Wall clock time and date at job start Tue Mar 31 2020 05:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47440 * 2 1 4 4 H 1.08994 * 109.47180 * 54.99960 * 3 2 1 5 5 C 1.50696 * 109.47051 * 175.00215 * 3 2 1 6 6 H 1.08003 * 120.00607 * 119.99847 * 5 3 2 7 7 C 1.37880 * 120.00184 * 299.99556 * 5 3 2 8 8 N 1.31518 * 119.99702 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00624 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46941 * 59.99618 * 9 7 5 11 11 H 1.48498 * 109.47480 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46950 * 299.99912 * 9 7 5 13 13 N 1.46504 * 109.46774 * 294.99634 * 3 2 1 14 14 C 1.34775 * 119.99565 * 84.99920 * 13 3 2 15 15 O 1.21275 * 120.00279 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99776 * 179.97438 * 14 13 3 17 17 S 1.81000 * 109.47042 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99871 * 180.02562 * 17 16 14 19 19 N 1.31275 * 125.80244 * 359.69109 * 18 17 16 20 20 C 1.34361 * 109.30263 * 179.83395 * 19 18 17 21 21 C 1.34387 * 108.34988 * 0.43133 * 20 19 18 22 22 N 1.36107 * 125.80449 * 179.97438 * 18 17 16 23 23 C 1.46506 * 126.50252 * 0.02562 * 22 18 17 24 24 C 1.50694 * 109.47106 * 85.00039 * 23 22 18 25 25 C 1.38242 * 120.00205 * 269.73233 * 24 23 22 26 26 C 1.38228 * 120.00262 * 179.76652 * 25 24 23 27 27 C 1.38240 * 119.99895 * 0.50437 * 26 25 24 28 28 C 1.38238 * 120.00007 * 359.74563 * 27 26 25 29 29 C 1.38229 * 120.00305 * 90.00004 * 24 23 22 30 30 H 1.08994 * 109.47418 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47114 * 300.00190 * 1 2 3 32 32 H 1.08999 * 109.46992 * 60.00271 * 1 2 3 33 33 H 1.08998 * 109.47277 * 239.99359 * 2 1 3 34 34 H 1.09009 * 109.46881 * 119.99677 * 2 1 3 35 35 H 0.96998 * 119.99863 * 179.97438 * 8 7 5 36 36 H 0.96993 * 120.00065 * 265.00152 * 13 3 2 37 37 H 1.09000 * 109.46904 * 60.00309 * 16 14 13 38 38 H 1.09005 * 109.47194 * 300.00350 * 16 14 13 39 39 H 1.08007 * 125.82740 * 180.17618 * 20 19 18 40 40 H 1.07995 * 126.52802 * 179.72540 * 21 20 19 41 41 H 1.08990 * 109.47370 * 205.00472 * 23 22 18 42 42 H 1.09008 * 109.46432 * 325.00203 * 23 22 18 43 43 H 1.07999 * 119.99620 * 359.97438 * 25 24 23 44 44 H 1.07999 * 120.00052 * 180.22963 * 26 25 24 45 45 H 1.08004 * 119.99959 * 179.72504 * 27 26 25 46 46 H 1.07995 * 120.00087 * 179.97438 * 28 27 26 47 47 H 1.08006 * 120.00150 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3375 2.1734 9 14 6.0049 0.8810 1.3818 10 1 6.4995 2.2812 1.3820 11 1 6.3978 0.2165 2.6504 12 1 6.5974 0.1469 0.2349 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3670 15 8 -0.3391 2.6327 -0.4343 16 6 0.0368 3.3385 -2.6546 17 16 -1.6417 3.9971 -2.4965 18 6 -1.8434 4.7079 -4.0961 19 7 -0.9481 4.7050 -5.0561 20 6 -1.4493 5.3336 -6.1327 21 6 -2.6920 5.7519 -5.8380 22 7 -2.9519 5.3581 -4.5445 23 6 -4.1871 5.5948 -3.7931 24 6 -4.0373 6.8418 -2.9603 25 6 -3.5482 6.7568 -1.6701 26 6 -3.4062 7.9012 -0.9079 27 6 -3.7631 9.1295 -1.4322 28 6 -4.2570 9.2140 -2.7205 29 6 -4.3940 8.0701 -3.4845 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.8292 -0.0609 2.9500 36 1 2.2720 2.1230 -1.9978 37 1 0.0681 2.6144 -3.4687 38 1 0.7283 4.1540 -2.8669 39 1 -0.9389 5.4815 -7.0730 40 1 -3.3597 6.2937 -6.4913 41 1 -5.0171 5.7198 -4.4883 42 1 -4.3843 4.7439 -3.1409 43 1 -3.2739 5.7966 -1.2588 44 1 -3.0207 7.8351 0.0988 45 1 -3.6563 10.0231 -0.8351 46 1 -4.5362 10.1735 -3.1300 47 1 -4.7806 8.1361 -4.4909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864057469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:51 Heat of formation + Delta-G solvation = 47.620500 kcal Electronic energy + Delta-G solvation = -28660.220671 eV Core-core repulsion = 24742.132506 eV Total energy + Delta-G solvation = -3918.088164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.93530 -39.45811 -39.03301 -35.12296 -34.83621 -32.47123 -31.34455 -31.21069 -31.16312 -29.82575 -29.10713 -26.70806 -26.64802 -23.06195 -22.96866 -22.28378 -21.53312 -21.35162 -20.37902 -19.38034 -18.17260 -17.16799 -16.95298 -16.11890 -15.99422 -15.77500 -15.40777 -15.29101 -15.10348 -14.82993 -14.38192 -14.14967 -13.91417 -13.72507 -13.44254 -13.33564 -13.22144 -12.87751 -12.81212 -12.64930 -12.58921 -11.81424 -11.62368 -11.43409 -11.35165 -11.24924 -11.00295 -10.82444 -10.53293 -10.34304 -10.20241 -10.17350 -9.82754 -9.64197 -9.42910 -9.19983 -9.18727 -9.15027 -9.06293 -8.51070 -7.89711 -7.36027 -6.13143 -4.22675 0.86987 1.11790 1.23499 1.80407 2.16847 2.74971 2.97699 3.25054 3.26532 3.31241 3.32834 3.56198 4.03399 4.21403 4.28203 4.36697 4.65569 4.68897 4.70544 4.86936 4.97179 5.15008 5.18022 5.20802 5.29019 5.30494 5.37275 5.47849 5.60535 5.63256 5.74391 5.97946 6.13000 6.23303 6.26103 6.39161 6.45545 6.58440 6.65172 6.67469 6.76660 7.03522 7.17401 7.33351 7.39750 7.59709 7.69952 7.79964 7.87718 8.16193 8.57996 8.73655 9.02826 9.44252 10.92140 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.002257 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.101140 B =12404.149583 C =13081.338225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.699 5.699 14 C 0.518 3.482 15 O -0.537 6.537 16 C -0.136 4.136 17 S 0.050 5.950 18 C 0.185 3.815 19 N -0.493 5.493 20 C -0.019 4.019 21 C -0.052 4.052 22 N -0.441 5.441 23 C 0.146 3.854 24 C -0.120 4.120 25 C -0.088 4.088 26 C -0.118 4.118 27 C -0.110 4.110 28 C -0.126 4.126 29 C -0.099 4.099 30 H 0.023 0.977 31 H 0.050 0.950 32 H 0.038 0.962 33 H 0.032 0.968 34 H 0.100 0.900 35 H 0.265 0.735 36 H 0.391 0.609 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.170 0.830 40 H 0.174 0.826 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.132 0.868 44 H 0.128 0.872 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.814 14.292 -13.807 26.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.347 5.347 14 C 0.301 3.699 15 O -0.416 6.416 16 C -0.288 4.288 17 S 0.279 5.721 18 C -0.186 4.186 19 N -0.215 5.215 20 C -0.168 4.168 21 C -0.186 4.186 22 N -0.127 5.127 23 C 0.024 3.976 24 C -0.121 4.121 25 C -0.107 4.107 26 C -0.136 4.136 27 C -0.128 4.128 28 C -0.144 4.144 29 C -0.118 4.118 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.224 0.776 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.187 0.813 40 H 0.191 0.809 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.150 0.850 44 H 0.146 0.854 45 H 0.141 0.859 46 H 0.140 0.860 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.406 13.752 -11.875 25.161 hybrid contribution 1.437 0.530 -1.672 2.268 sum -15.969 14.282 -13.547 25.347 Atomic orbital electron populations 1.21839 0.98280 0.98147 1.01219 1.21947 0.92665 0.99709 1.02394 1.18842 0.94292 0.89207 0.80647 0.93114 1.21189 0.90615 1.39209 1.06370 0.92059 1.24878 0.98629 0.94759 0.95348 1.69883 1.35241 1.37489 1.09327 0.86509 0.84810 0.78339 0.77458 1.20166 1.21131 1.20141 1.46421 1.14019 1.55411 1.18842 1.19450 0.83480 0.79604 0.87401 1.90702 1.51108 1.59926 1.39883 1.23752 0.97662 1.05142 1.02277 1.85875 1.18356 1.66515 1.01359 1.25710 0.86562 1.03880 1.02399 1.70815 1.28388 1.22247 1.00034 1.22265 0.93569 1.02465 0.98542 1.22740 1.00518 1.08782 0.86579 1.45581 1.13041 1.42542 1.11504 1.20772 0.84771 0.96908 0.95148 1.19895 1.02635 0.94421 0.95175 1.21308 0.96375 0.99667 0.93371 1.21255 0.99499 0.92360 1.00442 1.21270 0.97997 0.97883 0.95633 1.21115 1.00377 0.98236 0.94692 1.20973 0.99443 0.91974 0.99413 0.95781 0.93104 0.94305 0.94952 0.88197 0.92478 0.77607 0.86563 0.86501 0.81259 0.80888 0.87885 0.87842 0.84994 0.85369 0.85874 0.85958 0.86235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.52 37.15 0.32 -2.71 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.70 2.24 -69.08 -0.15 6.55 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.95 8.73 -34.44 -0.30 -14.25 16 6 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.46 11.29 55.43 0.63 -23.83 16 9 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.70 -14.18 5.02 -54.93 -0.28 -14.45 16 14 C 0.52 9.98 6.42 -10.98 -0.07 9.91 16 15 O -0.54 -11.94 13.00 5.56 0.07 -11.87 16 16 C -0.14 -2.10 5.68 36.01 0.20 -1.90 16 17 S 0.05 0.73 19.62 -107.50 -2.11 -1.38 16 18 C 0.18 2.57 7.96 -88.75 -0.71 1.86 16 19 N -0.49 -7.25 10.60 -13.45 -0.14 -7.40 16 20 C -0.02 -0.22 11.84 -17.80 -0.21 -0.43 16 21 C -0.05 -0.51 11.60 -16.28 -0.19 -0.70 16 22 N -0.44 -4.92 2.79 -118.21 -0.33 -5.25 16 23 C 0.15 1.25 6.05 -5.19 -0.03 1.21 16 24 C -0.12 -1.13 5.46 -104.63 -0.57 -1.70 16 25 C -0.09 -0.94 9.64 -39.58 -0.38 -1.32 16 26 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 27 C -0.11 -0.93 10.05 -39.58 -0.40 -1.33 16 28 C -0.13 -1.01 10.05 -39.58 -0.40 -1.40 16 29 C -0.10 -0.81 9.70 -39.59 -0.38 -1.20 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 32 H 0.04 0.83 5.65 -51.93 -0.29 0.53 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 2.65 5.95 -51.92 -0.31 2.34 16 35 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 36 H 0.39 6.94 8.54 -40.82 -0.35 6.60 16 37 H 0.12 1.67 8.14 -51.92 -0.42 1.25 16 38 H 0.12 1.72 8.14 -51.91 -0.42 1.29 16 39 H 0.17 1.54 8.06 -52.48 -0.42 1.11 16 40 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.10 0.59 8.08 -51.93 -0.42 0.17 16 42 H 0.10 0.88 7.84 -51.92 -0.41 0.47 16 43 H 0.13 1.48 6.82 -52.49 -0.36 1.12 16 44 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 46 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 47 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 LS Contribution 403.16 15.07 6.08 6.08 Total: -1.00 -31.94 403.16 -11.72 -43.66 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.71 Total: 9.44 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -3.91 Total: -10.48 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.12 Total: -50.93 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.07 Total: -11.87 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.11 Total: -1.38 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.94 -11.72 -43.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864057469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.279 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds