Wall clock time and date at job start Tue Mar 31 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99798 * 2 1 4 4 H 1.48501 * 109.46930 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47042 * 299.99205 * 3 2 1 6 6 H 1.48497 * 109.47271 * 59.99451 * 3 2 1 7 7 C 1.38811 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99653 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00251 * 0.02562 * 7 2 1 10 10 C 1.47431 * 125.64333 * 359.97438 * 9 7 2 11 11 C 1.54908 * 104.82665 * 155.89349 * 10 9 7 12 12 C 1.55160 * 101.58721 * 37.00844 * 11 10 9 13 13 C 1.47016 * 125.64993 * 179.97438 * 9 7 2 14 14 H 1.08996 * 110.01117 * 300.52978 * 13 9 7 15 15 C 1.50696 * 109.88250 * 61.62265 * 13 9 7 16 16 C 1.38095 * 119.57401 * 242.80499 * 15 13 9 17 17 C 1.38830 * 119.32165 * 179.97438 * 16 15 13 18 18 C 1.38353 * 118.50858 * 0.02562 * 17 16 15 19 19 C 1.39078 * 119.09520 * 359.97438 * 18 17 16 20 20 N 1.39164 * 119.70032 * 179.97438 * 19 18 17 21 21 C 1.38614 * 119.99948 * 174.89986 * 20 19 18 22 22 N 1.29564 * 125.25971 * 185.56955 * 21 20 19 23 23 C 1.33768 * 115.63427 * 179.83140 * 22 21 20 24 24 C 1.47016 * 122.51294 * 180.19702 * 23 22 21 25 25 O 1.21573 * 120.00189 * 180.28794 * 24 23 22 26 26 O 1.34821 * 120.00406 * 0.28869 * 24 23 22 27 27 C 1.34926 * 114.96789 * 0.46379 * 23 22 21 28 28 S 1.70965 * 109.21825 * 359.75990 * 27 23 22 29 29 N 1.31927 * 119.57524 * 63.08313 * 15 13 9 30 30 H 0.96997 * 119.99742 * 0.02562 * 1 2 3 31 31 H 1.08994 * 110.36770 * 37.06018 * 10 9 7 32 32 H 1.08995 * 110.45856 * 274.77188 * 10 9 7 33 33 H 1.09001 * 111.00547 * 278.92982 * 11 10 9 34 34 H 1.09007 * 111.00529 * 155.08261 * 11 10 9 35 35 H 1.08996 * 110.72040 * 206.13798 * 12 11 10 36 36 H 1.08994 * 110.71755 * 82.86024 * 12 11 10 37 37 H 1.07999 * 120.33817 * 0.02574 * 16 15 13 38 38 H 1.08005 * 120.74554 * 179.97438 * 17 16 15 39 39 H 1.07998 * 120.45532 * 179.97438 * 18 17 16 40 40 H 0.97003 * 120.00524 * 354.63011 * 20 19 18 41 41 H 0.96695 * 117.00280 * 179.97438 * 26 24 23 42 42 H 1.08000 * 125.38536 * 179.73119 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 -0.1415 -2.5331 0.0005 11 6 -0.4015 -3.9324 -0.6111 12 6 0.7785 -4.7525 -0.0259 13 6 1.9319 -3.7274 0.0005 14 1 2.5597 -3.8527 -0.8816 15 6 2.7568 -3.9166 1.2474 16 6 4.1182 -4.1214 1.1393 17 6 4.8733 -4.2945 2.2914 18 6 4.2290 -4.2557 3.5152 19 6 2.8547 -4.0453 3.5496 20 7 2.1938 -4.0045 4.7736 21 6 0.8446 -3.6906 4.8226 22 7 0.1543 -3.5237 5.9063 23 6 -1.1366 -3.2210 5.7294 24 6 -2.0566 -2.9956 6.8537 25 8 -3.2231 -2.7279 6.6404 26 8 -1.6068 -3.0857 8.1215 27 6 -1.5321 -3.1437 4.4418 28 16 -0.1974 -3.4647 3.4228 29 7 2.1683 -3.8899 2.4278 30 1 -0.4849 0.8400 -0.0004 31 1 -0.5992 -1.7590 -0.6153 32 1 -0.5290 -2.4861 1.0182 33 1 -0.3519 -3.8984 -1.6994 34 1 -1.3589 -4.3329 -0.2776 35 1 1.0242 -5.5924 -0.6757 36 1 0.5460 -5.0979 0.9814 37 1 4.5909 -4.1458 0.1686 38 1 5.9395 -4.4566 2.2337 39 1 4.7857 -4.3871 4.4313 40 1 2.6763 -4.1996 5.5922 41 1 -2.2488 -2.9288 8.8273 42 1 -2.5336 -2.9156 4.1078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585289042.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:56 Heat of formation + Delta-G solvation = 34.022678 kcal Electronic energy + Delta-G solvation = -30132.369861 eV Core-core repulsion = 26012.433045 eV Total energy + Delta-G solvation = -4119.936815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.104 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.45092 -40.24419 -38.77183 -37.43329 -36.02496 -35.57399 -32.76012 -32.11953 -30.95265 -29.53438 -29.04329 -27.19890 -25.90144 -24.68358 -23.72043 -22.87884 -21.83823 -20.20801 -20.20264 -19.49291 -18.94326 -17.78211 -17.23387 -16.66076 -16.49429 -15.91681 -15.80128 -15.73930 -15.34109 -14.90350 -14.82765 -14.52667 -13.87154 -13.60917 -13.54440 -13.35066 -12.93005 -12.73397 -12.19452 -11.98355 -11.92459 -11.75409 -11.52387 -11.44645 -11.26093 -11.01662 -10.89268 -10.72370 -10.55630 -10.15947 -10.05255 -9.92072 -9.66579 -9.59916 -9.49478 -9.20063 -8.98670 -8.67966 -8.58991 -7.49110 -6.94093 -5.73234 -3.14216 0.79913 1.39925 1.43777 1.50304 2.07920 2.13489 2.69918 3.34567 3.35478 3.37668 3.40564 3.42996 4.05187 4.38660 4.44952 4.81499 4.93436 5.18751 5.23074 5.39642 5.44930 5.49284 5.51960 5.55348 5.64321 5.74360 5.82305 5.95486 6.00914 6.18100 6.23906 6.35113 6.43314 6.45030 6.51435 6.59361 6.67290 6.85923 7.04738 7.11857 7.51681 7.57310 7.69344 7.80392 8.07184 8.28089 8.31325 9.13335 9.73313 10.35990 11.29444 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.008699 B = 0.004351 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.128168 B = 6433.285460 C = 7548.537051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.002 4.002 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.223 4.223 8 H 0.076 0.924 9 N -0.574 5.574 10 C 0.153 3.847 11 C -0.148 4.148 12 C -0.121 4.121 13 C 0.198 3.802 14 H 0.058 0.942 15 C 0.198 3.802 16 C -0.208 4.208 17 C -0.036 4.036 18 C -0.225 4.225 19 C 0.372 3.628 20 N -0.608 5.608 21 C 0.255 3.745 22 N -0.493 5.493 23 C 0.028 3.972 24 C 0.566 3.434 25 O -0.517 6.517 26 O -0.499 6.499 27 C -0.287 4.287 28 S 0.373 5.627 29 N -0.512 5.512 30 H 0.253 0.747 31 H 0.107 0.893 32 H 0.020 0.980 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.425 0.575 41 H 0.407 0.593 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.143 -11.812 6.487 14.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.199 4.199 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.296 5.296 10 C 0.028 3.972 11 C -0.187 4.187 12 C -0.159 4.159 13 C 0.088 3.912 14 H 0.076 0.924 15 C 0.057 3.943 16 C -0.230 4.230 17 C -0.062 4.062 18 C -0.250 4.250 19 C 0.139 3.861 20 N -0.240 5.240 21 C -0.115 4.115 22 N -0.217 5.217 23 C -0.106 4.106 24 C 0.408 3.592 25 O -0.406 6.406 26 O -0.308 6.308 27 C -0.432 4.432 28 S 0.627 5.373 29 N -0.228 5.228 30 H 0.064 0.936 31 H 0.125 0.875 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.148 0.852 40 H 0.265 0.735 41 H 0.264 0.736 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.521 -11.496 5.499 13.221 hybrid contribution 0.698 1.166 2.012 2.428 sum 4.219 -10.330 7.511 13.450 Atomic orbital electron populations 1.69800 1.04788 1.24805 1.56680 1.24722 0.95643 0.97541 1.01975 0.86100 0.78754 0.83920 0.77329 1.20564 1.21586 1.21810 1.19029 0.90403 0.82229 1.43482 0.90640 1.44581 1.01869 0.98556 1.84576 1.22066 0.83960 0.92814 0.98346 1.23031 0.96475 0.99110 1.00055 1.22584 0.95651 0.96644 1.01017 1.20131 0.92948 0.88271 0.89801 0.92431 1.22304 0.92102 0.87120 0.92763 1.21828 0.94949 1.06788 0.99471 1.21259 0.99755 0.93665 0.91512 1.21049 0.92334 1.12048 0.99557 1.18236 0.88537 0.94232 0.85092 1.40936 1.04548 1.71208 1.07303 1.24484 0.90688 1.01904 0.94455 1.67075 1.04693 1.21391 1.28504 1.18380 0.89601 1.11957 0.90652 1.19792 0.85213 0.72263 0.81915 1.90913 1.18108 1.45824 1.85728 1.84728 1.46548 1.83352 1.16205 1.27414 1.09625 1.07792 0.98396 1.86284 0.91206 1.58689 1.01075 1.65934 1.39514 1.19712 0.97655 0.93649 0.87513 0.96179 0.92104 0.92287 0.92140 0.91116 0.84885 0.84921 0.85211 0.73484 0.73586 0.79946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.15 10.09 55.49 0.56 -24.59 16 2 C 0.00 -0.07 5.49 -17.43 -0.10 -0.16 16 3 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.22 -5.70 9.95 -15.06 -0.15 -5.85 16 8 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.57 -12.99 3.12 -163.89 -0.51 -13.50 16 10 C 0.15 3.35 5.89 -2.53 -0.01 3.34 16 11 C -0.15 -2.55 7.08 -24.58 -0.17 -2.72 16 12 C -0.12 -1.91 6.43 -24.89 -0.16 -2.07 16 13 C 0.20 3.60 3.42 -68.11 -0.23 3.37 16 14 H 0.06 1.01 7.88 -51.93 -0.41 0.60 16 15 C 0.20 3.38 5.46 -82.61 -0.45 2.92 16 16 C -0.21 -2.96 9.71 -39.41 -0.38 -3.35 16 17 C -0.04 -0.43 10.17 -39.32 -0.40 -0.83 16 18 C -0.23 -2.79 9.94 -39.23 -0.39 -3.18 16 19 C 0.37 5.67 7.44 -154.86 -1.15 4.52 16 20 N -0.61 -8.76 5.54 -12.06 -0.07 -8.82 16 21 C 0.25 4.30 8.37 -87.78 -0.73 3.57 16 22 N -0.49 -8.62 10.62 -10.59 -0.11 -8.73 16 23 C 0.03 0.49 6.66 -84.64 -0.56 -0.07 16 24 C 0.57 9.14 8.31 34.29 0.28 9.42 16 25 O -0.52 -9.09 17.44 -19.32 -0.34 -9.43 16 26 O -0.50 -6.46 13.35 -40.82 -0.54 -7.01 16 27 C -0.29 -4.87 10.54 29.56 0.31 -4.56 16 28 S 0.37 6.51 18.35 -107.50 -1.97 4.53 16 29 N -0.51 -8.88 6.07 -8.63 -0.05 -8.93 16 30 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.11 2.70 5.87 -51.93 -0.31 2.40 16 32 H 0.02 0.46 6.37 -51.93 -0.33 0.13 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.13 7.34 -51.93 -0.38 0.75 16 37 H 0.13 1.65 7.95 -52.49 -0.42 1.24 16 38 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.43 4.85 8.82 -40.82 -0.36 4.49 16 41 H 0.41 2.97 9.11 45.56 0.42 3.39 16 42 H 0.18 2.86 7.99 -52.49 -0.42 2.44 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -32.23 368.31 -10.68 -42.91 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -3.87 Total: 7.18 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -4.30 Total: 4.35 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: -0.18 Total: -64.58 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.88 Total: -16.44 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 6.51 SS G_CDS: -1.97 Total: 4.53 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.23 -10.68 -42.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585289042.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.936 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds