * 21 19 18 40 40 H 1.08994 * 109.46917 * 179.97438 * 21 19 18 41 41 H 1.08993 * 109.46906 * 300.00515 * 21 19 18 42 42 H 0.97008 * 119.99772 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0448 -0.7299 1.2468 5 7 3.4909 -0.9473 1.1002 6 6 4.3494 -0.5096 2.0424 7 8 5.5337 -0.7704 1.9541 8 6 3.8520 0.2865 3.1812 9 6 2.7929 1.1806 3.0026 10 6 2.3270 1.9176 4.0715 11 9 1.2989 2.7771 3.9003 12 6 2.9164 1.7828 5.3220 13 9 2.4594 2.5120 6.3634 14 6 3.9713 0.9026 5.5055 15 9 4.5399 0.7758 6.7245 16 6 4.4429 0.1535 4.4416 17 9 5.4708 -0.7048 4.6206 18 6 3.9840 -1.6502 -0.0926 19 6 3.4693 -0.9203 -1.3394 20 1 3.6627 -1.5267 -2.2243 21 6 4.1800 0.4278 -1.4754 22 7 2.0232 -0.7029 -1.1928 23 6 1.1509 -1.1476 -2.1501 24 1 0.1471 -1.4349 -1.8743 25 6 1.5570 -1.2291 -3.4750 26 7 2.6376 -0.5915 -3.8725 27 14 0.5698 -2.2437 -4.6937 28 1 -0.5923 -2.8563 -4.0011 29 1 0.0860 -1.3671 -5.7903 30 1 1.4304 -3.3140 -5.2586 31 1 -0.3633 0.5085 0.8931 32 1 -0.3633 -1.0276 -0.0061 33 1 -0.3634 0.5191 -0.8868 34 1 1.8541 -0.1221 2.1313 35 1 1.5385 -1.6903 1.3437 36 1 2.3365 1.2909 2.0299 37 1 5.0741 -1.6501 -0.0927 38 1 3.6157 -2.6760 -0.0911 39 1 5.2537 0.2646 -1.5688 40 1 3.8129 0.9442 -2.3622 41 1 3.9802 1.0345 -0.5923 42 1 2.9212 -0.6481 -4.7985 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585126639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:25 Heat of formation + Delta-G solvation = -140.337618 kcal Electronic energy + Delta-G solvation = -34014.798832 eV Core-core repulsion = 28882.771614 eV Total energy + Delta-G solvation = -5132.027218 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.120 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -51.19212 -50.76615 -50.16529 -49.66474 -41.86054 -39.62569 -38.87282 -35.85100 -34.47357 -33.41163 -32.10457 -31.60648 -29.76245 -27.89926 -27.47698 -25.88333 -24.97789 -24.72341 -22.63592 -21.81744 -20.48343 -19.92279 -19.75651 -19.36768 -18.40596 -18.11344 -17.84902 -17.66430 -17.36597 -17.10279 -16.93974 -16.84768 -16.49273 -16.27590 -16.13924 -15.98033 -15.68217 -15.53657 -15.34333 -15.17497 -14.81814 -14.68556 -14.25472 -13.76256 -13.59021 -13.49336 -13.36278 -13.15420 -12.86003 -12.80968 -12.66051 -12.34806 -12.28687 -12.23583 -11.96409 -11.77169 -11.53071 -11.46828 -11.07822 -10.47519 -10.37872 -10.14184 -9.81136 -8.50043 -7.77423 -5.23647 -1.14591 -0.83027 1.08120 1.50300 1.53522 1.56225 1.62100 1.78278 1.90727 2.36278 2.56452 2.68717 2.82800 2.87604 2.97949 3.38401 3.51240 3.61938 3.84712 4.07894 4.10658 4.14245 4.18365 4.33606 4.37763 4.45475 4.61429 4.64524 4.71651 4.83341 4.90587 4.99045 5.05018 5.09953 5.18836 5.28939 5.43108 5.61505 5.72613 5.77906 5.88802 6.29128 6.49273 6.87363 7.24089 7.92732 8.44600 9.27135 Molecular weight = 360.12amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.003217 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.899871 B = 8702.144897 C = 9742.156834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.145 3.855 3 H 0.031 0.969 4 C 0.070 3.930 5 N -0.580 5.580 6 C 0.554 3.446 7 O -0.561 6.561 8 C -0.116 4.116 9 C -0.069 4.069 10 C 0.106 3.894 11 F -0.103 7.103 12 C 0.096 3.904 13 F -0.102 7.102 14 C 0.064 3.936 15 F -0.107 7.107 16 C 0.138 3.862 17 F -0.108 7.108 18 C 0.106 3.894 19 C 0.181 3.819 20 H 0.073 0.927 21 C -0.126 4.126 22 N -0.592 5.592 23 C -0.248 4.248 24 H 0.078 0.922 25 C -0.042 4.042 26 N -0.922 5.922 27 Si 0.952 3.048 28 H -0.267 1.267 29 H -0.301 1.301 30 H -0.299 1.299 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.121 0.879 35 H 0.081 0.919 36 H 0.192 0.808 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.033 0.967 40 H 0.047 0.953 41 H 0.031 0.969 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.492 4.165 18.151 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.039 3.961 3 H 0.049 0.951 4 C -0.052 4.052 5 N -0.310 5.310 6 C 0.342 3.658 7 O -0.441 6.441 8 C -0.121 4.121 9 C -0.088 4.088 10 C 0.085 3.915 11 F -0.081 7.081 12 C 0.075 3.925 13 F -0.080 7.080 14 C 0.042 3.958 15 F -0.085 7.085 16 C 0.116 3.884 17 F -0.086 7.086 18 C -0.018 4.018 19 C 0.073 3.927 20 H 0.091 0.909 21 C -0.185 4.185 22 N -0.315 5.315 23 C -0.378 4.378 24 H 0.096 0.904 25 C -0.238 4.238 26 N -0.568 5.568 27 Si 0.782 3.218 28 H -0.191 1.191 29 H -0.229 1.229 30 H -0.227 1.227 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.138 0.862 35 H 0.100 0.900 36 H 0.209 0.791 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.853 4.028 18.018 18.555 hybrid contribution 0.005 -0.422 -0.848 0.947 sum -1.848 3.606 17.170 17.642 Atomic orbital electron populations 1.21736 0.93204 1.02108 1.01895 1.21035 0.95017 0.93608 0.86452 0.95099 1.23238 0.78472 1.03048 1.00483 1.47910 1.07911 1.55057 1.20099 1.17932 0.85693 0.79989 0.82225 1.90823 1.17042 1.59037 1.77229 1.19550 0.98759 1.01311 0.92485 1.21577 0.93715 0.92609 1.00885 1.16837 0.89715 0.93683 0.91294 1.91655 1.54366 1.66504 1.95560 1.17298 0.95463 0.94767 0.85009 1.91629 1.87188 1.74257 1.54971 1.16833 0.96711 1.00748 0.81502 1.91614 1.83171 1.94703 1.39016 1.17234 0.87858 0.91452 0.91838 1.91629 1.54859 1.66619 1.95511 1.22297 0.99399 0.95621 0.84489 1.20567 0.83390 0.94684 0.94031 0.90870 1.21813 0.97759 0.99036 0.99851 1.44315 1.01633 1.64936 1.20625 1.19455 0.96399 1.35387 0.86541 0.90397 1.25645 0.99094 1.00600 0.98452 1.70135 1.27299 1.43768 1.15559 0.85450 0.78578 0.78314 0.79462 1.19148 1.22863 1.22654 0.89722 0.92618 0.93566 0.86184 0.90033 0.79113 0.90304 0.91439 0.94813 0.93428 0.94964 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.61 7.95 71.98 0.57 -3.03 16 2 C 0.15 4.58 2.93 45.03 0.13 4.72 16 3 H 0.03 1.01 6.69 -2.39 -0.02 0.99 16 4 C 0.07 1.79 5.01 86.41 0.43 2.22 16 5 N -0.58 -17.79 2.61 -821.71 -2.14 -19.93 16 6 C 0.55 17.06 7.29 86.71 0.63 17.69 16 7 O -0.56 -21.34 15.47 -3.99 -0.06 -21.41 16 8 C -0.12 -2.69 5.43 -20.06 -0.11 -2.80 16 9 C -0.07 -1.21 7.35 22.57 0.17 -1.04 16 10 C 0.11 1.67 7.29 22.36 0.16 1.84 16 11 F -0.10 -1.66 17.17 44.97 0.77 -0.89 16 12 C 0.10 1.64 7.31 22.52 0.16 1.80 16 13 F -0.10 -1.82 17.08 44.97 0.77 -1.05 16 14 C 0.06 1.23 7.30 22.40 0.16 1.39 16 15 F -0.11 -2.21 17.08 44.97 0.77 -1.44 16 16 C 0.14 3.15 7.24 22.69 0.16 3.32 16 17 F -0.11 -3.00 16.00 44.97 0.72 -2.28 16 18 C 0.11 3.80 5.96 86.41 0.51 4.31 16 19 C 0.18 7.61 2.34 45.03 0.11 7.72 16 20 H 0.07 3.64 6.10 -2.39 -0.01 3.62 16 21 C -0.13 -5.25 8.96 71.98 0.65 -4.60 16 22 N -0.59 -24.67 2.68 -650.69 -1.74 -26.41 16 23 C -0.25 -11.62 8.56 84.03 0.72 -10.90 16 24 H 0.08 3.52 6.24 -2.91 -0.02 3.50 16 25 C -0.04 -2.09 4.92 84.86 0.42 -1.68 16 26 N -0.92 -49.30 10.14 21.65 0.22 -49.08 16 27 Si 0.95 41.61 29.58 68.60 2.03 43.64 16 28 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 29 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 30 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 31 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.05 1.57 7.32 -2.39 -0.02 1.55 16 33 H 0.05 1.48 7.73 -2.39 -0.02 1.46 16 34 H 0.12 2.21 3.56 -2.39 -0.01 2.20 16 35 H 0.08 2.04 8.12 -2.39 -0.02 2.02 16 36 H 0.19 3.22 4.92 -2.91 -0.01 3.20 16 37 H 0.08 2.93 6.99 -2.39 -0.02 2.92 16 38 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.05 2.28 7.12 -2.39 -0.02 2.26 16 41 H 0.03 1.23 7.00 -2.39 -0.02 1.21 16 42 H 0.24 13.06 8.31 -92.70 -0.77 12.29 16 Total: -1.00 -58.61 349.49 7.33 -51.28 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 1.11 Total: 6.60 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 4.88 Total: 20.96 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: -3.67 Total: -95.42 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.06 Total: -21.41 kcal Atomic # 9 Polarization: -8.68 SS G_CDS: 3.03 Total: -5.65 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -58.61 7.33 -51.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585126639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.058 kcal (2) G-P(sol) polarization free energy of solvation -58.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds