Wall clock time and date at job start Tue Mar 31 2020 05:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.75075 * 2 1 4 4 C 1.53380 * 109.60947 * 239.57746 * 2 1 3 5 5 N 1.46968 * 108.63387 * 190.83242 * 4 2 1 6 6 C 1.34778 * 120.59195 * 235.24823 * 5 4 2 7 7 O 1.21582 * 120.00033 * 174.52994 * 6 5 4 8 8 N 1.34773 * 119.99763 * 354.52527 * 6 5 4 9 9 C 1.46509 * 119.99685 * 185.01122 * 8 6 5 10 10 H 1.09000 * 109.69694 * 35.00056 * 9 8 6 11 11 C 1.53410 * 109.69496 * 274.43955 * 9 8 6 12 12 O 1.42837 * 108.37363 * 175.58194 * 11 9 8 13 13 C 1.35845 * 117.85778 * 49.18044 * 12 11 9 14 14 C 1.39148 * 118.49988 * 162.83103 * 13 12 11 15 15 C 1.37973 * 120.21914 * 179.79776 * 14 13 12 16 16 C 1.38293 * 119.95515 * 359.97438 * 15 14 13 17 17 C 1.38109 * 119.98017 * 0.07458 * 16 15 14 18 18 C 1.38366 * 121.81023 * 342.76485 * 13 12 11 19 19 C 1.50797 * 121.41750 * 0.48621 * 18 13 12 20 20 C 1.46958 * 118.81204 * 55.22590 * 5 4 2 21 21 C 1.53368 * 108.63708 * 304.77022 * 20 5 4 22 22 H 1.09001 * 109.61247 * 289.51080 * 21 20 5 23 23 C 1.53000 * 109.61032 * 169.16618 * 21 20 5 24 24 N 1.46964 * 109.61167 * 120.43232 * 2 1 3 25 25 C 1.36938 * 120.59307 * 354.99123 * 24 2 1 26 26 H 1.08005 * 120.00033 * 125.03227 * 25 24 2 27 27 C 1.38808 * 119.99975 * 305.03858 * 25 24 2 28 28 N 1.31622 * 119.99745 * 343.26517 * 27 25 24 29 29 Si 1.86800 * 120.00269 * 163.27169 * 27 25 24 30 30 H 1.48500 * 109.47062 * 59.99292 * 29 27 25 31 31 H 1.48497 * 109.47302 * 179.97438 * 29 27 25 32 32 H 1.48497 * 109.47084 * 299.99668 * 29 27 25 33 33 H 1.08995 * 109.46853 * 190.69908 * 1 2 3 34 34 H 1.08996 * 109.47013 * 310.70125 * 1 2 3 35 35 H 1.08996 * 109.46594 * 70.69787 * 1 2 3 36 36 H 1.08999 * 109.60943 * 71.08951 * 4 2 1 37 37 H 1.08998 * 109.60529 * 310.57607 * 4 2 1 38 38 H 0.97002 * 120.00943 * 5.01602 * 8 6 5 39 39 H 1.08998 * 109.68371 * 295.30287 * 11 9 8 40 40 H 1.08996 * 109.68519 * 55.82486 * 11 9 8 41 41 H 1.07999 * 119.89589 * 359.81534 * 14 13 12 42 42 H 1.07997 * 120.02496 * 179.97438 * 15 14 13 43 43 H 1.07997 * 120.00791 * 180.02562 * 16 15 14 44 44 H 1.07998 * 119.83967 * 180.02562 * 17 16 15 45 45 H 1.08991 * 109.47204 * 222.13140 * 19 18 13 46 46 H 1.09000 * 109.41131 * 102.24745 * 19 18 13 47 47 H 1.09004 * 109.60964 * 185.02762 * 20 5 4 48 48 H 1.08998 * 109.61237 * 64.52154 * 20 5 4 49 49 H 1.09004 * 109.46715 * 60.00683 * 23 21 20 50 50 H 1.08993 * 109.47616 * 300.00367 * 23 21 20 51 51 H 1.09007 * 109.47140 * 180.02562 * 23 21 20 52 52 H 0.97001 * 119.99505 * 185.04281 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8984 1.0259 0.0000 4 6 2.0448 -0.7316 -1.2459 5 7 3.4909 -0.9489 -1.0990 6 6 4.3493 -0.5124 -2.0419 7 8 5.5482 -0.6085 -1.8638 8 7 3.8788 0.0305 -3.1822 9 6 4.8064 0.4040 -4.2529 10 1 5.6318 -0.3071 -4.2886 11 6 5.3505 1.8153 -3.9966 12 8 6.3269 2.1099 -4.9967 13 6 5.9957 1.8808 -6.2941 14 6 6.7590 2.4818 -7.2902 15 6 6.4567 2.2701 -8.6197 16 6 5.3921 1.4576 -8.9648 17 6 4.6317 0.8603 -7.9786 18 6 4.9291 1.0712 -6.6425 19 6 4.0704 0.4082 -5.5951 20 6 3.9840 -1.6501 0.0947 21 6 3.4694 -0.9185 1.3405 22 1 3.9780 0.0407 1.4377 23 6 3.7371 -1.7699 2.5832 24 7 2.0233 -0.7012 1.1937 25 6 1.1511 -1.1446 2.1517 26 1 1.1557 -2.1836 2.4469 27 6 0.2609 -0.2590 2.7432 28 7 0.4591 1.0384 2.6432 29 14 -1.2181 -0.9082 3.6815 30 1 -0.7556 -1.7582 4.8079 31 1 -2.0064 0.2322 4.2136 32 1 -2.0679 -1.7149 2.7692 33 1 -0.3633 -1.0098 0.1908 34 1 -0.3633 0.6701 0.7791 35 1 -0.3632 0.3397 -0.9699 36 1 1.8541 -0.1251 -2.1312 37 1 1.5384 -1.6921 -1.3414 38 1 2.9260 0.1740 -3.2941 39 1 4.5369 2.5384 -4.0534 40 1 5.8110 1.8576 -3.0095 41 1 7.5911 3.1160 -7.0220 42 1 7.0509 2.7384 -9.3903 43 1 5.1549 1.2909 -10.0051 44 1 3.8011 0.2259 -8.2507 45 1 3.8580 -0.6177 -5.8955 46 1 3.1342 0.9572 -5.4936 47 1 5.0741 -1.6501 0.0947 48 1 3.6158 -2.6760 0.0946 49 1 4.8089 -1.9423 2.6815 50 1 3.2227 -2.7259 2.4864 51 1 3.3701 -1.2481 3.4671 52 1 -0.1203 1.6555 3.1170 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585137490.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:25 Heat of formation + Delta-G solvation = -2.198851 kcal Electronic energy + Delta-G solvation = -33139.905423 eV Core-core repulsion = 28912.737153 eV Total energy + Delta-G solvation = -4227.168270 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.05628 -39.91020 -37.86056 -37.37945 -35.56706 -34.19751 -33.22167 -32.42217 -31.25444 -30.53258 -29.60219 -27.73368 -26.12885 -26.02123 -25.61011 -23.99332 -23.22346 -22.63214 -20.56259 -20.28363 -20.24448 -19.19575 -18.04748 -17.85408 -16.96403 -16.25627 -16.01871 -15.78189 -15.41963 -15.07313 -14.86264 -14.57889 -14.44465 -14.34241 -14.04243 -13.93129 -13.65349 -13.51556 -13.32442 -13.20833 -12.99510 -12.67974 -12.10508 -12.04597 -11.73226 -11.62951 -11.57108 -11.51167 -11.31609 -11.07553 -11.01414 -10.86291 -10.75881 -10.56428 -10.51626 -10.42142 -10.09345 -9.92984 -9.86398 -9.56825 -9.14106 -9.06212 -8.39626 -8.33500 -8.01438 -6.35481 -5.84696 -3.63334 1.03845 1.18317 2.72768 3.20756 3.26896 3.33552 3.35831 3.43220 3.51055 4.07160 4.31679 4.35707 4.43712 4.59332 4.62456 4.83906 4.90094 5.07951 5.10722 5.19383 5.22013 5.24913 5.35381 5.47775 5.62729 5.64368 5.72088 5.74377 5.76058 5.91140 6.01063 6.03590 6.09611 6.15244 6.18685 6.25877 6.35879 6.42606 6.43276 6.53450 6.56243 6.57761 6.68338 6.80347 6.87727 7.08868 7.18719 7.26625 7.29731 7.41497 7.63423 7.81226 8.21138 8.55911 8.84453 9.12526 9.63714 10.42377 11.10279 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.020905 B = 0.002192 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.100965 B =12769.171904 C =13361.931972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.185 3.815 3 H 0.031 0.969 4 C 0.093 3.907 5 N -0.613 5.613 6 C 0.705 3.295 7 O -0.598 6.598 8 N -0.743 5.743 9 C 0.135 3.865 10 H 0.100 0.900 11 C 0.051 3.949 12 O -0.309 6.309 13 C 0.134 3.866 14 C -0.150 4.150 15 C -0.088 4.088 16 C -0.155 4.155 17 C -0.082 4.082 18 C -0.156 4.156 19 C -0.085 4.085 20 C 0.117 3.883 21 C 0.156 3.844 22 H 0.029 0.971 23 C -0.127 4.127 24 N -0.575 5.575 25 C -0.264 4.264 26 H 0.053 0.947 27 C 0.038 3.962 28 N -0.878 5.878 29 Si 0.888 3.112 30 H -0.279 1.279 31 H -0.290 1.290 32 H -0.278 1.278 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.020 0.980 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.398 0.602 39 H 0.066 0.934 40 H 0.116 0.884 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.059 0.941 49 H 0.037 0.963 50 H 0.052 0.948 51 H 0.066 0.934 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.704 0.638 -19.541 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.078 3.922 3 H 0.049 0.951 4 C -0.032 4.032 5 N -0.348 5.348 6 C 0.407 3.593 7 O -0.478 6.478 8 N -0.403 5.403 9 C 0.028 3.972 10 H 0.118 0.882 11 C -0.025 4.025 12 O -0.222 6.222 13 C 0.088 3.912 14 C -0.168 4.168 15 C -0.106 4.106 16 C -0.174 4.174 17 C -0.100 4.100 18 C -0.158 4.158 19 C -0.122 4.122 20 C -0.007 4.007 21 C 0.049 3.951 22 H 0.047 0.953 23 C -0.185 4.185 24 N -0.300 5.300 25 C -0.394 4.394 26 H 0.070 0.930 27 C -0.165 4.165 28 N -0.517 5.517 29 Si 0.716 3.284 30 H -0.204 1.204 31 H -0.215 1.215 32 H -0.204 1.204 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.235 0.765 39 H 0.084 0.916 40 H 0.134 0.866 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.108 0.892 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.077 0.923 49 H 0.056 0.944 50 H 0.071 0.929 51 H 0.085 0.915 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.625 0.779 -19.271 20.393 hybrid contribution -1.623 -0.159 0.463 1.695 sum 5.002 0.620 -18.807 19.471 Atomic orbital electron populations 1.22013 0.94940 1.03436 0.99889 1.20575 0.93769 0.93405 0.84490 0.95150 1.22571 0.79858 1.00774 0.99992 1.47211 1.06524 1.59714 1.21311 1.15851 0.85214 0.78232 0.80021 1.90879 1.13630 1.63680 1.79583 1.45179 1.10145 1.68630 1.16335 1.21254 0.93451 0.96722 0.85774 0.88183 1.23510 0.91936 0.95892 0.91169 1.86066 1.41712 1.81764 1.12629 1.18817 0.94102 0.94018 0.84231 1.20623 1.02136 1.02718 0.91357 1.20939 0.96954 0.97543 0.95167 1.21005 0.97081 0.99981 0.99303 1.20886 0.99091 0.98746 0.91278 1.19703 0.98982 1.01772 0.95327 1.20758 0.97942 1.01797 0.91747 1.22210 0.99280 0.94916 0.84321 1.20889 0.87089 0.95576 0.91521 0.95333 1.21636 0.98222 1.00026 0.98567 1.43900 0.99435 1.67531 1.19110 1.18608 1.12727 0.92005 1.16089 0.92988 1.25647 0.99664 0.95235 0.95913 1.70005 1.38231 1.01183 1.42313 0.86638 0.83302 0.78239 0.80200 1.20432 1.21539 1.20401 0.92708 0.88857 0.96065 0.92385 0.91733 0.76450 0.91586 0.86563 0.85179 0.85478 0.85895 0.85746 0.89224 0.89766 0.90055 0.92263 0.94394 0.92884 0.91504 0.93279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 7.83 37.16 0.29 -2.69 16 2 C 0.18 3.86 3.21 -67.48 -0.22 3.64 16 3 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 4 C 0.09 1.56 5.85 -3.59 -0.02 1.54 16 5 N -0.61 -10.91 2.95 -178.22 -0.53 -11.43 16 6 C 0.71 12.26 8.26 -86.92 -0.72 11.54 16 7 O -0.60 -12.24 15.48 5.29 0.08 -12.16 16 8 N -0.74 -9.83 5.01 -58.42 -0.29 -10.12 16 9 C 0.13 1.63 2.64 -67.67 -0.18 1.45 16 10 H 0.10 1.43 7.67 -51.93 -0.40 1.03 16 11 C 0.05 0.64 6.62 37.37 0.25 0.89 16 12 O -0.31 -4.07 10.27 -19.26 -0.20 -4.27 16 13 C 0.13 1.57 6.47 -39.20 -0.25 1.32 16 14 C -0.15 -1.51 9.94 -39.34 -0.39 -1.90 16 15 C -0.09 -0.73 10.04 -39.66 -0.40 -1.13 16 16 C -0.16 -1.25 10.05 -39.61 -0.40 -1.64 16 17 C -0.08 -0.71 9.67 -39.53 -0.38 -1.10 16 18 C -0.16 -1.62 5.75 -104.43 -0.60 -2.22 16 19 C -0.08 -0.80 5.36 -27.80 -0.15 -0.95 16 20 C 0.12 2.18 5.91 -3.60 -0.02 2.16 16 21 C 0.16 3.27 3.65 -67.48 -0.25 3.02 16 22 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 23 C -0.13 -2.42 8.19 37.16 0.30 -2.12 16 24 N -0.58 -13.19 2.73 -157.02 -0.43 -13.62 16 25 C -0.26 -6.54 6.53 -15.06 -0.10 -6.63 16 26 H 0.05 1.31 7.18 -52.48 -0.38 0.93 16 27 C 0.04 0.95 3.51 -17.43 -0.06 0.89 16 28 N -0.88 -23.47 11.45 55.49 0.64 -22.83 16 29 Si 0.89 19.93 29.59 -169.99 -5.03 14.90 16 30 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 31 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 32 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 33 H 0.05 1.16 7.39 -51.93 -0.38 0.78 16 34 H 0.09 2.21 5.09 -51.93 -0.26 1.94 16 35 H 0.02 0.36 8.11 -51.93 -0.42 -0.07 16 36 H 0.06 0.79 5.62 -51.93 -0.29 0.50 16 37 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 38 H 0.40 4.48 6.05 -40.82 -0.25 4.24 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.12 1.64 8.14 -51.93 -0.42 1.22 16 41 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 44 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 47 H 0.08 1.53 6.99 -51.93 -0.36 1.17 16 48 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 49 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.05 1.00 7.46 -51.93 -0.39 0.61 16 51 H 0.07 1.41 7.75 -51.93 -0.40 1.01 16 52 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16 LS Contribution 401.32 15.07 6.05 6.05 Total: -1.00 -29.63 401.32 -11.16 -40.79 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -8.16 Total: 6.60 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -3.29 Total: 6.09 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.61 Total: -58.00 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.12 Total: -16.43 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.63 -11.16 -40.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585137490.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.593 kcal (2) G-P(sol) polarization free energy of solvation -29.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds