Wall clock time and date at job start Tue Mar 31 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 120.00157 * 2 1 4 4 H 1.48501 * 109.46546 * 269.99838 * 3 2 1 5 5 H 1.48493 * 109.47124 * 29.99691 * 3 2 1 6 6 H 1.48498 * 109.47093 * 149.99936 * 3 2 1 7 7 C 1.37880 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00192 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.46904 * 110.99742 * 170.00193 * 10 9 7 12 12 C 1.53244 * 109.33717 * 187.25979 * 11 10 9 13 13 N 1.47078 * 108.52025 * 306.16597 * 12 11 10 14 14 C 1.34774 * 120.88580 * 231.19079 * 13 12 11 15 15 O 1.21581 * 120.00222 * 184.98784 * 14 13 12 16 16 N 1.34780 * 119.99633 * 4.71390 * 14 13 12 17 17 C 1.46503 * 119.99662 * 175.19700 * 16 14 13 18 18 C 1.53001 * 109.46836 * 180.02562 * 17 16 14 19 19 C 1.50697 * 109.47148 * 179.97438 * 18 17 16 20 20 C 1.38602 * 120.80281 * 269.72032 * 19 18 17 21 21 N 1.32324 * 119.10707 * 179.71819 * 20 19 18 22 22 C 1.31802 * 120.81697 * 0.56678 * 21 20 19 23 23 C 1.50700 * 119.12240 * 179.68432 * 22 21 20 24 24 C 1.53001 * 117.49905 * 8.64595 * 23 22 21 25 25 C 1.52999 * 117.50015 * 300.02053 * 23 22 21 26 26 N 1.31797 * 121.75582 * 359.70561 * 22 21 20 27 27 C 1.32336 * 120.81606 * 0.02562 * 26 22 21 28 28 C 1.47081 * 118.23549 * 51.46114 * 13 12 11 29 29 C 1.46897 * 111.00511 * 294.30409 * 10 9 7 30 30 H 0.96999 * 119.99180 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46973 * 59.99931 * 9 7 2 32 32 H 1.08998 * 109.47143 * 300.00526 * 9 7 2 33 33 H 1.08997 * 109.49477 * 67.29646 * 11 10 9 34 34 H 1.08997 * 109.49313 * 307.21133 * 11 10 9 35 35 H 1.09003 * 109.62633 * 186.46131 * 12 11 10 36 36 H 1.08993 * 109.62882 * 65.87882 * 12 11 10 37 37 H 0.96993 * 120.00011 * 355.19747 * 16 14 13 38 38 H 1.08996 * 109.46867 * 299.99425 * 17 16 14 39 39 H 1.08997 * 109.47602 * 60.00251 * 17 16 14 40 40 H 1.09002 * 109.47346 * 299.99738 * 18 17 16 41 41 H 1.08999 * 109.47423 * 59.99800 * 18 17 16 42 42 H 1.08001 * 120.44218 * 0.02562 * 20 19 18 43 43 H 1.08997 * 115.54971 * 154.35027 * 23 22 21 44 44 H 1.09000 * 117.49955 * 359.97438 * 24 23 22 45 45 H 1.08998 * 117.49714 * 145.02288 * 24 23 22 46 46 H 1.09000 * 117.49981 * 214.98145 * 25 23 22 47 47 H 1.09002 * 117.49875 * 0.02562 * 25 23 22 48 48 H 1.07996 * 120.45017 * 179.97438 * 27 26 22 49 49 H 1.09002 * 109.63018 * 68.24833 * 28 13 12 50 50 H 1.09001 * 109.63196 * 188.83157 * 28 13 12 51 51 H 1.08993 * 109.49068 * 292.70728 * 29 10 9 52 52 H 1.09000 * 109.49095 * 52.78808 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2056 -3.6157 0.0015 11 6 1.5212 -4.8934 0.2407 12 6 2.5639 -6.0031 0.4133 13 7 3.4609 -5.9867 -0.7522 14 6 3.7107 -7.1131 -1.4488 15 8 4.5237 -7.1012 -2.3527 16 7 3.0632 -8.2541 -1.1397 17 6 3.2554 -9.4511 -1.9622 18 6 2.4123 -10.5972 -1.3994 19 6 2.6095 -11.8284 -2.2458 20 6 1.7880 -12.0812 -3.3331 21 7 1.9946 -13.1697 -4.0566 22 6 2.9593 -14.0129 -3.7475 23 6 3.1562 -15.2443 -4.5936 24 6 2.3506 -15.3467 -5.8903 25 6 1.9880 -16.2274 -4.6928 26 7 3.7561 -13.8080 -2.7179 27 6 3.6127 -12.7384 -1.9519 28 6 4.0828 -4.7096 -1.1337 29 6 2.9758 -3.6498 -1.2489 30 1 -0.4849 0.8401 -0.0004 31 1 0.6240 -2.5575 -0.8880 32 1 0.6246 -2.5563 0.8919 33 1 0.8790 -5.1267 -0.6086 34 1 0.9167 -4.8186 1.1446 35 1 2.0633 -6.9693 0.4765 36 1 3.1401 -5.8259 1.3214 37 1 2.4700 -8.2826 -0.3728 38 1 2.9459 -9.2418 -2.9861 39 1 4.3078 -9.7344 -1.9513 40 1 2.7212 -10.8066 -0.3753 41 1 1.3599 -10.3137 -1.4107 42 1 0.9931 -11.3964 -3.5893 43 1 4.1642 -15.6589 -4.5929 44 1 1.6779 -14.5235 -6.1312 45 1 2.8286 -15.8287 -6.7431 46 1 2.2276 -17.2888 -4.7578 47 1 1.0770 -15.9833 -4.1465 48 1 4.2687 -12.5766 -1.1094 49 1 4.8023 -4.4105 -0.3714 50 1 4.5870 -4.8202 -2.0938 51 1 2.3133 -3.9003 -2.0774 52 1 3.4262 -2.6730 -1.4253 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601589972.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:49 Heat of formation + Delta-G solvation = 37.144111 kcal Electronic energy + Delta-G solvation = -30680.126000 eV Core-core repulsion = 26486.956520 eV Total energy + Delta-G solvation = -4193.169480 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.206 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.21960 -41.43122 -39.17179 -38.19246 -36.72704 -35.98091 -34.75005 -34.49634 -34.01235 -32.05097 -30.42993 -29.45078 -27.24747 -26.10421 -25.65892 -24.58004 -23.93156 -23.33567 -23.24726 -22.17233 -21.96783 -20.52524 -19.14363 -18.87552 -18.48450 -17.98091 -17.50152 -16.83241 -16.72286 -16.30491 -16.04740 -15.92301 -15.72429 -15.56795 -15.39157 -15.26707 -15.08341 -14.98908 -14.86450 -14.48718 -14.25514 -13.99831 -13.55983 -13.23713 -13.11525 -13.04289 -12.73343 -12.58953 -12.44786 -12.41828 -12.35695 -12.29522 -12.15944 -11.94883 -11.88087 -11.75021 -11.72922 -11.41142 -11.36661 -11.16366 -10.61201 -10.29006 -10.21814 -10.07976 -9.58966 -9.02431 -8.20214 -6.29628 -0.22247 0.08337 1.43179 1.43471 1.55088 1.58743 2.09432 2.41218 2.48185 2.78104 2.87619 3.00358 3.12600 3.24686 3.26305 3.63576 3.79600 3.80437 3.91236 3.95229 3.98662 4.05540 4.07645 4.09569 4.19424 4.27302 4.30778 4.42582 4.46150 4.57081 4.63002 4.73953 4.75235 4.76246 4.86683 4.93220 4.96212 5.01546 5.04097 5.07708 5.14570 5.18654 5.24503 5.28285 5.39896 5.45346 5.45582 5.64874 5.93186 5.96997 6.04820 6.27019 6.60293 6.86102 6.93853 7.06577 7.40267 7.50976 8.90739 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.027723 B = 0.001389 C = 0.001377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.749895 B =20156.053888 C =20328.505043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.524 4.524 8 H 0.065 0.935 9 C 0.209 3.791 10 N -0.538 5.538 11 C 0.036 3.964 12 C 0.127 3.873 13 N -0.629 5.629 14 C 0.704 3.296 15 O -0.637 6.637 16 N -0.731 5.731 17 C 0.146 3.854 18 C -0.066 4.066 19 C -0.186 4.186 20 C 0.148 3.852 21 N -0.535 5.535 22 C 0.327 3.673 23 C -0.123 4.123 24 C -0.149 4.149 25 C -0.145 4.145 26 N -0.538 5.538 27 C 0.150 3.850 28 C 0.145 3.855 29 C 0.057 3.943 30 H 0.264 0.736 31 H -0.042 1.042 32 H 0.012 0.988 33 H 0.019 0.981 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.087 0.913 37 H 0.412 0.588 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.190 0.810 43 H 0.133 0.867 44 H 0.097 0.903 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.086 0.914 48 H 0.194 0.806 49 H 0.079 0.921 50 H 0.083 0.917 51 H 0.009 0.991 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.354 -31.689 -2.687 31.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.194 4.194 3 Si 0.791 3.209 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.083 0.917 9 C 0.082 3.918 10 N -0.263 5.263 11 C -0.093 4.093 12 C 0.004 3.996 13 N -0.365 5.365 14 C 0.405 3.595 15 O -0.519 6.519 16 N -0.391 5.391 17 C 0.021 3.979 18 C -0.105 4.105 19 C -0.191 4.191 20 C -0.017 4.017 21 N -0.248 5.248 22 C 0.061 3.939 23 C -0.143 4.143 24 C -0.186 4.186 25 C -0.183 4.183 26 N -0.251 5.251 27 C -0.015 4.015 28 C 0.021 3.979 29 C -0.072 4.072 30 H 0.072 0.928 31 H -0.024 1.024 32 H 0.030 0.970 33 H 0.038 0.962 34 H 0.108 0.892 35 H 0.133 0.867 36 H 0.105 0.895 37 H 0.252 0.748 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.207 0.793 43 H 0.151 0.849 44 H 0.115 0.885 45 H 0.137 0.863 46 H 0.141 0.859 47 H 0.105 0.895 48 H 0.211 0.789 49 H 0.097 0.903 50 H 0.101 0.899 51 H 0.027 0.973 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.238 -32.321 -3.505 32.786 hybrid contribution -0.889 2.044 0.034 2.229 sum 3.349 -30.277 -3.471 30.659 Atomic orbital electron populations 1.70080 1.07679 1.27835 1.51846 1.25866 0.95681 1.03059 0.94843 0.85425 0.78703 0.78497 0.78265 1.20169 1.20850 1.18753 1.21481 0.93736 0.91045 1.49923 0.91685 1.19373 0.90013 0.88780 0.93598 1.61990 1.27107 1.03189 1.33997 1.22551 0.95844 0.89976 1.00927 1.21881 0.90827 0.98848 0.88023 1.47421 1.49804 1.07391 1.31920 1.15983 0.81007 0.81055 0.81440 1.90875 1.39738 1.85433 1.35847 1.45043 1.50241 1.09364 1.34402 1.21132 0.99980 0.82889 0.93859 1.20564 1.02294 0.88382 0.99238 1.21534 0.98608 0.99502 0.99426 1.23674 0.96846 0.92469 0.88761 1.68166 1.20544 1.04898 1.31210 1.22521 0.86792 0.94296 0.90251 1.20788 0.99311 0.93983 1.00175 1.23058 1.01887 1.02483 0.91192 1.23032 0.96565 0.97277 1.01420 1.68195 1.27985 1.22474 1.06482 1.23708 0.93936 0.87222 0.96668 1.21571 0.94230 0.80590 1.01478 1.22358 0.95440 0.99410 0.89984 0.92752 1.02430 0.96962 0.96224 0.89152 0.86732 0.89455 0.74840 0.93171 0.92546 0.87029 0.87505 0.79316 0.84944 0.88473 0.86313 0.85868 0.89526 0.78941 0.90310 0.89861 0.97263 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.10 13.29 21.45 0.28 -54.81 16 2 C 0.00 0.20 5.46 84.65 0.46 0.67 16 3 Si 0.97 43.48 29.54 68.60 2.03 45.51 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.52 -28.76 8.41 25.60 0.22 -28.55 16 8 H 0.06 3.49 7.13 -2.91 -0.02 3.47 16 9 C 0.21 10.66 4.72 85.56 0.40 11.07 16 10 N -0.54 -21.66 4.62 -898.90 -4.15 -25.81 16 11 C 0.04 1.10 5.62 86.38 0.49 1.58 16 12 C 0.13 2.74 6.59 86.35 0.57 3.31 16 13 N -0.63 -17.23 3.00 -835.04 -2.51 -19.74 16 14 C 0.70 19.49 8.31 179.05 1.49 20.98 16 15 O -0.64 -23.25 15.83 -3.97 -0.06 -23.31 16 16 N -0.73 -12.56 5.47 -478.54 -2.62 -15.18 16 17 C 0.15 2.14 5.66 86.38 0.49 2.63 16 18 C -0.07 -0.44 5.51 29.85 0.16 -0.27 16 19 C -0.19 -2.13 5.17 -19.69 -0.10 -2.23 16 20 C 0.15 2.06 11.01 84.71 0.93 3.00 16 21 N -0.53 -9.93 9.35 -187.84 -1.76 -11.69 16 22 C 0.33 6.27 7.31 138.75 1.01 7.28 16 23 C -0.12 -1.81 6.24 -11.54 -0.07 -1.89 16 24 C -0.15 -1.75 10.01 30.60 0.31 -1.45 16 25 C -0.14 -1.59 10.23 30.60 0.31 -1.28 16 26 N -0.54 -10.24 10.33 -187.84 -1.94 -12.18 16 27 C 0.15 2.04 11.01 84.70 0.93 2.98 16 28 C 0.15 4.61 6.61 86.50 0.57 5.18 16 29 C 0.06 2.19 5.47 86.54 0.47 2.66 16 30 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 31 H -0.04 -2.38 8.12 -2.39 -0.02 -2.40 16 32 H 0.01 0.67 7.97 -2.39 -0.02 0.65 16 33 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.09 2.58 7.99 -2.39 -0.02 2.57 16 35 H 0.11 1.44 5.64 -2.39 -0.01 1.42 16 36 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.41 4.31 5.97 -92.71 -0.55 3.75 16 38 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.11 0.29 8.10 -2.39 -0.02 0.27 16 41 H 0.11 0.38 8.10 -2.39 -0.02 0.36 16 42 H 0.19 1.65 8.06 -2.91 -0.02 1.62 16 43 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.10 1.41 7.54 -2.39 -0.02 1.40 16 45 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 49 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 50 H 0.08 2.75 7.09 -2.39 -0.02 2.73 16 51 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 52 H 0.08 3.26 6.67 -2.39 -0.02 3.24 16 Total: -1.00 -77.74 422.25 -1.70 -79.44 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.37 Total: 12.10 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: 8.65 Total: 25.67 kcal Atomic # 7 Polarization: -126.72 SS G_CDS: -12.69 Total: -139.41 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.06 Total: -23.31 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -77.74 -1.70 -79.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601589972.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.587 kcal (2) G-P(sol) polarization free energy of solvation -77.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds