Wall clock time and date at job start Tue Mar 31 2020 05:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.74821 * 2 1 4 4 C 1.53374 * 109.61117 * 239.57105 * 2 1 3 5 5 N 1.46967 * 108.63592 * 190.82907 * 4 2 1 6 6 C 1.34766 * 120.59531 * 235.20489 * 5 4 2 7 7 O 1.21595 * 119.99978 * 185.27210 * 6 5 4 8 8 N 1.34775 * 120.00328 * 5.26958 * 6 5 4 9 9 C 1.46496 * 120.00116 * 174.71660 * 8 6 5 10 10 H 1.08997 * 109.70071 * 35.56236 * 9 8 6 11 11 C 1.53412 * 109.70163 * 274.99833 * 9 8 6 12 12 O 1.42825 * 108.37654 * 175.58035 * 11 9 8 13 13 C 1.35854 * 117.86276 * 49.18590 * 12 11 9 14 14 C 1.39141 * 118.50564 * 162.82351 * 13 12 11 15 15 C 1.37971 * 120.21782 * 179.79717 * 14 13 12 16 16 C 1.38287 * 119.95637 * 0.02562 * 15 14 13 17 17 C 1.38104 * 119.98294 * 0.07196 * 16 15 14 18 18 C 1.38375 * 121.80058 * 342.76261 * 13 12 11 19 19 C 1.50769 * 121.40571 * 0.52738 * 18 13 12 20 20 C 1.46964 * 118.80693 * 55.47910 * 5 4 2 21 21 C 1.53810 * 108.40151 * 304.48184 * 20 5 4 22 22 H 1.09001 * 109.53383 * 169.30530 * 21 20 5 23 23 C 1.53003 * 109.74126 * 289.85033 * 21 20 5 24 24 N 1.46962 * 109.61179 * 120.42573 * 2 1 3 25 25 C 1.36945 * 120.59082 * 354.94959 * 24 2 1 26 26 H 1.07997 * 119.99662 * 123.60485 * 25 24 2 27 27 C 1.38805 * 119.99992 * 303.60037 * 25 24 2 28 28 N 1.31620 * 120.00050 * 156.02066 * 27 25 24 29 29 Si 1.86803 * 120.00129 * 336.02199 * 27 25 24 30 30 H 1.48497 * 109.47376 * 93.69130 * 29 27 25 31 31 H 1.48507 * 109.46933 * 213.69443 * 29 27 25 32 32 H 1.48496 * 109.47021 * 333.68873 * 29 27 25 33 33 H 1.09001 * 109.46942 * 181.55988 * 1 2 3 34 34 H 1.08996 * 109.47705 * 301.56527 * 1 2 3 35 35 H 1.09006 * 109.47246 * 61.56764 * 1 2 3 36 36 H 1.09001 * 109.60878 * 71.08658 * 4 2 1 37 37 H 1.08998 * 109.75037 * 310.65799 * 4 2 1 38 38 H 0.97003 * 119.99676 * 354.99879 * 8 6 5 39 39 H 1.08997 * 109.68265 * 295.30511 * 11 9 8 40 40 H 1.09000 * 109.67803 * 55.86803 * 11 9 8 41 41 H 1.08002 * 119.89444 * 359.82357 * 14 13 12 42 42 H 1.07994 * 120.02050 * 180.02562 * 15 14 13 43 43 H 1.08005 * 120.00945 * 180.09851 * 16 15 14 44 44 H 1.08001 * 119.84291 * 180.02562 * 17 16 15 45 45 H 1.08998 * 109.43546 * 222.07580 * 19 18 13 46 46 H 1.08999 * 109.44282 * 102.19830 * 19 18 13 47 47 H 1.08995 * 109.61061 * 64.26604 * 20 5 4 48 48 H 1.08999 * 109.60722 * 184.77837 * 20 5 4 49 49 H 1.09001 * 109.46829 * 179.15422 * 23 21 20 50 50 H 1.08999 * 109.47072 * 299.15298 * 23 21 20 51 51 H 1.09001 * 109.47233 * 59.15988 * 23 21 20 52 52 H 0.97007 * 120.00210 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0447 -0.7317 -1.2458 5 7 3.4908 -0.9489 -1.0989 6 6 4.3491 -0.5133 -2.0421 7 8 5.5321 -0.7818 -1.9583 8 7 3.8964 0.2198 -3.0785 9 6 4.8423 0.7907 -4.0405 10 1 5.6749 0.1032 -4.1893 11 6 5.3675 2.1329 -3.5151 12 8 6.3614 2.6134 -4.4213 13 6 6.0594 2.6273 -5.7458 14 6 6.8372 3.4070 -6.5961 15 6 6.5644 3.4440 -7.9480 16 6 5.5145 2.7046 -8.4611 17 6 4.7390 1.9312 -7.6198 18 6 5.0079 1.8905 -6.2617 19 6 4.1339 1.0409 -5.3743 20 6 3.9835 -1.6549 0.0922 21 6 3.4692 -0.9183 1.3407 22 1 3.6600 -1.5247 2.2261 23 6 4.1800 0.4300 1.4746 24 7 2.0232 -0.7011 1.1937 25 6 1.1510 -1.1436 2.1522 26 1 1.1392 -2.1869 2.4313 27 6 0.2821 -0.2514 2.7651 28 7 -0.8364 -0.6875 3.3047 29 14 0.7002 1.5683 2.8241 30 1 0.0730 2.2581 1.6682 31 1 0.1860 2.1536 4.0884 32 1 2.1739 1.7398 2.7628 33 1 -0.3633 -1.0273 0.0280 34 1 -0.3634 0.5379 0.8755 35 1 -0.3634 0.4893 -0.9037 36 1 1.8540 -0.1253 -2.1312 37 1 1.5387 -1.6921 -1.3442 38 1 2.9445 0.3728 -3.1850 39 1 4.5484 2.8494 -3.4548 40 1 5.8077 1.9936 -2.5277 41 1 7.6575 3.9849 -6.1966 42 1 7.1705 4.0499 -8.6052 43 1 5.3011 2.7317 -9.5195 44 1 3.9198 1.3543 -8.0229 45 1 3.9369 0.0876 -5.8647 46 1 3.1909 1.5565 -5.1930 47 1 3.6120 -2.6796 0.0898 48 1 5.0735 -1.6583 0.0906 49 1 3.8016 0.9546 2.3520 50 1 5.2521 0.2663 1.5835 51 1 3.9926 1.0297 0.5839 52 1 -1.4435 -0.0640 3.7333 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585137487.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:08 Heat of formation + Delta-G solvation = -15.851106 kcal Electronic energy + Delta-G solvation = -33586.929347 eV Core-core repulsion = 29359.169071 eV Total energy + Delta-G solvation = -4227.760276 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.02280 -41.25063 -39.31496 -38.42446 -36.69656 -35.79039 -34.61088 -33.52821 -33.35714 -31.27324 -30.61796 -29.98063 -27.82908 -27.19512 -26.85353 -25.23334 -24.36211 -23.44624 -22.81235 -21.56859 -21.30387 -20.25163 -19.42741 -18.85893 -18.27833 -17.95127 -17.28973 -16.95226 -16.68928 -16.51876 -16.30864 -15.91495 -15.62315 -15.43656 -15.29121 -15.15387 -14.86503 -14.77847 -14.41813 -14.38304 -14.28074 -14.06640 -13.99301 -13.81553 -13.29729 -13.17118 -12.89012 -12.78538 -12.66702 -12.48368 -12.39110 -12.36013 -12.19425 -11.90779 -11.87277 -11.74737 -11.69471 -11.59831 -11.41378 -11.12045 -10.51894 -10.30878 -9.74266 -9.63165 -9.13197 -8.32362 -8.13831 -5.75973 0.35858 0.46758 1.33186 1.44677 1.49354 1.55192 2.08106 2.28451 2.43862 2.77676 2.84491 3.05405 3.30692 3.47734 3.55662 3.81772 3.85420 4.02213 4.06425 4.07504 4.22029 4.26121 4.33947 4.37214 4.42923 4.48217 4.49879 4.52335 4.60328 4.65509 4.67253 4.71567 4.81725 4.85931 4.88392 4.90466 4.98215 5.05769 5.09676 5.14976 5.28088 5.33588 5.36039 5.37196 5.50600 5.53255 5.60855 5.68990 5.87820 5.93569 6.03342 6.38534 6.43616 6.91134 7.13202 7.49877 7.60992 8.21553 8.97010 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.018255 B = 0.002457 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.465804 B =11391.737809 C =11621.800107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.150 3.850 3 H 0.028 0.972 4 C 0.110 3.890 5 N -0.615 5.615 6 C 0.707 3.293 7 O -0.629 6.629 8 N -0.725 5.725 9 C 0.138 3.862 10 H 0.076 0.924 11 C 0.054 3.946 12 O -0.329 6.329 13 C 0.100 3.900 14 C -0.166 4.166 15 C -0.089 4.089 16 C -0.153 4.153 17 C -0.086 4.086 18 C -0.166 4.166 19 C -0.076 4.076 20 C 0.130 3.870 21 C 0.146 3.854 22 H 0.073 0.927 23 C -0.150 4.150 24 N -0.600 5.600 25 C -0.265 4.265 26 H 0.030 0.970 27 C 0.028 3.972 28 N -0.929 5.929 29 Si 0.912 3.088 30 H -0.269 1.269 31 H -0.315 1.315 32 H -0.252 1.252 33 H 0.049 0.951 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.411 0.589 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.131 0.869 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.063 0.937 48 H 0.085 0.915 49 H 0.040 0.960 50 H 0.060 0.940 51 H 0.039 0.961 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.984 7.564 -24.350 27.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.044 3.956 3 H 0.046 0.954 4 C -0.014 4.014 5 N -0.350 5.350 6 C 0.409 3.591 7 O -0.510 6.510 8 N -0.385 5.385 9 C 0.032 3.968 10 H 0.095 0.905 11 C -0.022 4.022 12 O -0.243 6.243 13 C 0.056 3.944 14 C -0.184 4.184 15 C -0.107 4.107 16 C -0.171 4.171 17 C -0.103 4.103 18 C -0.167 4.167 19 C -0.113 4.113 20 C 0.005 3.995 21 C 0.040 3.960 22 H 0.091 0.909 23 C -0.209 4.209 24 N -0.325 5.325 25 C -0.395 4.395 26 H 0.047 0.953 27 C -0.172 4.172 28 N -0.570 5.570 29 Si 0.740 3.260 30 H -0.195 1.195 31 H -0.244 1.244 32 H -0.176 1.176 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.251 0.749 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.149 0.851 42 H 0.170 0.830 43 H 0.168 0.832 44 H 0.167 0.833 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.081 0.919 48 H 0.104 0.896 49 H 0.059 0.941 50 H 0.079 0.921 51 H 0.059 0.941 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.845 7.453 -24.090 27.071 hybrid contribution -0.666 0.727 1.102 1.478 sum 9.180 8.180 -22.989 26.070 Atomic orbital electron populations 1.21913 0.94480 1.02074 1.01016 1.21082 0.93947 0.93753 0.86793 0.95405 1.22240 0.79274 1.01392 0.98527 1.47134 1.06740 1.59861 1.21222 1.15916 0.84412 0.78673 0.80144 1.90877 1.16593 1.64593 1.78968 1.44995 1.10720 1.55660 1.27172 1.21221 0.92911 0.93989 0.88710 0.90548 1.23382 0.91624 0.95250 0.91987 1.86020 1.42378 1.81198 1.14674 1.19144 0.95980 0.96157 0.83167 1.20852 1.02281 1.01358 0.93922 1.21285 0.97388 0.98337 0.93654 1.21414 0.96253 0.98252 1.01205 1.21215 0.99695 0.98271 0.91163 1.19873 0.98965 1.01648 0.96257 1.20730 0.98092 1.00897 0.91591 1.21963 0.99389 0.94702 0.83463 1.21285 0.84070 0.94734 0.95920 0.90867 1.22154 0.99676 0.98745 1.00346 1.44338 1.00763 1.68033 1.19318 1.18167 1.14157 0.91545 1.15605 0.95296 1.26299 0.95364 1.00756 0.94757 1.70023 1.10019 1.36681 1.40239 0.86502 0.80036 0.83465 0.76016 1.19519 1.24377 1.17580 0.93161 0.93950 0.90616 0.87919 0.90945 0.74889 0.90237 0.88941 0.85097 0.83004 0.83193 0.83326 0.87772 0.87711 0.91857 0.89642 0.94060 0.92077 0.94146 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 7.87 71.98 0.57 -4.54 16 2 C 0.15 5.38 2.10 45.03 0.09 5.47 16 3 H 0.03 1.03 7.04 -2.39 -0.02 1.01 16 4 C 0.11 3.05 5.90 86.42 0.51 3.56 16 5 N -0.61 -18.70 2.58 -835.16 -2.16 -20.86 16 6 C 0.71 21.33 8.27 179.06 1.48 22.81 16 7 O -0.63 -23.63 15.41 -4.01 -0.06 -23.69 16 8 N -0.73 -15.76 5.01 -457.03 -2.29 -18.05 16 9 C 0.14 2.92 2.72 45.16 0.12 3.04 16 10 H 0.08 2.06 7.54 -2.39 -0.02 2.05 16 11 C 0.05 1.24 6.62 72.12 0.48 1.71 16 12 O -0.33 -8.33 10.27 -91.91 -0.94 -9.27 16 13 C 0.10 2.17 6.47 22.52 0.15 2.32 16 14 C -0.17 -3.07 9.94 22.42 0.22 -2.84 16 15 C -0.09 -1.20 10.04 22.22 0.22 -0.97 16 16 C -0.15 -1.84 10.04 22.25 0.22 -1.61 16 17 C -0.09 -1.14 9.67 22.30 0.22 -0.92 16 18 C -0.17 -2.91 5.75 -19.75 -0.11 -3.02 16 19 C -0.08 -1.11 5.36 29.90 0.16 -0.95 16 20 C 0.13 4.33 5.99 86.56 0.52 4.84 16 21 C 0.15 5.53 3.32 45.18 0.15 5.68 16 22 H 0.07 2.88 7.93 -2.39 -0.02 2.86 16 23 C -0.15 -5.42 9.12 71.98 0.66 -4.76 16 24 N -0.60 -25.41 1.83 -649.90 -1.19 -26.60 16 25 C -0.27 -13.71 8.67 84.03 0.73 -12.99 16 26 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 27 C 0.03 1.51 3.76 84.86 0.32 1.83 16 28 N -0.93 -53.59 13.97 21.65 0.30 -53.28 16 29 Si 0.91 42.72 25.27 68.60 1.73 44.45 16 30 H -0.27 -11.90 6.62 99.48 0.66 -11.24 16 31 H -0.32 -15.42 7.11 99.48 0.71 -14.71 16 32 H -0.25 -11.44 5.03 99.48 0.50 -10.94 16 33 H 0.05 2.04 7.83 -2.39 -0.02 2.02 16 34 H 0.04 1.86 3.34 -2.39 -0.01 1.85 16 35 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.10 1.98 5.55 -2.39 -0.01 1.97 16 37 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 38 H 0.41 6.64 6.02 -92.71 -0.56 6.08 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 42 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 43 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 44 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 45 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.10 1.12 8.10 -2.39 -0.02 1.10 16 47 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.09 2.88 7.00 -2.39 -0.02 2.86 16 49 H 0.04 1.62 6.09 -2.39 -0.01 1.61 16 50 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 51 H 0.04 1.44 7.02 -2.39 -0.02 1.43 16 52 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 Total: -1.00 -68.51 393.75 2.21 -66.30 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.12 Total: 22.37 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 6.70 Total: 18.65 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -5.34 Total: -118.80 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -1.01 Total: -32.96 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.73 Total: 44.45 kcal Total: -68.51 2.21 -66.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585137487.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.445 kcal (2) G-P(sol) polarization free energy of solvation -68.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds