Wall clock time and date at job start Tue Mar 31 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.66663 * 2 1 4 4 C 1.54711 * 110.75010 * 236.78670 * 2 1 3 5 5 C 1.51636 * 101.92330 * 216.18873 * 4 2 1 6 6 C 1.37748 * 132.17487 * 195.78021 * 5 4 2 7 7 C 1.38354 * 119.97706 * 179.45132 * 6 5 4 8 8 S 1.76201 * 120.11278 * 179.88053 * 7 6 5 9 9 O 1.42102 * 106.40536 * 336.45854 * 8 7 6 10 10 O 1.42101 * 106.40027 * 203.53368 * 8 7 6 11 11 N 1.65608 * 107.21744 * 89.99907 * 8 7 6 12 12 C 1.36912 * 120.00038 * 89.99486 * 11 8 7 13 13 H 1.08003 * 119.99917 * 311.98412 * 12 11 8 14 14 C 1.38812 * 120.00032 * 131.98027 * 12 11 8 15 15 N 1.31570 * 119.99815 * 345.33784 * 14 12 11 16 16 Si 1.86800 * 120.00361 * 165.33153 * 14 12 11 17 17 H 1.48500 * 109.47201 * 180.02562 * 16 14 12 18 18 H 1.48499 * 109.46905 * 300.00653 * 16 14 12 19 19 H 1.48498 * 109.46771 * 60.00241 * 16 14 12 20 20 C 1.38834 * 119.99710 * 269.99953 * 11 8 7 21 21 C 1.39229 * 119.70682 * 173.20871 * 20 11 8 22 22 C 1.38315 * 119.08770 * 179.75280 * 21 20 11 23 23 C 1.38882 * 118.50525 * 0.50714 * 22 21 20 24 24 C 1.38125 * 119.34215 * 359.73207 * 23 22 21 25 25 N 1.31899 * 120.86340 * 0.02562 * 24 23 22 26 26 C 1.38284 * 119.76726 * 0.15648 * 7 6 5 27 27 C 1.37934 * 120.35294 * 359.66489 * 26 7 6 28 28 C 1.38888 * 107.03978 * 15.47063 * 5 4 2 29 29 O 1.36130 * 111.23788 * 0.94366 * 28 5 4 30 30 H 1.08997 * 109.46852 * 183.21642 * 1 2 3 31 31 H 1.08996 * 109.46355 * 303.21336 * 1 2 3 32 32 H 1.09000 * 109.46700 * 63.21106 * 1 2 3 33 33 H 1.08998 * 110.94105 * 98.02322 * 4 2 1 34 34 H 1.09002 * 110.97119 * 334.35998 * 4 2 1 35 35 H 1.07997 * 120.01199 * 359.46453 * 6 5 4 36 36 H 0.97005 * 120.00079 * 175.93672 * 15 14 12 37 37 H 1.08000 * 120.45790 * 359.97282 * 21 20 11 38 38 H 1.07998 * 120.74466 * 180.22187 * 22 21 20 39 39 H 1.08005 * 120.33184 * 179.70884 * 23 22 21 40 40 H 1.07991 * 119.57008 * 179.97438 * 24 23 22 41 41 H 1.07998 * 119.82470 * 179.90296 * 26 7 6 42 42 H 1.07991 * 119.87993 * 180.27687 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0781 -0.7925 -1.2104 5 6 3.3089 -1.4535 -0.6207 6 6 4.4002 -2.0612 -1.2014 7 6 5.4057 -2.5820 -0.4065 8 16 6.8017 -3.3630 -1.1455 9 8 6.3843 -3.7966 -2.4327 10 8 7.3357 -4.2416 -0.1646 11 7 7.9444 -2.1905 -1.3947 12 6 8.8680 -1.9169 -0.4218 13 1 8.5495 -1.7732 0.6001 14 6 10.2139 -1.8244 -0.7488 15 7 10.6415 -2.2748 -1.9087 16 14 11.4179 -1.0602 0.4577 17 1 12.7833 -1.0801 -0.1259 18 1 11.0184 0.3431 0.7338 19 1 11.4090 -1.8358 1.7240 20 6 7.9656 -1.4850 -2.5902 21 6 8.8342 -0.4072 -2.7400 22 6 8.8485 0.2834 -3.9383 23 6 7.9834 -0.1209 -4.9467 24 6 7.1443 -1.1961 -4.7279 25 7 7.1553 -1.8397 -3.5766 26 6 5.3085 -2.4926 0.9700 27 6 4.2184 -1.8812 1.5535 28 6 3.1996 -1.3584 0.7606 29 8 2.0431 -0.7380 1.1222 30 1 -0.3633 -1.0260 0.0577 31 1 -0.3632 0.5629 0.8598 32 1 -0.3633 0.4632 -0.9174 33 1 2.3490 -0.1211 -2.0252 34 1 1.3583 -1.5388 -1.5464 35 1 4.4709 -2.1310 -2.2768 36 1 11.5705 -2.1573 -2.1621 37 1 9.4905 -0.1167 -1.9329 38 1 9.5140 1.1213 -4.0848 39 1 7.9665 0.4003 -5.8925 40 1 6.4698 -1.5134 -5.5093 41 1 6.0921 -2.9002 1.5914 42 1 4.1524 -1.8117 2.6291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585129856.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:57 Heat of formation + Delta-G solvation = -16.769827 kcal Electronic energy + Delta-G solvation = -30539.252559 eV Core-core repulsion = 26384.820464 eV Total energy + Delta-G solvation = -4154.432095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.098 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.21126 -39.24821 -37.48205 -36.10790 -35.61316 -34.64844 -33.31447 -32.22988 -31.20286 -31.02546 -30.12626 -28.92605 -26.72789 -25.11300 -22.93814 -22.51259 -21.87751 -21.82940 -21.80272 -18.65752 -18.19469 -17.61534 -17.35948 -16.77473 -16.37422 -15.61480 -15.53034 -15.04699 -14.74596 -14.42066 -14.16843 -13.96676 -13.80865 -13.61826 -13.31936 -13.21684 -13.20597 -12.96748 -12.63198 -12.56744 -12.29299 -12.18733 -12.00402 -11.59348 -11.50338 -11.39762 -11.05422 -10.96292 -10.91760 -10.82274 -10.71090 -10.65240 -10.50787 -10.18114 -9.69643 -8.90482 -8.83309 -8.81384 -8.36504 -8.24616 -7.18646 -6.50051 -4.48387 1.01043 1.41616 1.45764 2.30068 2.35217 3.03489 3.08773 3.13951 3.15390 3.53284 3.93661 4.19868 4.29306 4.34157 4.59621 4.69758 4.74583 4.84513 4.94089 5.09264 5.12696 5.24853 5.34631 5.37760 5.41150 5.49341 5.63725 5.67023 5.71825 5.77250 5.79767 5.98285 6.02819 6.09080 6.17992 6.30845 6.35845 6.44432 6.61864 6.73329 6.86720 7.14375 7.17663 7.20099 7.37419 7.74575 8.25681 8.49549 8.85414 9.22776 10.43770 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.011341 B = 0.004089 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.292925 B = 6845.674259 C = 7735.913702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.074 3.926 3 H 0.088 0.912 4 C -0.103 4.103 5 C -0.204 4.204 6 C 0.036 3.964 7 C -0.687 4.687 8 S 2.646 3.354 9 O -0.941 6.941 10 O -0.960 6.960 11 N -0.753 5.753 12 C -0.329 4.329 13 H 0.103 0.897 14 C 0.055 3.945 15 N -0.830 5.830 16 Si 0.917 3.083 17 H -0.279 1.279 18 H -0.267 1.267 19 H -0.264 1.264 20 C 0.400 3.600 21 C -0.151 4.151 22 C -0.071 4.071 23 C -0.243 4.243 24 C 0.121 3.879 25 N -0.520 5.520 26 C 0.015 3.985 27 C -0.163 4.163 28 C 0.147 3.853 29 O -0.302 6.302 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.145 0.855 36 H 0.277 0.723 37 H 0.136 0.864 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.142 0.858 41 H 0.149 0.851 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.489 7.779 0.899 14.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.019 3.981 3 H 0.106 0.894 4 C -0.140 4.140 5 C -0.206 4.206 6 C 0.017 3.983 7 C -0.770 4.770 8 S 2.742 3.258 9 O -0.931 6.931 10 O -0.950 6.950 11 N -0.567 5.567 12 C -0.463 4.463 13 H 0.120 0.880 14 C -0.158 4.158 15 N -0.462 5.462 16 Si 0.741 3.259 17 H -0.204 1.204 18 H -0.192 1.192 19 H -0.189 1.189 20 C 0.166 3.834 21 C -0.178 4.178 22 C -0.097 4.097 23 C -0.266 4.266 24 C -0.037 4.037 25 N -0.237 5.237 26 C -0.004 4.004 27 C -0.183 4.183 28 C 0.101 3.899 29 O -0.216 6.216 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.163 0.837 36 H 0.088 0.912 37 H 0.153 0.847 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.159 0.841 41 H 0.167 0.833 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.048 5.964 1.093 14.388 hybrid contribution 1.030 1.625 0.427 1.971 sum -12.018 7.589 1.520 14.295 Atomic orbital electron populations 1.21878 0.91994 1.03536 1.03126 1.23437 0.95734 0.95545 0.83433 0.89374 1.21842 0.94542 0.99312 0.98318 1.20786 0.98517 1.07340 0.93928 1.20110 0.89095 0.88770 1.00356 1.31387 1.21272 1.20465 1.03909 1.04472 0.73354 0.74306 0.73637 1.93556 1.82435 1.79206 1.37866 1.93477 1.77730 1.61050 1.62742 1.50693 1.41173 1.46063 1.18736 1.19089 0.86062 1.51454 0.89659 0.87960 1.25610 0.97893 0.95280 0.97021 1.70076 1.17594 1.37087 1.21430 0.86153 0.79038 0.79934 0.80736 1.20394 1.19169 1.18865 1.18457 0.90779 0.87647 0.86470 1.21547 1.01284 0.96267 0.98682 1.21203 0.96978 0.98385 0.93169 1.21600 1.02323 1.02339 1.00331 1.22140 0.96613 0.91634 0.93344 1.67529 1.25149 1.29925 1.01100 1.20743 0.95776 0.90739 0.93098 1.20319 0.92929 1.05131 0.99873 1.19758 0.85785 0.91252 0.93071 1.86829 1.34424 1.62252 1.38073 0.91357 0.91353 0.90158 0.88820 0.89031 0.83750 0.91229 0.84652 0.86630 0.86783 0.84114 0.83322 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.59 37.16 0.36 -0.75 16 2 C 0.07 0.78 4.25 -25.83 -0.11 0.67 16 3 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.10 -1.17 6.64 -26.52 -0.18 -1.35 16 5 C -0.20 -3.20 6.27 -104.10 -0.65 -3.85 16 6 C 0.04 0.65 9.51 -39.72 -0.38 0.27 16 7 C -0.69 -13.61 5.98 -39.52 -0.24 -13.85 16 8 S 2.65 62.87 5.56 -107.50 -0.60 62.27 16 9 O -0.94 -23.77 14.65 -57.17 -0.84 -24.61 16 10 O -0.96 -24.66 16.50 -57.17 -0.94 -25.60 16 11 N -0.75 -18.70 2.94 -11.15 -0.03 -18.74 16 12 C -0.33 -8.15 8.19 -15.07 -0.12 -8.28 16 13 H 0.10 2.35 7.87 -52.48 -0.41 1.94 16 14 C 0.05 1.34 3.29 -17.45 -0.06 1.28 16 15 N -0.83 -21.60 11.61 55.49 0.64 -20.96 16 16 Si 0.92 18.54 29.57 -169.99 -5.03 13.51 16 17 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 18 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 C 0.40 9.67 6.64 -155.07 -1.03 8.64 16 21 C -0.15 -3.38 7.75 -39.19 -0.30 -3.68 16 22 C -0.07 -1.34 10.17 -39.31 -0.40 -1.74 16 23 C -0.24 -4.27 10.11 -39.38 -0.40 -4.67 16 24 C 0.12 2.35 11.18 -17.56 -0.20 2.15 16 25 N -0.52 -12.05 7.60 -12.43 -0.09 -12.14 16 26 C 0.02 0.27 9.50 -39.68 -0.38 -0.10 16 27 C -0.16 -2.55 10.06 -39.30 -0.40 -2.95 16 28 C 0.15 2.31 7.04 -38.95 -0.27 2.03 16 29 O -0.30 -4.19 10.82 -20.16 -0.22 -4.41 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 0.92 7.93 -51.93 -0.41 0.51 16 35 H 0.14 2.60 7.63 -52.49 -0.40 2.20 16 36 H 0.28 6.75 8.32 -40.82 -0.34 6.41 16 37 H 0.14 3.08 5.61 -52.49 -0.29 2.78 16 38 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 39 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 40 H 0.14 2.24 8.06 -52.49 -0.42 1.82 16 41 H 0.15 2.48 7.61 -52.49 -0.40 2.08 16 42 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 364.65 15.07 5.50 5.50 Total: -1.00 -32.32 364.65 -11.22 -43.54 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -4.86 Total: 7.81 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: -4.75 Total: -26.17 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.52 Total: -51.83 kcal Atomic # 8 Polarization: -52.62 SS G_CDS: -2.00 Total: -54.62 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Atomic # 16 Polarization: 62.87 SS G_CDS: -0.60 Total: 62.27 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.32 -11.22 -43.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585129856.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.770 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds