Wall clock time and date at job start Tue Mar 31 2020 05:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.74821 * 2 1 4 4 C 1.53374 * 109.61117 * 239.57105 * 2 1 3 5 5 N 1.46967 * 108.63592 * 190.82907 * 4 2 1 6 6 C 1.34766 * 120.59531 * 235.20489 * 5 4 2 7 7 O 1.21595 * 119.99978 * 185.27210 * 6 5 4 8 8 N 1.34775 * 120.00328 * 5.26958 * 6 5 4 9 9 C 1.46496 * 120.00116 * 174.71660 * 8 6 5 10 10 H 1.08997 * 109.70071 * 35.56236 * 9 8 6 11 11 C 1.53412 * 109.70163 * 274.99833 * 9 8 6 12 12 O 1.42825 * 108.37654 * 175.58035 * 11 9 8 13 13 C 1.35854 * 117.86276 * 49.18590 * 12 11 9 14 14 C 1.39141 * 118.50564 * 162.82351 * 13 12 11 15 15 C 1.37971 * 120.21782 * 179.79717 * 14 13 12 16 16 C 1.38287 * 119.95637 * 0.02562 * 15 14 13 17 17 C 1.38104 * 119.98294 * 0.07196 * 16 15 14 18 18 C 1.38375 * 121.80058 * 342.76261 * 13 12 11 19 19 C 1.50769 * 121.40571 * 0.52738 * 18 13 12 20 20 C 1.46964 * 118.80693 * 55.47910 * 5 4 2 21 21 C 1.53810 * 108.40151 * 304.48184 * 20 5 4 22 22 H 1.09001 * 109.53383 * 169.30530 * 21 20 5 23 23 C 1.53003 * 109.74126 * 289.85033 * 21 20 5 24 24 N 1.46962 * 109.61179 * 120.42573 * 2 1 3 25 25 C 1.36945 * 120.59082 * 354.94959 * 24 2 1 26 26 H 1.07997 * 119.99662 * 123.60485 * 25 24 2 27 27 C 1.38805 * 119.99992 * 303.60037 * 25 24 2 28 28 N 1.31620 * 120.00050 * 156.02066 * 27 25 24 29 29 Si 1.86803 * 120.00129 * 336.02199 * 27 25 24 30 30 H 1.48497 * 109.47376 * 93.69130 * 29 27 25 31 31 H 1.48507 * 109.46933 * 213.69443 * 29 27 25 32 32 H 1.48496 * 109.47021 * 333.68873 * 29 27 25 33 33 H 1.09001 * 109.46942 * 181.55988 * 1 2 3 34 34 H 1.08996 * 109.47705 * 301.56527 * 1 2 3 35 35 H 1.09006 * 109.47246 * 61.56764 * 1 2 3 36 36 H 1.09001 * 109.60878 * 71.08658 * 4 2 1 37 37 H 1.08998 * 109.75037 * 310.65799 * 4 2 1 38 38 H 0.97003 * 119.99676 * 354.99879 * 8 6 5 39 39 H 1.08997 * 109.68265 * 295.30511 * 11 9 8 40 40 H 1.09000 * 109.67803 * 55.86803 * 11 9 8 41 41 H 1.08002 * 119.89444 * 359.82357 * 14 13 12 42 42 H 1.07994 * 120.02050 * 180.02562 * 15 14 13 43 43 H 1.08005 * 120.00945 * 180.09851 * 16 15 14 44 44 H 1.08001 * 119.84291 * 180.02562 * 17 16 15 45 45 H 1.08998 * 109.43546 * 222.07580 * 19 18 13 46 46 H 1.08999 * 109.44282 * 102.19830 * 19 18 13 47 47 H 1.08995 * 109.61061 * 64.26604 * 20 5 4 48 48 H 1.08999 * 109.60722 * 184.77837 * 20 5 4 49 49 H 1.09001 * 109.46829 * 179.15422 * 23 21 20 50 50 H 1.08999 * 109.47072 * 299.15298 * 23 21 20 51 51 H 1.09001 * 109.47233 * 59.15988 * 23 21 20 52 52 H 0.97007 * 120.00210 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0447 -0.7317 -1.2458 5 7 3.4908 -0.9489 -1.0989 6 6 4.3491 -0.5133 -2.0421 7 8 5.5321 -0.7818 -1.9583 8 7 3.8964 0.2198 -3.0785 9 6 4.8423 0.7907 -4.0405 10 1 5.6749 0.1032 -4.1893 11 6 5.3675 2.1329 -3.5151 12 8 6.3614 2.6134 -4.4213 13 6 6.0594 2.6273 -5.7458 14 6 6.8372 3.4070 -6.5961 15 6 6.5644 3.4440 -7.9480 16 6 5.5145 2.7046 -8.4611 17 6 4.7390 1.9312 -7.6198 18 6 5.0079 1.8905 -6.2617 19 6 4.1339 1.0409 -5.3743 20 6 3.9835 -1.6549 0.0922 21 6 3.4692 -0.9183 1.3407 22 1 3.6600 -1.5247 2.2261 23 6 4.1800 0.4300 1.4746 24 7 2.0232 -0.7011 1.1937 25 6 1.1510 -1.1436 2.1522 26 1 1.1392 -2.1869 2.4313 27 6 0.2821 -0.2514 2.7651 28 7 -0.8364 -0.6875 3.3047 29 14 0.7002 1.5683 2.8241 30 1 0.0730 2.2581 1.6682 31 1 0.1860 2.1536 4.0884 32 1 2.1739 1.7398 2.7628 33 1 -0.3633 -1.0273 0.0280 34 1 -0.3634 0.5379 0.8755 35 1 -0.3634 0.4893 -0.9037 36 1 1.8540 -0.1253 -2.1312 37 1 1.5387 -1.6921 -1.3442 38 1 2.9445 0.3728 -3.1850 39 1 4.5484 2.8494 -3.4548 40 1 5.8077 1.9936 -2.5277 41 1 7.6575 3.9849 -6.1966 42 1 7.1705 4.0499 -8.6052 43 1 5.3011 2.7317 -9.5195 44 1 3.9198 1.3543 -8.0229 45 1 3.9369 0.0876 -5.8647 46 1 3.1909 1.5565 -5.1930 47 1 3.6120 -2.6796 0.0898 48 1 5.0735 -1.6583 0.0906 49 1 3.8016 0.9546 2.3520 50 1 5.2521 0.2663 1.5835 51 1 3.9926 1.0297 0.5839 52 1 -1.4435 -0.0640 3.7333 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585137487.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:09 Heat of formation + Delta-G solvation = 1.870675 kcal Electronic energy + Delta-G solvation = -33586.160873 eV Core-core repulsion = 29359.169071 eV Total energy + Delta-G solvation = -4226.991802 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.12890 -40.08114 -38.01670 -37.53641 -35.65772 -34.22169 -33.26600 -32.38228 -31.65865 -30.58590 -29.66982 -28.36040 -26.40191 -26.09397 -25.74546 -23.72968 -23.28499 -22.72741 -21.35303 -20.48096 -20.24398 -18.66947 -18.12487 -18.08531 -17.08864 -16.51670 -16.26901 -15.85173 -15.55072 -15.09404 -15.02383 -14.76454 -14.69574 -14.23171 -14.09351 -13.97964 -13.64420 -13.56339 -13.42865 -13.22669 -13.20496 -12.79162 -12.45490 -12.27895 -12.12462 -11.85677 -11.68697 -11.63612 -11.55944 -11.36294 -11.12532 -11.05335 -10.91654 -10.63893 -10.61102 -10.31180 -10.09982 -9.92177 -9.69019 -9.64155 -9.22476 -9.10624 -8.58823 -8.41585 -8.16510 -6.51742 -6.14235 -3.74176 0.99467 1.13782 2.62387 3.13404 3.24992 3.33464 3.40232 3.46129 3.47238 3.94531 4.25519 4.36539 4.41791 4.53430 4.56854 4.77763 4.80230 4.84340 5.03573 5.12124 5.13244 5.19568 5.29365 5.39451 5.42305 5.52046 5.55192 5.61937 5.68843 5.73217 5.79553 5.92977 5.98872 6.00505 6.13820 6.15673 6.18575 6.21745 6.26295 6.34836 6.35279 6.44794 6.51761 6.53926 6.64145 6.79153 6.87838 7.02109 7.16910 7.21264 7.28110 7.98275 8.09306 8.46339 8.73576 8.92525 9.56253 10.13325 10.97338 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.018255 B = 0.002457 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.465804 B =11391.737809 C =11621.800107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.154 3.846 3 H 0.028 0.972 4 C 0.101 3.899 5 N -0.612 5.612 6 C 0.706 3.294 7 O -0.596 6.596 8 N -0.744 5.744 9 C 0.133 3.867 10 H 0.103 0.897 11 C 0.052 3.948 12 O -0.309 6.309 13 C 0.133 3.867 14 C -0.149 4.149 15 C -0.088 4.088 16 C -0.155 4.155 17 C -0.082 4.082 18 C -0.156 4.156 19 C -0.085 4.085 20 C 0.119 3.881 21 C 0.150 3.850 22 H 0.083 0.917 23 C -0.162 4.162 24 N -0.590 5.590 25 C -0.281 4.281 26 H 0.069 0.931 27 C 0.064 3.936 28 N -0.885 5.885 29 Si 0.862 3.138 30 H -0.283 1.283 31 H -0.301 1.301 32 H -0.257 1.257 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.033 0.967 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.398 0.602 39 H 0.066 0.934 40 H 0.113 0.887 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.063 0.937 48 H 0.085 0.915 49 H 0.059 0.941 50 H 0.043 0.957 51 H 0.040 0.960 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.944 6.230 -20.669 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.048 3.952 3 H 0.046 0.954 4 C -0.024 4.024 5 N -0.348 5.348 6 C 0.408 3.592 7 O -0.475 6.475 8 N -0.403 5.403 9 C 0.026 3.974 10 H 0.121 0.879 11 C -0.025 4.025 12 O -0.221 6.221 13 C 0.088 3.912 14 C -0.168 4.168 15 C -0.106 4.106 16 C -0.173 4.173 17 C -0.100 4.100 18 C -0.158 4.158 19 C -0.122 4.122 20 C -0.005 4.005 21 C 0.043 3.957 22 H 0.101 0.899 23 C -0.221 4.221 24 N -0.314 5.314 25 C -0.410 4.410 26 H 0.087 0.913 27 C -0.140 4.140 28 N -0.523 5.523 29 Si 0.690 3.310 30 H -0.210 1.210 31 H -0.229 1.229 32 H -0.181 1.181 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.235 0.765 39 H 0.084 0.916 40 H 0.131 0.869 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.108 0.892 46 H 0.102 0.898 47 H 0.082 0.918 48 H 0.103 0.897 49 H 0.077 0.923 50 H 0.062 0.938 51 H 0.059 0.941 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.804 6.095 -20.351 23.397 hybrid contribution -0.726 1.177 0.055 1.384 sum 9.078 7.272 -20.296 23.392 Atomic orbital electron populations 1.21991 0.94163 1.03335 1.00399 1.20976 0.94149 0.93699 0.86411 0.95390 1.22337 0.80127 1.01089 0.98866 1.47168 1.06327 1.59833 1.21430 1.15829 0.85051 0.78656 0.79677 1.90891 1.15062 1.63388 1.78147 1.45182 1.09889 1.56960 1.28312 1.21272 0.93492 0.95025 0.87591 0.87903 1.23485 0.91497 0.94690 0.92804 1.86064 1.41753 1.80683 1.13646 1.18811 0.94354 0.94378 0.83698 1.20622 1.02072 1.01095 0.93005 1.20943 0.97090 0.98352 0.94194 1.21012 0.97059 0.99373 0.99851 1.20889 0.99044 0.98204 0.91856 1.19695 0.99138 1.01652 0.95274 1.20747 0.97915 1.00052 0.93502 1.22210 0.99491 0.94947 0.83852 1.21249 0.85226 0.94193 0.95069 0.89879 1.22297 0.98761 0.99657 1.01391 1.44255 1.00285 1.67921 1.18950 1.18444 1.14097 0.93257 1.15165 0.91326 1.25918 0.95584 0.97792 0.94701 1.69929 1.08723 1.35586 1.38083 0.87310 0.80159 0.87165 0.76372 1.21008 1.22859 1.18146 0.91193 0.90838 0.94802 0.92135 0.90961 0.76463 0.91583 0.86853 0.85170 0.85443 0.85853 0.85716 0.89174 0.89791 0.91842 0.89707 0.92251 0.93836 0.94052 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 7.87 37.15 0.29 -2.47 16 2 C 0.15 2.93 2.10 -67.49 -0.14 2.78 16 3 H 0.03 0.56 7.04 -51.93 -0.37 0.20 16 4 C 0.10 1.55 5.90 -3.59 -0.02 1.53 16 5 N -0.61 -9.96 2.58 -177.94 -0.46 -10.42 16 6 C 0.71 11.35 8.27 -86.93 -0.72 10.63 16 7 O -0.60 -11.44 15.41 5.28 0.08 -11.36 16 8 N -0.74 -9.11 5.01 -58.43 -0.29 -9.40 16 9 C 0.13 1.52 2.72 -67.68 -0.18 1.33 16 10 H 0.10 1.41 7.54 -51.93 -0.39 1.02 16 11 C 0.05 0.61 6.62 37.37 0.25 0.86 16 12 O -0.31 -3.91 10.27 -19.28 -0.20 -4.10 16 13 C 0.13 1.51 6.47 -39.20 -0.25 1.25 16 14 C -0.15 -1.46 9.94 -39.34 -0.39 -1.85 16 15 C -0.09 -0.70 10.04 -39.66 -0.40 -1.10 16 16 C -0.15 -1.20 10.04 -39.61 -0.40 -1.59 16 17 C -0.08 -0.68 9.67 -39.53 -0.38 -1.07 16 18 C -0.16 -1.55 5.75 -104.44 -0.60 -2.15 16 19 C -0.08 -0.75 5.36 -27.81 -0.15 -0.90 16 20 C 0.12 2.05 5.99 -3.37 -0.02 2.03 16 21 C 0.15 2.85 3.32 -67.26 -0.22 2.63 16 22 H 0.08 1.61 7.93 -51.93 -0.41 1.20 16 23 C -0.16 -3.01 9.12 37.16 0.34 -2.67 16 24 N -0.59 -12.62 1.83 -156.77 -0.29 -12.91 16 25 C -0.28 -7.12 8.67 -15.06 -0.13 -7.25 16 26 H 0.07 1.93 8.06 -52.49 -0.42 1.51 16 27 C 0.06 1.67 3.76 -17.43 -0.07 1.61 16 28 N -0.89 -24.81 13.97 55.49 0.78 -24.04 16 29 Si 0.86 20.58 25.27 -169.99 -4.30 16.28 16 30 H -0.28 -6.59 6.62 56.52 0.37 -6.22 16 31 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 32 H -0.26 -6.03 5.03 56.52 0.28 -5.75 16 33 H 0.07 1.45 7.83 -51.93 -0.41 1.04 16 34 H 0.07 1.66 3.34 -51.93 -0.17 1.49 16 35 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.73 5.55 -51.93 -0.29 0.44 16 37 H 0.07 1.14 8.12 -51.93 -0.42 0.71 16 38 H 0.40 4.08 6.02 -40.82 -0.25 3.83 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 44 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 45 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.08 1.46 7.00 -51.93 -0.36 1.10 16 49 H 0.06 1.20 6.09 -51.93 -0.32 0.89 16 50 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 51 H 0.04 0.78 7.02 -51.93 -0.36 0.41 16 52 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 393.75 15.07 5.93 5.93 Total: -1.00 -30.27 393.75 -10.04 -40.31 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -8.10 Total: 6.11 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -3.20 Total: 3.59 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.27 Total: -56.76 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.12 Total: -15.47 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.30 Total: 16.28 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.27 -10.04 -40.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585137487.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.180 kcal (2) G-P(sol) polarization free energy of solvation -30.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds