Wall clock time and date at job start Tue Mar 31 2020 05:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47220 * 2 1 4 4 H 1.09010 * 109.46928 * 305.69249 * 3 2 1 5 5 C 1.50704 * 109.47419 * 185.69616 * 3 2 1 6 6 H 1.08003 * 119.99305 * 275.00302 * 5 3 2 7 7 C 1.37874 * 120.00139 * 95.00289 * 5 3 2 8 8 N 1.31515 * 119.99846 * 184.83537 * 7 5 3 9 9 Si 1.86798 * 120.00098 * 4.82881 * 7 5 3 10 10 H 1.48501 * 109.47353 * 84.86472 * 9 7 5 11 11 H 1.48503 * 109.47211 * 204.86567 * 9 7 5 12 12 H 1.48503 * 109.47036 * 324.86284 * 9 7 5 13 13 N 1.46496 * 109.47344 * 65.68934 * 3 2 1 14 14 C 1.34774 * 120.00478 * 275.00467 * 13 3 2 15 15 O 1.21290 * 119.99700 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00437 * 179.97438 * 14 13 3 17 17 S 1.81001 * 109.47259 * 179.97438 * 16 14 13 18 18 C 1.76204 * 99.99722 * 179.97438 * 17 16 14 19 19 N 1.31269 * 125.80523 * 359.69752 * 18 17 16 20 20 C 1.34366 * 109.30317 * 179.83016 * 19 18 17 21 21 C 1.34384 * 108.34524 * 0.42918 * 20 19 18 22 22 N 1.36115 * 125.80081 * 179.97438 * 18 17 16 23 23 C 1.46505 * 126.50306 * 359.97438 * 22 18 17 24 24 C 1.50693 * 109.47268 * 84.99210 * 23 22 18 25 25 C 1.38236 * 120.00282 * 269.73177 * 24 23 22 26 26 C 1.38234 * 119.99559 * 179.76662 * 25 24 23 27 27 C 1.38240 * 120.00534 * 0.50268 * 26 25 24 28 28 C 1.38232 * 119.99661 * 359.74923 * 27 26 25 29 29 C 1.38233 * 119.99939 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.47503 * 60.00067 * 1 2 3 31 31 H 1.09000 * 109.46870 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46911 * 299.99730 * 1 2 3 33 33 H 1.09003 * 109.47374 * 240.00005 * 2 1 3 34 34 H 1.08996 * 109.47503 * 119.99933 * 2 1 3 35 35 H 0.96996 * 119.99702 * 180.02562 * 8 7 5 36 36 H 0.97005 * 119.99519 * 94.99999 * 13 3 2 37 37 H 1.09008 * 109.47231 * 300.00125 * 16 14 13 38 38 H 1.09008 * 109.47195 * 59.99680 * 16 14 13 39 39 H 1.08000 * 125.82270 * 180.14872 * 20 19 18 40 40 H 1.08002 * 126.51838 * 179.72416 * 21 20 19 41 41 H 1.08999 * 109.46968 * 205.00060 * 23 22 18 42 42 H 1.09005 * 109.46879 * 324.99549 * 23 22 18 43 43 H 1.07990 * 120.00042 * 359.97438 * 25 24 23 44 44 H 1.08002 * 119.99977 * 180.22750 * 26 25 24 45 45 H 1.07999 * 120.00066 * 179.72545 * 27 26 25 46 46 H 1.07993 * 120.00118 * 179.97438 * 28 27 26 47 47 H 1.08004 * 120.00254 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8347 5 6 3.5404 1.4449 -0.1410 6 1 4.1651 1.3334 0.7330 7 6 4.1157 1.5894 -1.3857 8 7 5.4204 1.4964 -1.5218 9 14 3.0418 1.9171 -2.8786 10 1 2.7753 3.3740 -2.9865 11 1 3.7401 1.4495 -4.1029 12 1 1.7562 1.1882 -2.7331 13 7 1.6667 2.0925 1.2587 14 6 0.4509 2.6589 1.3900 15 8 -0.3342 2.6308 0.4659 16 6 0.0667 3.3270 2.6850 17 16 -1.6134 3.9864 2.5485 18 6 -1.7973 4.6896 4.1536 19 7 -0.8957 4.6723 5.1076 20 6 -1.3808 5.3059 6.1887 21 6 -2.6265 5.7255 5.9095 22 7 -2.9005 5.3386 4.6170 23 6 -4.1434 5.5800 3.8799 24 6 -5.0435 4.3779 4.0055 25 6 -4.9681 3.3578 3.0757 26 6 -5.7904 2.2529 3.1938 27 6 -6.6954 2.1730 4.2357 28 6 -6.7744 3.1955 5.1625 29 6 -5.9481 4.2977 5.0477 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 5.8251 1.5984 -2.3974 36 1 2.2947 2.1151 1.9977 37 1 0.1070 2.5990 3.4954 38 1 0.7605 4.1415 2.8935 39 1 -0.8601 5.4490 7.1240 40 1 -3.2872 6.2638 6.5730 41 1 -4.6460 6.4550 4.2919 42 1 -3.9143 5.7541 2.8285 43 1 -4.2644 3.4224 2.2591 44 1 -5.7290 1.4541 2.4695 45 1 -7.3410 1.3118 4.3254 46 1 -7.4817 3.1334 5.9763 47 1 -6.0101 5.0969 5.7716 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864057477.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:55 Heat of formation + Delta-G solvation = 47.028572 kcal Electronic energy + Delta-G solvation = -28806.468269 eV Core-core repulsion = 24888.354437 eV Total energy + Delta-G solvation = -3918.113832 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.141 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.96475 -39.50089 -39.19513 -35.26513 -34.87197 -32.44201 -31.77752 -31.29044 -31.25116 -29.89484 -29.21484 -27.23393 -26.68348 -23.02434 -22.84719 -22.32631 -21.57356 -21.41209 -20.51533 -19.60497 -18.21620 -17.29674 -17.12513 -16.18194 -16.04331 -15.96755 -15.61340 -15.43832 -15.18834 -14.88798 -14.36948 -14.08887 -13.93810 -13.76401 -13.56649 -13.37434 -13.33757 -13.05965 -12.86379 -12.75082 -12.66177 -12.04380 -11.90053 -11.77708 -11.65978 -11.39687 -10.96632 -10.71634 -10.69581 -10.56937 -10.22502 -10.02390 -9.86080 -9.85660 -9.46360 -9.33405 -9.24302 -9.21362 -9.19205 -8.72311 -8.09088 -7.40542 -6.25353 -4.29305 0.82800 1.07338 1.18528 1.77490 2.11296 2.71558 2.95235 3.12530 3.25951 3.33439 3.40300 3.51959 3.92451 4.17958 4.24403 4.30956 4.62609 4.65078 4.66634 4.82258 4.93777 5.06054 5.13022 5.16518 5.23406 5.26045 5.31516 5.45314 5.55557 5.58806 5.69960 5.94798 6.04063 6.07511 6.08780 6.18962 6.21415 6.23008 6.55992 6.62206 6.63051 6.73708 6.76615 6.93227 6.98069 7.25700 7.31143 7.51236 7.77208 8.06702 8.49782 8.74091 8.85694 9.36187 10.86218 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.014500 B = 0.002462 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.634972 B =11368.321995 C =12483.426665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.238 3.762 4 H 0.053 0.947 5 C -0.531 4.531 6 H 0.079 0.921 7 C 0.082 3.918 8 N -0.887 5.887 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.693 5.693 14 C 0.518 3.482 15 O -0.542 6.542 16 C -0.136 4.136 17 S 0.048 5.952 18 C 0.184 3.816 19 N -0.491 5.491 20 C -0.018 4.018 21 C -0.051 4.051 22 N -0.441 5.441 23 C 0.146 3.854 24 C -0.120 4.120 25 C -0.089 4.089 26 C -0.118 4.118 27 C -0.110 4.110 28 C -0.126 4.126 29 C -0.099 4.099 30 H 0.050 0.950 31 H 0.030 0.970 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.268 0.732 36 H 0.396 0.604 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.171 0.829 40 H 0.174 0.826 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.132 0.868 44 H 0.128 0.872 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.565 7.058 15.018 28.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.135 3.865 4 H 0.070 0.930 5 C -0.569 4.569 6 H 0.098 0.902 7 C -0.123 4.123 8 N -0.523 5.523 9 Si 0.699 3.301 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.342 5.342 14 C 0.301 3.699 15 O -0.422 6.422 16 C -0.288 4.288 17 S 0.277 5.723 18 C -0.186 4.186 19 N -0.214 5.214 20 C -0.168 4.168 21 C -0.186 4.186 22 N -0.127 5.127 23 C 0.024 3.976 24 C -0.121 4.121 25 C -0.108 4.108 26 C -0.136 4.136 27 C -0.128 4.128 28 C -0.144 4.144 29 C -0.118 4.118 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.230 0.770 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.188 0.812 40 H 0.191 0.809 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.150 0.850 44 H 0.146 0.854 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -24.001 6.667 13.140 28.163 hybrid contribution 0.029 0.649 0.982 1.178 sum -23.972 7.316 14.122 28.768 Atomic orbital electron populations 1.21908 0.97373 0.98935 1.02033 1.22077 0.93698 0.99326 1.01348 1.19229 0.95615 0.89140 0.82484 0.92967 1.21004 0.88589 1.51813 0.95529 0.90250 1.24939 0.94882 0.93636 0.98816 1.69880 1.09771 1.48104 1.24548 0.86912 0.81286 0.79684 0.82211 1.19812 1.21197 1.18281 1.46559 1.13820 1.55294 1.18513 1.19578 0.83434 0.79442 0.87485 1.90694 1.50578 1.60098 1.40802 1.23747 0.97780 1.05307 1.01987 1.85842 1.17723 1.67508 1.01245 1.25668 0.86766 1.03776 1.02372 1.70815 1.28596 1.21856 1.00110 1.22272 0.93757 1.02264 0.98488 1.22747 1.00113 1.09059 0.86642 1.45577 1.12220 1.43062 1.11809 1.20774 0.82022 0.96459 0.98368 1.19900 0.98141 0.96863 0.97178 1.21296 0.97863 0.92963 0.98631 1.21243 0.95774 0.98120 0.98461 1.21265 0.98318 0.98578 0.94627 1.21117 0.99651 0.94190 0.99422 1.20983 0.95489 0.98345 0.96952 0.93055 0.95042 0.93167 0.91992 0.92924 0.92191 0.77012 0.86411 0.86264 0.81211 0.80858 0.87861 0.87859 0.85041 0.85432 0.85875 0.85932 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.53 37.16 0.32 -2.51 16 2 C -0.13 -2.66 5.59 -26.73 -0.15 -2.81 16 3 C 0.24 5.47 1.89 -69.08 -0.13 5.34 16 4 H 0.05 1.32 4.73 -51.92 -0.25 1.07 16 5 C -0.53 -14.01 9.05 -34.44 -0.31 -14.32 16 6 H 0.08 2.21 8.06 -52.48 -0.42 1.79 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 8 N -0.89 -25.89 13.96 55.43 0.77 -25.12 16 9 Si 0.87 21.30 26.99 -169.99 -4.59 16.71 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.26 -6.18 6.82 56.52 0.39 -5.79 16 13 N -0.69 -13.50 5.03 -54.93 -0.28 -13.77 16 14 C 0.52 9.53 6.45 -10.99 -0.07 9.46 16 15 O -0.54 -11.42 13.01 5.55 0.07 -11.35 16 16 C -0.14 -2.03 5.68 36.00 0.20 -1.83 16 17 S 0.05 0.67 19.62 -107.50 -2.11 -1.44 16 18 C 0.18 2.51 7.96 -88.75 -0.71 1.80 16 19 N -0.49 -7.12 10.60 -13.45 -0.14 -7.27 16 20 C -0.02 -0.21 11.84 -17.80 -0.21 -0.42 16 21 C -0.05 -0.49 11.60 -16.29 -0.19 -0.68 16 22 N -0.44 -4.80 2.79 -118.21 -0.33 -5.13 16 23 C 0.15 1.20 6.05 -5.19 -0.03 1.17 16 24 C -0.12 -1.08 5.46 -104.63 -0.57 -1.65 16 25 C -0.09 -0.89 9.64 -39.58 -0.38 -1.27 16 26 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 27 C -0.11 -0.88 10.05 -39.58 -0.40 -1.28 16 28 C -0.13 -0.95 10.05 -39.59 -0.40 -1.35 16 29 C -0.10 -0.78 9.70 -39.58 -0.38 -1.16 16 30 H 0.05 1.06 7.89 -51.93 -0.41 0.65 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.97 5.63 -51.93 -0.29 0.68 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.40 6.87 8.59 -40.82 -0.35 6.52 16 37 H 0.12 1.63 8.14 -51.91 -0.42 1.21 16 38 H 0.12 1.70 8.14 -51.91 -0.42 1.28 16 39 H 0.17 1.52 8.06 -52.49 -0.42 1.09 16 40 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 42 H 0.10 0.85 7.84 -51.93 -0.41 0.44 16 43 H 0.13 1.40 6.81 -52.49 -0.36 1.04 16 44 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 46 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 47 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 LS Contribution 403.07 15.07 6.07 6.07 Total: -1.00 -32.88 403.07 -11.14 -44.02 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -6.71 Total: 8.11 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -3.91 Total: -10.83 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.03 Total: -51.29 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.07 Total: -11.35 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.59 Total: 16.71 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.11 Total: -1.44 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.88 -11.14 -44.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864057477.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.045 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds