Wall clock time and date at job start Tue Mar 31 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.74578 * 2 1 4 4 C 1.53811 * 109.76336 * 239.36701 * 2 1 3 5 5 N 1.46961 * 108.58033 * 289.94928 * 4 2 1 6 6 C 1.34777 * 120.59529 * 124.66725 * 5 4 2 7 7 O 1.21590 * 120.00210 * 2.00223 * 6 5 4 8 8 C 1.47582 * 120.00013 * 182.00792 * 6 5 4 9 9 C 1.39760 * 120.12100 * 326.25068 * 8 6 5 10 10 C 1.37942 * 119.91200 * 179.67977 * 9 8 6 11 11 F 1.35098 * 119.91302 * 180.32685 * 10 9 8 12 12 C 1.38902 * 120.16677 * 0.62046 * 10 9 8 13 13 F 1.35097 * 119.87438 * 179.69978 * 12 10 9 14 14 C 1.38604 * 120.25059 * 359.67929 * 12 10 9 15 15 F 1.35102 * 119.96304 * 180.02562 * 14 12 10 16 16 C 1.38404 * 120.08120 * 359.97438 * 14 12 10 17 17 F 1.35100 * 120.08388 * 180.02562 * 16 14 12 18 18 C 1.46969 * 118.81252 * 304.64789 * 5 4 2 19 19 C 1.53367 * 108.63317 * 55.22310 * 18 5 4 20 20 H 1.09001 * 109.75181 * 70.41057 * 19 18 5 21 21 C 1.53005 * 109.60849 * 190.83297 * 19 18 5 22 22 N 1.46961 * 108.63804 * 310.57758 * 19 18 5 23 23 C 1.36935 * 120.59432 * 235.20233 * 22 19 18 24 24 H 1.08004 * 119.99599 * 39.11853 * 23 22 19 25 25 C 1.38809 * 120.00280 * 219.11689 * 23 22 19 26 26 N 1.31618 * 119.99925 * 1.15900 * 25 23 22 27 27 Si 1.86800 * 120.00244 * 181.16469 * 25 23 22 28 28 H 1.48501 * 109.46954 * 270.00115 * 27 25 23 29 29 H 1.48504 * 109.47057 * 29.99479 * 27 25 23 30 30 H 1.48494 * 109.47295 * 149.99774 * 27 25 23 31 31 H 1.08996 * 109.47496 * 299.57913 * 1 2 3 32 32 H 1.09004 * 109.46762 * 59.58298 * 1 2 3 33 33 H 1.09002 * 109.47033 * 179.57423 * 1 2 3 34 34 H 1.08998 * 109.74317 * 170.15780 * 4 2 1 35 35 H 1.09000 * 109.67098 * 49.69543 * 4 2 1 36 36 H 1.07993 * 120.04248 * 359.97438 * 9 8 6 37 37 H 1.09004 * 109.60500 * 295.47856 * 18 5 4 38 38 H 1.09000 * 109.75223 * 175.05543 * 18 5 4 39 39 H 1.08994 * 109.47458 * 179.14874 * 21 19 18 40 40 H 1.09002 * 109.47274 * 299.14910 * 21 19 18 41 41 H 1.09001 * 109.47241 * 59.14527 * 21 19 18 42 42 H 0.96998 * 119.99964 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0501 -0.7376 -1.2455 5 7 1.7612 -2.1707 -1.0958 6 6 1.0612 -2.8316 -2.0391 7 8 0.6940 -2.2508 -3.0422 8 6 0.7404 -4.2602 -1.8544 9 6 1.6375 -5.1002 -1.1889 10 6 1.3303 -6.4334 -1.0129 11 9 2.1945 -7.2439 -0.3638 12 6 0.1374 -6.9459 -1.5067 13 9 -0.1548 -8.2538 -1.3363 14 6 -0.7545 -6.1204 -2.1732 15 9 -1.9132 -6.6249 -2.6507 16 6 -0.4599 -4.7796 -2.3494 17 9 -1.3294 -3.9748 -2.9986 18 6 2.2495 -2.8705 0.1008 19 6 1.7342 -2.1341 1.3436 20 1 0.6587 -2.2824 1.4401 21 6 2.4405 -2.6729 2.5893 22 7 2.0232 -0.7010 1.1938 23 6 2.7343 -0.0295 2.1523 24 1 3.5739 -0.5071 2.6354 25 6 2.3760 1.2649 2.5030 26 7 1.3389 1.8385 1.9307 27 14 3.3659 2.1926 3.7870 28 1 2.7947 1.9352 5.1334 29 1 4.7773 1.7321 3.7518 30 1 3.3126 3.6479 3.4967 31 1 -0.3634 0.5072 0.8937 32 1 -0.3633 0.5203 -0.8863 33 1 -0.3633 -1.0277 -0.0076 34 1 3.1259 -0.5891 -1.3389 35 1 1.5494 -0.3544 -2.1346 36 1 2.5678 -4.7049 -0.8088 37 1 3.3395 -2.8739 0.1032 38 1 1.8805 -3.8961 0.1040 39 1 2.0838 -2.1378 3.4693 40 1 2.2248 -3.7358 2.6982 41 1 3.5163 -2.5291 2.4879 42 1 1.0887 2.7432 2.1754 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585126640.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:31 Heat of formation + Delta-G solvation = -124.774177 kcal Electronic energy + Delta-G solvation = -33987.247250 eV Core-core repulsion = 28855.894913 eV Total energy + Delta-G solvation = -5131.352337 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.120 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -50.29479 -49.84060 -49.24030 -48.74748 -40.61916 -38.48202 -37.40389 -34.35879 -32.95053 -31.91363 -30.83018 -30.67178 -28.06870 -26.54660 -26.15070 -24.53575 -23.80482 -23.49652 -21.23383 -20.46624 -19.14762 -18.96880 -18.64838 -18.24409 -17.49401 -17.01362 -16.69412 -16.40476 -16.19407 -16.13664 -15.65412 -15.31077 -15.27640 -15.24763 -15.17640 -14.83147 -14.69893 -14.13185 -14.06275 -13.56987 -13.43030 -13.36917 -12.90427 -12.50339 -12.42249 -12.14661 -12.09736 -11.78033 -11.44068 -11.26440 -11.03708 -10.85126 -10.72326 -10.67739 -10.27969 -10.16896 -10.00459 -9.90430 -9.64098 -9.36113 -9.20154 -8.55820 -8.39308 -6.60127 -5.91681 -3.49655 -0.19684 0.06761 2.10508 2.54276 2.85824 3.13602 3.28548 3.30145 3.36312 3.37115 3.58811 3.77199 3.85763 3.93699 4.35616 4.56744 4.80635 4.97199 5.01131 5.06659 5.26355 5.27856 5.42941 5.47695 5.68629 5.87996 5.96032 6.04693 6.11096 6.15451 6.22983 6.37851 6.48348 6.64840 6.78328 6.85731 6.93523 6.97357 7.49993 7.53607 7.64594 7.76256 8.18041 8.39231 9.10150 9.66290 10.28407 11.14501 Molecular weight = 360.12amu Principal moments of inertia in cm(-1) A = 0.016187 B = 0.003253 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.398404 B = 8606.144512 C = 9619.684883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.181 3.819 3 H 0.108 0.892 4 C 0.091 3.909 5 N -0.576 5.576 6 C 0.551 3.449 7 O -0.527 6.527 8 C -0.111 4.111 9 C -0.088 4.088 10 C 0.084 3.916 11 F -0.109 7.109 12 C 0.081 3.919 13 F -0.105 7.105 14 C 0.055 3.945 15 F -0.105 7.105 16 C 0.145 3.855 17 F -0.092 7.092 18 C 0.058 3.942 19 C 0.154 3.846 20 H 0.033 0.967 21 C -0.135 4.135 22 N -0.580 5.580 23 C -0.260 4.260 24 H 0.067 0.933 25 C 0.017 3.983 26 N -0.895 5.895 27 Si 0.901 3.099 28 H -0.286 1.286 29 H -0.279 1.279 30 H -0.290 1.290 31 H 0.078 0.922 32 H 0.029 0.971 33 H 0.019 0.981 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.188 0.812 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.039 0.961 41 H 0.056 0.944 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 -15.435 -5.572 16.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.074 3.926 3 H 0.126 0.874 4 C -0.032 4.032 5 N -0.306 5.306 6 C 0.337 3.663 7 O -0.404 6.404 8 C -0.115 4.115 9 C -0.107 4.107 10 C 0.064 3.936 11 F -0.087 7.087 12 C 0.060 3.940 13 F -0.083 7.083 14 C 0.033 3.967 15 F -0.083 7.083 16 C 0.123 3.877 17 F -0.070 7.070 18 C -0.066 4.066 19 C 0.046 3.954 20 H 0.051 0.949 21 C -0.193 4.193 22 N -0.303 5.303 23 C -0.390 4.390 24 H 0.084 0.916 25 C -0.183 4.183 26 N -0.537 5.537 27 Si 0.731 3.269 28 H -0.213 1.213 29 H -0.204 1.204 30 H -0.217 1.217 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.038 0.962 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.205 0.795 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.055 -14.967 -6.065 16.149 hybrid contribution 0.027 0.084 0.736 0.741 sum -0.029 -14.883 -5.329 15.808 Atomic orbital electron populations 1.21998 0.97971 0.98423 1.01420 1.20850 0.92420 0.96830 0.82460 0.87386 1.22762 1.00438 0.77959 1.01992 1.47906 1.51816 1.11314 1.19554 1.17565 0.79972 0.84562 0.84177 1.90839 1.53398 1.67865 1.28346 1.19946 0.93755 0.96722 1.01115 1.21764 1.02360 0.90019 0.96541 1.17060 0.88088 0.88872 0.99630 1.91617 1.67171 1.71759 1.78201 1.17371 0.94335 0.79738 1.02603 1.91608 1.93076 1.30394 1.93228 1.16999 0.85589 0.90502 1.03579 1.91614 1.43989 1.86916 1.85774 1.17200 0.88802 0.86037 0.95678 1.91675 1.66560 1.71475 1.77249 1.23392 0.99743 0.96645 0.86800 1.20798 0.96554 0.86911 0.91115 0.94944 1.21754 1.00836 0.98093 0.98589 1.44064 1.62972 1.02979 1.20239 1.19029 1.07791 0.97045 1.15130 0.91586 1.25387 0.96101 0.99063 0.97783 1.69887 1.26506 1.14117 1.43211 0.86334 0.79683 0.79045 0.81865 1.21303 1.20414 1.21655 0.90325 0.95212 0.96193 0.91636 0.89802 0.79523 0.90487 0.89255 0.91338 0.94153 0.92488 0.93391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.93 37.16 0.33 -2.65 16 2 C 0.18 3.85 2.34 -67.25 -0.16 3.69 16 3 H 0.11 2.62 6.30 -51.93 -0.33 2.29 16 4 C 0.09 1.65 5.99 -3.37 -0.02 1.63 16 5 N -0.58 -9.30 2.59 -173.42 -0.45 -9.75 16 6 C 0.55 8.91 7.34 -12.45 -0.09 8.82 16 7 O -0.53 -10.17 15.42 5.29 0.08 -10.09 16 8 C -0.11 -1.41 5.52 -104.92 -0.58 -1.99 16 9 C -0.09 -0.86 7.40 -39.12 -0.29 -1.15 16 10 C 0.08 0.80 7.29 -39.44 -0.29 0.52 16 11 F -0.11 -1.05 17.17 2.25 0.04 -1.01 16 12 C 0.08 0.84 7.31 -39.20 -0.29 0.55 16 13 F -0.10 -1.12 17.08 2.25 0.04 -1.08 16 14 C 0.05 0.62 7.30 -39.38 -0.29 0.34 16 15 F -0.10 -1.25 17.08 2.25 0.04 -1.21 16 16 C 0.14 1.87 7.24 -38.92 -0.28 1.59 16 17 F -0.09 -1.39 15.97 2.25 0.04 -1.36 16 18 C 0.06 0.82 4.44 -3.60 -0.02 0.80 16 19 C 0.15 2.72 3.22 -67.49 -0.22 2.50 16 20 H 0.03 0.63 7.39 -51.93 -0.38 0.25 16 21 C -0.13 -2.12 8.05 37.16 0.30 -1.82 16 22 N -0.58 -12.47 2.65 -156.77 -0.42 -12.89 16 23 C -0.26 -6.20 8.29 -15.06 -0.12 -6.32 16 24 H 0.07 1.54 6.52 -52.48 -0.34 1.20 16 25 C 0.02 0.42 5.21 -17.43 -0.09 0.33 16 26 N -0.89 -23.28 9.78 55.49 0.54 -22.73 16 27 Si 0.90 19.94 29.55 -169.99 -5.02 14.91 16 28 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 29 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 30 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 31 H 0.08 1.90 6.94 -51.93 -0.36 1.54 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.02 0.40 7.01 -51.93 -0.36 0.04 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.56 6.98 -51.93 -0.36 1.19 16 36 H 0.19 1.55 5.40 -52.49 -0.28 1.27 16 37 H 0.08 1.02 8.12 -51.93 -0.42 0.60 16 38 H 0.09 1.00 3.48 -53.71 -0.19 0.82 16 39 H 0.07 1.22 7.71 -51.93 -0.40 0.82 16 40 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.89 7.36 -51.93 -0.38 0.51 16 42 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 350.45 15.07 5.28 5.28 Total: -1.00 -27.08 350.45 -6.15 -33.23 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.22 Total: -0.14 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -2.10 Total: 6.83 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.32 Total: -45.37 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.09 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.15 Total: -4.66 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.08 -6.15 -33.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585126640.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.541 kcal (2) G-P(sol) polarization free energy of solvation -27.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds