Wall clock time and date at job start Tue Mar 31 2020 06:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.66644 * 2 1 4 4 C 1.54707 * 110.74868 * 123.41641 * 2 1 3 5 5 C 1.51652 * 101.94381 * 143.55206 * 4 2 1 6 6 C 1.37741 * 132.17334 * 164.39125 * 5 4 2 7 7 C 1.38351 * 119.97888 * 180.90431 * 6 5 4 8 8 S 1.76197 * 120.11594 * 179.72269 * 7 6 5 9 9 O 1.42103 * 106.39854 * 203.54017 * 8 7 6 10 10 O 1.42099 * 106.40110 * 336.45488 * 8 7 6 11 11 N 1.65596 * 107.21871 * 89.99711 * 8 7 6 12 12 C 1.36912 * 120.00336 * 263.70105 * 11 8 7 13 13 H 1.07997 * 120.00157 * 308.31735 * 12 11 8 14 14 C 1.38819 * 120.00032 * 128.30506 * 12 11 8 15 15 N 1.31567 * 119.99771 * 344.70040 * 14 12 11 16 16 Si 1.86797 * 119.99922 * 164.70270 * 14 12 11 17 17 H 1.48497 * 109.47007 * 90.00033 * 16 14 12 18 18 H 1.48503 * 109.47012 * 209.99926 * 16 14 12 19 19 H 1.48496 * 109.47177 * 329.99766 * 16 14 12 20 20 C 1.38839 * 119.99797 * 83.70421 * 11 8 7 21 21 C 1.39230 * 119.70826 * 179.72333 * 20 11 8 22 22 C 1.38316 * 119.08495 * 179.79193 * 21 20 11 23 23 C 1.38879 * 118.50700 * 0.48043 * 22 21 20 24 24 C 1.38124 * 119.34089 * 359.74078 * 23 22 21 25 25 N 1.31889 * 120.86597 * 0.02798 * 24 23 22 26 26 C 1.38286 * 119.76711 * 359.97438 * 7 6 5 27 27 C 1.37932 * 120.35093 * 359.81087 * 26 7 6 28 28 C 1.38881 * 107.04205 * 344.85948 * 5 4 2 29 29 O 1.36147 * 111.22001 * 358.56544 * 28 5 4 30 30 H 1.09006 * 109.47079 * 181.77397 * 1 2 3 31 31 H 1.09002 * 109.47396 * 301.76906 * 1 2 3 32 32 H 1.08993 * 109.47173 * 61.77306 * 1 2 3 33 33 H 1.08993 * 110.93919 * 25.38973 * 4 2 1 34 34 H 1.09005 * 110.93818 * 261.70867 * 4 2 1 35 35 H 1.07995 * 120.01054 * 0.87685 * 6 5 4 36 36 H 0.97005 * 119.99716 * 180.02562 * 15 14 12 37 37 H 1.07995 * 120.45573 * 0.02562 * 21 20 11 38 38 H 1.08002 * 120.73753 * 180.22012 * 22 21 20 39 39 H 1.08001 * 120.32682 * 179.72994 * 23 22 21 40 40 H 1.08000 * 119.56286 * 180.02562 * 24 23 22 41 41 H 1.08000 * 119.82672 * 179.79292 * 26 7 6 42 42 H 1.08007 * 119.88219 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0781 -0.7967 1.2076 5 6 3.3053 -1.4613 0.6142 6 6 4.3940 -2.0766 1.1916 7 6 5.4000 -2.5925 0.3941 8 16 6.7978 -3.3739 1.1291 9 8 7.8504 -3.2902 0.1781 10 8 6.8994 -2.8559 2.4484 11 7 6.4348 -4.9820 1.2848 12 6 5.9532 -5.4633 2.4726 13 1 6.4782 -5.2537 3.3928 14 6 4.7900 -6.2206 2.4942 15 7 3.9910 -6.2289 1.4490 16 14 4.3591 -7.2276 4.0073 17 1 3.5441 -6.4029 4.9352 18 1 3.5835 -8.4266 3.5996 19 1 5.6070 -7.6539 4.6901 20 6 6.6189 -5.8423 0.2107 21 6 6.3172 -7.1944 0.3500 22 6 6.5013 -8.0391 -0.7296 23 6 6.9921 -7.5042 -1.9135 24 6 7.2749 -6.1539 -1.9802 25 7 7.0853 -5.3706 -0.9362 26 6 5.3072 -2.4879 -0.9817 27 6 4.2158 -1.8760 -1.5621 28 6 3.1973 -1.3568 -0.7665 29 8 2.0394 -0.7367 -1.1246 30 1 -0.3633 -1.0272 0.0318 31 1 -0.3634 0.5411 0.8737 32 1 -0.3633 0.4860 -0.9054 33 1 1.3561 -1.5411 1.5432 34 1 2.3534 -0.1278 2.0230 35 1 4.4625 -2.1561 2.2664 36 1 3.1779 -6.7578 1.4642 37 1 5.9410 -7.5776 1.2870 38 1 6.2726 -9.0918 -0.6522 39 1 7.1513 -8.1379 -2.7735 40 1 7.6564 -5.7341 -2.8992 41 1 6.0936 -2.8873 -1.6050 42 1 4.1509 -1.7989 -2.6375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585129857.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:03 Heat of formation + Delta-G solvation = -22.894591 kcal Electronic energy + Delta-G solvation = -30789.698454 eV Core-core repulsion = 26635.000770 eV Total energy + Delta-G solvation = -4154.697685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.098 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.96786 -39.34104 -37.19270 -36.05324 -35.67171 -34.58913 -33.10499 -32.37341 -31.14639 -30.95488 -29.84089 -28.99705 -26.50056 -25.20692 -22.69430 -22.54537 -21.94520 -21.64598 -21.53618 -18.66504 -18.17352 -17.40684 -17.21981 -16.62231 -16.17462 -15.76025 -15.33916 -15.16892 -14.76629 -14.34827 -14.03573 -13.91688 -13.69473 -13.48482 -13.31453 -13.25880 -12.98529 -12.76507 -12.46369 -12.33753 -12.28040 -12.13360 -12.03094 -11.69812 -11.47415 -11.32274 -10.97377 -10.88067 -10.81285 -10.77460 -10.69788 -10.56840 -10.50060 -9.98131 -9.67661 -9.01203 -8.87678 -8.53510 -8.42102 -8.06459 -7.24072 -6.67124 -4.63200 1.28356 1.64272 1.72871 2.26701 2.29070 2.98266 3.06201 3.11745 3.25560 3.73907 3.90018 4.18017 4.50414 4.51877 4.52764 4.74091 4.85263 5.03183 5.03750 5.17654 5.28674 5.33025 5.41944 5.55602 5.60016 5.63507 5.76095 5.80369 5.90734 5.91664 5.94518 5.99549 6.04196 6.22171 6.31929 6.44406 6.62912 6.68358 6.73432 6.81203 6.90525 7.09474 7.12385 7.29499 7.42017 7.69535 8.19303 8.37458 8.72411 9.14168 10.23208 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.009966 B = 0.004577 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.016915 B = 6116.044629 C = 7016.154000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.075 3.925 3 H 0.085 0.915 4 C -0.102 4.102 5 C -0.204 4.204 6 C 0.038 3.962 7 C -0.673 4.673 8 S 2.609 3.391 9 O -0.957 6.957 10 O -0.973 6.973 11 N -0.739 5.739 12 C -0.314 4.314 13 H 0.113 0.887 14 C 0.054 3.946 15 N -0.816 5.816 16 Si 0.917 3.083 17 H -0.268 1.268 18 H -0.276 1.276 19 H -0.259 1.259 20 C 0.405 3.595 21 C -0.151 4.151 22 C -0.071 4.071 23 C -0.237 4.237 24 C 0.124 3.876 25 N -0.525 5.525 26 C 0.021 3.979 27 C -0.167 4.167 28 C 0.141 3.859 29 O -0.304 6.304 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.136 0.864 36 H 0.279 0.721 37 H 0.140 0.860 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.144 0.856 41 H 0.149 0.851 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.315 3.609 -2.921 7.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.019 3.981 3 H 0.103 0.897 4 C -0.139 4.139 5 C -0.206 4.206 6 C 0.019 3.981 7 C -0.756 4.756 8 S 2.709 3.291 9 O -0.947 6.947 10 O -0.964 6.964 11 N -0.549 5.549 12 C -0.454 4.454 13 H 0.130 0.870 14 C -0.161 4.161 15 N -0.448 5.448 16 Si 0.741 3.259 17 H -0.194 1.194 18 H -0.201 1.201 19 H -0.183 1.183 20 C 0.171 3.829 21 C -0.177 4.177 22 C -0.097 4.097 23 C -0.260 4.260 24 C -0.035 4.035 25 N -0.242 5.242 26 C 0.002 3.998 27 C -0.186 4.186 28 C 0.096 3.904 29 O -0.218 6.218 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.154 0.846 36 H 0.090 0.910 37 H 0.157 0.843 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.161 0.839 41 H 0.167 0.833 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.653 5.140 -2.999 7.554 hybrid contribution -1.571 -1.333 0.424 2.104 sum -6.225 3.807 -2.575 7.738 Atomic orbital electron populations 1.21877 0.92220 1.03513 1.02920 1.23391 0.95637 0.95350 0.83735 0.89669 1.21819 0.94935 0.99095 0.98061 1.20713 0.98307 1.07636 0.93894 1.19974 0.89159 0.89124 0.99841 1.31429 1.22963 1.17405 1.03770 1.06634 0.75341 0.74102 0.73006 1.93492 1.52883 1.85766 1.62537 1.93423 1.86532 1.78732 1.37677 1.50827 1.69628 1.20059 1.14431 1.19461 1.07292 1.33722 0.84919 0.86989 1.25860 0.94357 0.97704 0.98188 1.70084 1.10164 1.34866 1.29662 0.86073 0.79577 0.79256 0.81007 1.19360 1.20110 1.18259 1.18403 0.89411 0.88722 0.86342 1.21660 1.02745 0.92736 1.00570 1.21248 0.96456 0.99092 0.92899 1.21641 1.08559 0.96853 0.98968 1.22128 0.95888 0.90124 0.95314 1.67306 1.17638 1.39814 0.99464 1.20720 0.95450 0.90319 0.93298 1.20289 0.93125 1.05725 0.99459 1.19692 0.85757 0.91838 0.93141 1.86823 1.34620 1.62516 1.37872 0.91371 0.90342 0.91432 0.89125 0.89184 0.84612 0.91027 0.84279 0.86407 0.86533 0.83864 0.83336 0.85439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.60 37.16 0.36 -1.04 16 2 C 0.07 0.93 4.26 -25.83 -0.11 0.82 16 3 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.10 -1.41 6.65 -26.52 -0.18 -1.59 16 5 C -0.20 -3.76 6.27 -104.10 -0.65 -4.41 16 6 C 0.04 0.79 9.51 -39.72 -0.38 0.42 16 7 C -0.67 -14.94 5.98 -39.52 -0.24 -15.18 16 8 S 2.61 63.18 5.45 -107.50 -0.59 62.60 16 9 O -0.96 -24.10 15.04 -57.17 -0.86 -24.96 16 10 O -0.97 -24.82 16.37 -57.17 -0.94 -25.75 16 11 N -0.74 -18.22 2.90 -11.15 -0.03 -18.25 16 12 C -0.31 -7.64 8.18 -15.07 -0.12 -7.76 16 13 H 0.11 2.68 7.79 -52.49 -0.41 2.27 16 14 C 0.05 1.24 3.21 -17.45 -0.06 1.19 16 15 N -0.82 -19.53 11.75 55.49 0.65 -18.87 16 16 Si 0.92 17.66 29.53 -169.99 -5.02 12.64 16 17 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 18 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 19 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 20 C 0.40 9.63 6.78 -155.06 -1.05 8.58 16 21 C -0.15 -3.29 7.88 -39.18 -0.31 -3.60 16 22 C -0.07 -1.30 10.17 -39.32 -0.40 -1.70 16 23 C -0.24 -4.06 10.11 -39.39 -0.40 -4.46 16 24 C 0.12 2.33 11.17 -17.57 -0.20 2.13 16 25 N -0.53 -11.90 7.89 -12.43 -0.10 -12.00 16 26 C 0.02 0.44 9.50 -39.68 -0.38 0.06 16 27 C -0.17 -3.09 10.06 -39.30 -0.40 -3.48 16 28 C 0.14 2.60 7.03 -38.95 -0.27 2.32 16 29 O -0.30 -4.96 10.81 -20.21 -0.22 -5.18 16 30 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.09 1.20 7.90 -51.93 -0.41 0.79 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.14 2.76 7.63 -52.49 -0.40 2.36 16 36 H 0.28 6.28 8.31 -40.82 -0.34 5.94 16 37 H 0.14 3.07 5.30 -52.49 -0.28 2.80 16 38 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 40 H 0.14 2.20 8.06 -52.49 -0.42 1.77 16 41 H 0.15 2.98 7.61 -52.49 -0.40 2.58 16 42 H 0.13 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 364.86 15.07 5.50 5.50 Total: -1.00 -30.52 364.86 -11.21 -41.73 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -4.84 Total: 10.25 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -4.78 Total: -27.71 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.52 Total: -49.13 kcal Atomic # 8 Polarization: -53.88 SS G_CDS: -2.01 Total: -55.89 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.02 Total: 12.64 kcal Atomic # 16 Polarization: 63.18 SS G_CDS: -0.59 Total: 62.60 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.52 -11.21 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585129857.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.838 kcal (2) G-P(sol) polarization free energy of solvation -30.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds