Wall clock time and date at job start Tue Mar 31 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.74439 * 2 1 4 4 C 1.53378 * 109.60988 * 239.57562 * 2 1 3 5 5 N 1.46958 * 108.63451 * 190.83348 * 4 2 1 6 6 C 1.34783 * 120.59352 * 235.20509 * 5 4 2 7 7 O 1.21587 * 119.99610 * 6.41465 * 6 5 4 8 8 N 1.34774 * 120.00083 * 186.42567 * 6 5 4 9 9 C 1.46501 * 120.00122 * 175.07306 * 8 6 5 10 10 H 1.08999 * 109.69019 * 324.43714 * 9 8 6 11 11 C 1.53402 * 109.69718 * 84.99345 * 9 8 6 12 12 O 1.42824 * 108.39223 * 184.42532 * 11 9 8 13 13 C 1.35847 * 117.86563 * 310.84329 * 12 11 9 14 14 C 1.39148 * 118.49921 * 197.11362 * 13 12 11 15 15 C 1.37968 * 120.21488 * 180.30765 * 14 13 12 16 16 C 1.38288 * 119.95873 * 0.02562 * 15 14 13 17 17 C 1.38101 * 119.98117 * 359.90413 * 16 15 14 18 18 C 1.38369 * 121.80593 * 17.26315 * 13 12 11 19 19 C 1.50770 * 121.40401 * 359.40129 * 18 13 12 20 20 C 1.46963 * 118.81447 * 55.47491 * 5 4 2 21 21 C 1.53811 * 108.40090 * 304.48620 * 20 5 4 22 22 H 1.08999 * 109.88246 * 289.76410 * 21 20 5 23 23 C 1.53000 * 109.53615 * 169.30104 * 21 20 5 24 24 N 1.46957 * 109.61068 * 120.43352 * 2 1 3 25 25 C 1.36938 * 120.59450 * 354.98781 * 24 2 1 26 26 H 1.07999 * 120.00242 * 53.92742 * 25 24 2 27 27 C 1.38810 * 120.00294 * 233.93337 * 25 24 2 28 28 N 1.31625 * 120.00103 * 24.58768 * 27 25 24 29 29 Si 1.86801 * 120.00176 * 204.58695 * 27 25 24 30 30 H 1.48501 * 109.46885 * 0.02562 * 29 27 25 31 31 H 1.48499 * 109.47210 * 119.99836 * 29 27 25 32 32 H 1.48502 * 109.47412 * 239.99570 * 29 27 25 33 33 H 1.08996 * 109.47318 * 180.42274 * 1 2 3 34 34 H 1.08996 * 109.47224 * 300.42341 * 1 2 3 35 35 H 1.09000 * 109.47187 * 60.42607 * 1 2 3 36 36 H 1.08997 * 109.60726 * 71.08617 * 4 2 1 37 37 H 1.09000 * 109.74418 * 310.66049 * 4 2 1 38 38 H 0.96995 * 119.99767 * 355.06835 * 8 6 5 39 39 H 1.09001 * 109.67865 * 64.70092 * 11 9 8 40 40 H 1.08998 * 109.68506 * 304.15589 * 11 9 8 41 41 H 1.08001 * 119.89150 * 0.29060 * 14 13 12 42 42 H 1.08005 * 120.01806 * 180.02562 * 15 14 13 43 43 H 1.08000 * 120.00681 * 179.87482 * 16 15 14 44 44 H 1.08006 * 119.84256 * 179.70506 * 17 16 15 45 45 H 1.09001 * 109.42039 * 257.86325 * 19 18 13 46 46 H 1.08990 * 109.44755 * 137.98832 * 19 18 13 47 47 H 1.09004 * 109.60939 * 64.26783 * 20 5 4 48 48 H 1.08998 * 109.61055 * 184.77293 * 20 5 4 49 49 H 1.09002 * 109.46950 * 292.87166 * 23 21 20 50 50 H 1.08999 * 109.47041 * 52.86981 * 23 21 20 51 51 H 1.08992 * 109.47027 * 172.87196 * 23 21 20 52 52 H 0.96997 * 119.99900 * 184.93211 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0448 -0.7317 -1.2459 5 7 3.4907 -0.9489 -1.0989 6 6 4.3492 -0.5132 -2.0423 7 8 3.9440 0.1658 -2.9659 8 7 5.6566 -0.8304 -1.9618 9 6 6.5706 -0.4495 -3.0415 10 1 6.0565 -0.5202 -4.0000 11 6 7.0598 0.9878 -2.8219 12 8 7.8638 1.3660 -3.9401 13 6 8.8429 0.5116 -4.3360 14 6 9.8522 0.9956 -5.1627 15 6 10.8606 0.1572 -5.5911 16 6 10.8695 -1.1689 -5.1990 17 6 9.8702 -1.6523 -4.3775 18 6 8.8566 -0.8148 -3.9422 19 6 7.7881 -1.3773 -3.0394 20 6 3.9835 -1.6550 0.0921 21 6 3.4693 -0.9184 1.3406 22 1 3.9753 0.0419 1.4391 23 6 3.7370 -1.7698 2.5834 24 7 2.0232 -0.7012 1.1936 25 6 1.1510 -1.1446 2.1516 26 1 0.3227 -1.7802 1.8753 27 6 1.3313 -0.7771 3.4780 28 7 1.9861 0.3262 3.7721 29 14 0.6448 -1.8484 4.8457 30 1 -0.0437 -3.0242 4.2551 31 1 1.7550 -2.3114 5.7165 32 1 -0.3221 -1.0617 5.6528 33 1 -0.3634 -1.0276 0.0076 34 1 -0.3633 0.5204 0.8861 35 1 -0.3633 0.5072 -0.8938 36 1 1.8540 -0.1251 -2.1312 37 1 1.5386 -1.6920 -1.3443 38 1 5.9924 -1.3108 -1.1890 39 1 7.6535 1.0380 -1.9091 40 1 6.2044 1.6585 -2.7412 41 1 9.8459 2.0310 -5.4701 42 1 11.6427 0.5364 -6.2324 43 1 11.6574 -1.8264 -5.5356 44 1 9.8767 -2.6896 -4.0765 45 1 8.1782 -1.4615 -2.0250 46 1 7.4931 -2.3636 -3.3970 47 1 3.6120 -2.6798 0.0896 48 1 5.0735 -1.6585 0.0904 49 1 3.1225 -2.6693 2.5468 50 1 4.7900 -2.0500 2.6118 51 1 3.4893 -1.1965 3.4767 52 1 2.1743 0.5463 4.6978 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585137489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:19 Heat of formation + Delta-G solvation = -2.126409 kcal Electronic energy + Delta-G solvation = -33139.272726 eV Core-core repulsion = 28912.107597 eV Total energy + Delta-G solvation = -4227.165129 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.06612 -39.92092 -37.87027 -37.39009 -35.57871 -34.21370 -33.23415 -32.43362 -31.29195 -30.53987 -29.61237 -27.75057 -26.15224 -26.02974 -25.66347 -23.99767 -23.22892 -22.63870 -20.58479 -20.30935 -20.24615 -19.21106 -18.05530 -17.87287 -16.97619 -16.26722 -16.04809 -15.79027 -15.42734 -15.04856 -14.86597 -14.61007 -14.47617 -14.35170 -14.04982 -13.92182 -13.70363 -13.52406 -13.33365 -13.22007 -13.00658 -12.70090 -12.13309 -12.06457 -11.75135 -11.64361 -11.58870 -11.56453 -11.34182 -11.10807 -11.02317 -10.86925 -10.76686 -10.55625 -10.51317 -10.40142 -10.11705 -9.97269 -9.88396 -9.60903 -9.15348 -9.06887 -8.40595 -8.33695 -7.98947 -6.49404 -5.79407 -3.63450 1.03177 1.17726 2.71423 3.20008 3.25051 3.37024 3.39359 3.41769 3.50284 4.05639 4.30884 4.37951 4.42746 4.58495 4.61722 4.83253 4.89131 5.04582 5.08192 5.18441 5.21681 5.24222 5.34559 5.47099 5.60959 5.62529 5.69347 5.73592 5.75136 5.89630 5.97846 6.02949 6.06804 6.14564 6.17990 6.25289 6.34943 6.40919 6.41966 6.49214 6.53536 6.56827 6.60646 6.75446 6.84850 7.09252 7.16017 7.25953 7.27818 7.36640 7.50632 7.78442 8.19440 8.53848 8.82995 9.10063 9.63591 10.41981 11.06094 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.020515 B = 0.002203 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.505816 B =12709.098783 C =13320.381069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.155 3.845 3 H 0.029 0.971 4 C 0.117 3.883 5 N -0.613 5.613 6 C 0.705 3.295 7 O -0.598 6.598 8 N -0.743 5.743 9 C 0.135 3.865 10 H 0.100 0.900 11 C 0.051 3.949 12 O -0.309 6.309 13 C 0.134 3.866 14 C -0.150 4.150 15 C -0.088 4.088 16 C -0.155 4.155 17 C -0.082 4.082 18 C -0.156 4.156 19 C -0.085 4.085 20 C 0.094 3.906 21 C 0.182 3.818 22 H 0.031 0.969 23 C -0.142 4.142 24 N -0.575 5.575 25 C -0.267 4.267 26 H 0.054 0.946 27 C 0.040 3.960 28 N -0.867 5.867 29 Si 0.876 3.124 30 H -0.272 1.272 31 H -0.285 1.285 32 H -0.288 1.288 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.398 0.602 39 H 0.066 0.934 40 H 0.117 0.883 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.066 0.934 48 H 0.059 0.941 49 H 0.055 0.945 50 H 0.024 0.976 51 H 0.086 0.914 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.672 -4.198 -13.210 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 H 0.047 0.953 4 C -0.007 4.007 5 N -0.348 5.348 6 C 0.407 3.593 7 O -0.477 6.477 8 N -0.403 5.403 9 C 0.028 3.972 10 H 0.118 0.882 11 C -0.025 4.025 12 O -0.222 6.222 13 C 0.088 3.912 14 C -0.168 4.168 15 C -0.106 4.106 16 C -0.174 4.174 17 C -0.100 4.100 18 C -0.158 4.158 19 C -0.122 4.122 20 C -0.031 4.031 21 C 0.074 3.926 22 H 0.049 0.951 23 C -0.200 4.200 24 N -0.299 5.299 25 C -0.396 4.396 26 H 0.072 0.928 27 C -0.163 4.163 28 N -0.506 5.506 29 Si 0.703 3.297 30 H -0.197 1.197 31 H -0.211 1.211 32 H -0.215 1.215 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.235 0.765 39 H 0.084 0.916 40 H 0.135 0.865 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.102 0.898 46 H 0.108 0.892 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.074 0.926 50 H 0.043 0.957 51 H 0.104 0.896 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.259 -3.387 -13.802 20.852 hybrid contribution 0.012 -0.937 1.504 1.772 sum 15.272 -4.324 -12.298 20.079 Atomic orbital electron populations 1.21631 0.94973 1.01427 1.00407 1.20903 0.93556 0.93851 0.86813 0.95304 1.22210 0.77638 1.00508 1.00343 1.47207 1.07084 1.59621 1.20897 1.15857 0.80637 0.80102 0.82724 1.90883 1.77315 1.43368 1.36125 1.45176 1.07055 1.63868 1.24186 1.21248 0.89745 0.93540 0.92655 0.88208 1.23509 0.94577 0.97437 0.86990 1.86065 1.43644 1.44277 1.48175 1.18820 0.88677 0.88378 0.95298 1.20623 0.93815 1.00955 1.01438 1.20939 0.97480 0.93484 0.98691 1.21003 0.99830 0.95989 1.00545 1.20886 0.93287 0.99225 0.96601 1.19697 0.99149 0.93044 1.03904 1.20748 0.92402 0.99493 0.99590 1.22610 0.96673 0.96823 0.86963 1.20673 0.86235 0.95093 0.90561 0.95093 1.21964 0.97080 1.00711 1.00262 1.43936 1.00724 1.64981 1.20291 1.18659 1.09732 1.24661 0.86584 0.92832 1.25502 0.97522 0.94202 0.99048 1.70272 1.42223 1.20035 1.18046 0.86717 0.78904 0.81254 0.82812 1.19685 1.21080 1.21482 0.92877 0.91448 0.94403 0.90068 0.92248 0.76473 0.91596 0.86550 0.85173 0.85473 0.85891 0.85745 0.89766 0.89224 0.91609 0.92327 0.92581 0.95682 0.89577 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.18 37.16 0.30 -2.12 16 2 C 0.16 3.25 3.65 -67.49 -0.25 3.01 16 3 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 4 C 0.12 2.18 5.91 -3.60 -0.02 2.16 16 5 N -0.61 -10.80 2.94 -177.94 -0.52 -11.33 16 6 C 0.71 12.15 8.26 -86.91 -0.72 11.43 16 7 O -0.60 -12.17 15.48 5.29 0.08 -12.08 16 8 N -0.74 -9.70 5.01 -58.43 -0.29 -9.99 16 9 C 0.13 1.62 2.64 -67.68 -0.18 1.44 16 10 H 0.10 1.41 7.68 -51.93 -0.40 1.02 16 11 C 0.05 0.64 6.62 37.37 0.25 0.89 16 12 O -0.31 -4.05 10.27 -19.26 -0.20 -4.25 16 13 C 0.13 1.56 6.47 -39.20 -0.25 1.31 16 14 C -0.15 -1.50 9.94 -39.34 -0.39 -1.89 16 15 C -0.09 -0.72 10.04 -39.66 -0.40 -1.12 16 16 C -0.16 -1.24 10.04 -39.61 -0.40 -1.63 16 17 C -0.08 -0.71 9.67 -39.53 -0.38 -1.09 16 18 C -0.16 -1.60 5.75 -104.44 -0.60 -2.21 16 19 C -0.08 -0.79 5.36 -27.81 -0.15 -0.94 16 20 C 0.09 1.56 5.89 -3.37 -0.02 1.54 16 21 C 0.18 3.74 3.33 -67.25 -0.22 3.52 16 22 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 23 C -0.14 -2.86 7.85 37.16 0.29 -2.57 16 24 N -0.57 -13.12 2.75 -156.77 -0.43 -13.55 16 25 C -0.27 -6.60 6.59 -15.06 -0.10 -6.70 16 26 H 0.05 1.36 7.20 -52.49 -0.38 0.98 16 27 C 0.04 1.02 3.08 -17.43 -0.05 0.97 16 28 N -0.87 -23.34 12.12 55.49 0.67 -22.67 16 29 Si 0.88 19.81 29.62 -169.99 -5.04 14.78 16 30 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 31 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 32 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 33 H 0.05 1.00 7.44 -51.93 -0.39 0.61 16 34 H 0.07 1.44 7.75 -51.93 -0.40 1.03 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 1.52 6.99 -51.93 -0.36 1.16 16 37 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 38 H 0.40 4.39 6.06 -40.82 -0.25 4.14 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.12 1.64 8.13 -51.93 -0.42 1.22 16 41 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 43 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 45 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 46 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.07 1.08 8.12 -51.93 -0.42 0.66 16 48 H 0.06 0.78 5.63 -51.93 -0.29 0.49 16 49 H 0.06 1.15 7.55 -51.93 -0.39 0.75 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.09 2.00 5.11 -51.93 -0.27 1.74 16 52 H 0.25 6.61 8.32 -40.82 -0.34 6.27 16 LS Contribution 402.06 15.07 6.06 6.06 Total: -1.00 -29.88 402.06 -11.13 -41.01 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -8.18 Total: 6.04 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -3.29 Total: 5.97 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.57 Total: -57.54 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.12 Total: -16.33 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.04 Total: 14.78 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.88 -11.13 -41.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585137489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.887 kcal (2) G-P(sol) polarization free energy of solvation -29.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds