Wall clock time and date at job start Tue Mar 31 2020 06:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35995 * 117.00086 * 2 1 4 4 C 1.38571 * 120.07362 * 0.27423 * 3 2 1 5 5 C 1.38239 * 119.99761 * 180.25995 * 4 3 2 6 6 C 1.38257 * 120.14601 * 359.48536 * 5 4 3 7 7 C 1.50703 * 119.92766 * 180.25777 * 6 5 4 8 8 N 1.46498 * 109.47170 * 89.99776 * 7 6 5 9 9 C 1.39509 * 120.00163 * 179.97438 * 8 7 6 10 10 N 1.30951 * 126.08074 * 359.69590 * 9 8 7 11 11 N 1.39920 * 108.86393 * 179.84566 * 10 9 8 12 12 H 0.97004 * 125.66788 * 180.17744 * 11 10 9 13 13 C 1.34134 * 108.66314 * 0.42520 * 11 10 9 14 14 C 1.38143 * 107.55008 * 359.75202 * 13 11 10 15 15 C 1.47188 * 126.45796 * 179.97438 * 14 13 11 16 16 N 1.34776 * 120.00261 * 0.02562 * 15 14 13 17 17 O 1.21634 * 120.00246 * 180.02562 * 15 14 13 18 18 C 1.38238 * 120.14915 * 0.23646 * 6 5 4 19 19 C 1.38573 * 119.99829 * 0.02562 * 18 6 5 20 20 O 1.35990 * 120.07504 * 179.97438 * 19 18 6 21 21 C 1.42903 * 116.99896 * 359.97438 * 20 19 18 22 22 C 1.53001 * 109.47310 * 180.02562 * 21 20 19 23 23 C 1.50691 * 109.47227 * 180.02562 * 22 21 20 24 24 H 1.08002 * 120.00458 * 359.97438 * 23 22 21 25 25 C 1.37879 * 119.99950 * 180.02562 * 23 22 21 26 26 N 1.31515 * 120.00126 * 180.02562 * 25 23 22 27 27 Si 1.86803 * 119.99966 * 359.97438 * 25 23 22 28 28 H 1.48494 * 109.46898 * 90.00484 * 27 25 23 29 29 H 1.48500 * 109.47034 * 210.00608 * 27 25 23 30 30 H 1.48501 * 109.47025 * 330.00188 * 27 25 23 31 31 H 1.09005 * 109.46786 * 300.00154 * 1 2 3 32 32 H 1.08999 * 109.46930 * 59.99913 * 1 2 3 33 33 H 1.08996 * 109.47508 * 180.02562 * 1 2 3 34 34 H 1.08000 * 119.99904 * 359.97438 * 4 3 2 35 35 H 1.08002 * 119.92910 * 179.77110 * 5 4 3 36 36 H 1.08993 * 109.47074 * 210.00598 * 7 6 5 37 37 H 1.09002 * 109.46722 * 330.00479 * 7 6 5 38 38 H 0.97007 * 119.99968 * 0.02562 * 8 7 6 39 39 H 1.08004 * 126.22436 * 179.73314 * 13 11 10 40 40 H 0.97009 * 119.99888 * 0.02562 * 16 15 14 41 41 H 0.97000 * 120.00784 * 180.02562 * 16 15 14 42 42 H 1.07994 * 120.00357 * 179.97438 * 18 6 5 43 43 H 1.09005 * 109.46993 * 300.00383 * 21 20 19 44 44 H 1.08996 * 109.46974 * 60.00559 * 21 20 19 45 45 H 1.08994 * 109.46577 * 300.00189 * 22 21 20 46 46 H 1.09001 * 109.47111 * 59.99583 * 22 21 20 47 47 H 0.96994 * 120.00144 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3748 0.0057 5 6 1.9225 3.6057 0.0003 6 6 3.3031 3.6798 -0.0001 7 6 3.9839 5.0243 -0.0002 8 7 4.2049 5.4598 1.3810 9 6 4.8251 6.6832 1.6359 10 7 5.2602 7.5295 0.7363 11 7 5.8151 8.6366 1.3876 12 1 6.2072 9.4103 0.9534 13 6 5.7196 8.4476 2.7121 14 6 5.1020 7.2288 2.9156 15 6 4.7904 6.6124 4.2154 16 7 5.1136 7.2495 5.3582 17 8 4.2413 5.5279 4.2581 18 6 4.0604 2.5233 -0.0001 19 6 3.4360 1.2862 -0.0001 20 8 4.1795 0.1476 -0.0005 21 6 5.6003 0.3005 -0.0015 22 6 6.2618 -1.0791 -0.0026 23 6 7.7601 -0.9178 -0.0030 24 1 8.1970 0.0699 -0.0030 25 6 8.5733 -2.0312 -0.0044 26 7 9.8809 -1.8905 -0.0043 27 14 7.8178 -3.7396 -0.0052 28 1 7.6167 -4.1913 -1.4054 29 1 8.7270 -4.6832 0.6936 30 1 6.5092 -3.7025 0.6959 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 0.2147 2.3197 0.0098 35 1 1.3343 4.5116 0.0010 36 1 4.9417 4.9464 -0.5144 37 1 3.3538 5.7505 -0.5137 38 1 3.9207 4.8972 2.1183 39 1 6.0635 9.1250 3.4799 40 1 5.5513 8.1145 5.3242 41 1 4.9087 6.8431 6.2148 42 1 5.1386 2.5839 -0.0008 43 1 5.9059 0.8503 -0.8918 44 1 5.9072 0.8502 0.8882 45 1 5.9562 -1.6291 0.8874 46 1 5.9549 -1.6286 -0.8925 47 1 10.4530 -2.6737 -0.0049 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952877784.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:32 Heat of formation + Delta-G solvation = -13.348202 kcal Electronic energy + Delta-G solvation = -31091.341447 eV Core-core repulsion = 26662.430699 eV Total energy + Delta-G solvation = -4428.910747 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.163 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.50943 -40.37880 -38.94103 -38.21936 -37.45687 -35.45112 -33.84231 -33.28323 -31.71869 -30.88824 -30.28929 -29.87574 -29.34411 -27.46213 -25.50880 -24.97592 -23.65500 -22.25768 -21.59131 -20.76650 -20.43577 -20.23765 -18.93891 -18.28724 -17.21508 -16.84338 -16.56748 -16.49466 -16.27639 -15.94649 -15.77791 -15.47620 -15.34091 -15.04758 -14.53496 -14.30570 -14.25802 -14.16396 -13.90842 -13.78644 -13.48366 -13.22764 -12.75442 -12.72186 -12.32548 -12.02457 -11.71440 -11.56212 -11.15648 -11.07869 -10.92480 -10.84138 -10.75090 -10.73080 -10.16177 -10.11984 -9.92503 -9.89184 -9.74622 -9.27626 -9.13361 -8.59669 -8.56279 -7.94663 -7.56604 -6.07756 -4.08067 1.22489 1.30807 1.52733 2.30729 2.42584 3.27710 3.33944 3.36151 3.36980 3.40652 3.48071 3.54717 3.75973 3.93516 4.33844 4.45130 4.59791 4.72712 4.82219 5.00631 5.08522 5.13656 5.14009 5.17990 5.26654 5.28900 5.43304 5.48321 5.56384 5.60898 5.80038 5.83612 6.00228 6.01548 6.25862 6.29668 6.51152 6.57630 6.65931 6.74423 6.79294 7.07276 7.08672 7.13912 7.31535 7.36658 7.38591 7.69729 7.95580 8.01578 8.17436 8.45156 8.93417 9.52915 11.04831 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.007158 B = 0.002640 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3910.895080 B =10605.471524 C =13078.532692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.303 6.303 3 C 0.098 3.902 4 C -0.177 4.177 5 C -0.106 4.106 6 C -0.106 4.106 7 C 0.179 3.821 8 N -0.697 5.697 9 C 0.397 3.603 10 N -0.358 5.358 11 N -0.453 5.453 12 H 0.444 0.556 13 C 0.127 3.873 14 C -0.332 4.332 15 C 0.600 3.400 16 N -0.857 5.857 17 O -0.549 6.549 18 C -0.155 4.155 19 C 0.117 3.883 20 O -0.307 6.307 21 C 0.071 3.929 22 C -0.008 4.008 23 C -0.525 4.525 24 H 0.074 0.926 25 C 0.072 3.928 26 N -0.899 5.899 27 Si 0.880 3.120 28 H -0.275 1.275 29 H -0.286 1.286 30 H -0.262 1.262 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.132 0.868 35 H 0.124 0.876 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.424 0.576 39 H 0.183 0.817 40 H 0.396 0.604 41 H 0.403 0.597 42 H 0.140 0.860 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.028 0.972 46 H 0.023 0.977 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.819 24.742 5.968 29.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.216 6.216 3 C 0.052 3.948 4 C -0.196 4.196 5 C -0.125 4.125 6 C -0.107 4.107 7 C 0.055 3.945 8 N -0.340 5.340 9 C 0.135 3.865 10 N -0.195 5.195 11 N -0.156 5.156 12 H 0.289 0.711 13 C -0.030 4.030 14 C -0.351 4.351 15 C 0.387 3.613 16 N -0.420 5.420 17 O -0.427 6.427 18 C -0.174 4.174 19 C 0.070 3.930 20 O -0.221 6.221 21 C -0.003 4.003 22 C -0.045 4.045 23 C -0.562 4.562 24 H 0.092 0.908 25 C -0.130 4.130 26 N -0.537 5.537 27 Si 0.707 3.293 28 H -0.201 1.201 29 H -0.212 1.212 30 H -0.186 1.186 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.150 0.850 35 H 0.142 0.858 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.265 0.735 39 H 0.200 0.800 40 H 0.224 0.776 41 H 0.234 0.766 42 H 0.158 0.842 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.046 0.954 46 H 0.042 0.958 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.868 23.701 4.390 28.858 hybrid contribution -0.027 -0.154 1.301 1.310 sum -15.895 23.547 5.691 28.974 Atomic orbital electron populations 1.23031 0.79112 1.03761 1.00896 1.86234 1.20533 1.25987 1.88875 1.18369 0.89402 0.85099 1.01892 1.20946 0.99617 0.91447 1.07609 1.20627 0.93526 0.96911 1.01442 1.19436 0.93409 0.93862 1.03977 1.20087 0.99743 0.91721 0.82938 1.44173 1.64711 1.16787 1.08331 1.19098 0.90457 0.87551 0.89346 1.77452 1.27213 0.97702 1.17103 1.45662 1.47550 1.18311 1.04083 0.71131 1.22955 0.95911 0.96379 0.87735 1.19876 1.21964 0.99842 0.93401 1.17196 0.77046 0.83952 0.83089 1.43628 1.65318 1.24561 1.08474 1.90797 1.43507 1.21078 1.87350 1.21110 1.00916 0.90465 1.04915 1.18361 0.88411 0.86935 0.99327 1.86229 1.20885 1.27444 1.87536 1.23097 0.74799 1.02018 1.00411 1.19565 0.95856 0.91174 0.97934 1.20852 0.88008 0.95284 1.52105 0.90752 1.24925 0.94656 0.99270 0.94149 1.69895 1.03059 1.30347 1.50429 0.86764 0.79760 0.84061 0.78759 1.20080 1.21238 1.18648 0.92916 0.92938 0.88416 0.85030 0.85839 0.91162 0.91330 0.73473 0.79989 0.77644 0.76586 0.84217 0.92590 0.92513 0.95374 0.95823 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.30 -4.88 10.28 -34.23 -0.35 -5.23 16 3 C 0.10 1.59 6.70 -39.12 -0.26 1.33 16 4 C -0.18 -2.29 9.04 -39.46 -0.36 -2.65 16 5 C -0.11 -1.32 9.69 -39.57 -0.38 -1.70 16 6 C -0.11 -1.46 5.25 -104.61 -0.55 -2.01 16 7 C 0.18 2.25 6.15 -5.19 -0.03 2.22 16 8 N -0.70 -9.37 5.73 -61.03 -0.35 -9.72 16 9 C 0.40 5.06 7.88 -154.69 -1.22 3.84 16 10 N -0.36 -4.21 12.30 31.57 0.39 -3.82 16 11 N -0.45 -3.14 7.27 30.85 0.22 -2.91 16 12 H 0.44 1.42 8.96 -182.73 -1.64 -0.22 16 13 C 0.13 0.73 11.51 -16.58 -0.19 0.54 16 14 C -0.33 -3.42 6.14 -104.92 -0.64 -4.07 16 15 C 0.60 6.62 8.08 -12.63 -0.10 6.52 16 16 N -0.86 -5.13 8.86 30.38 0.27 -4.86 16 17 O -0.55 -8.50 16.03 5.25 0.08 -8.41 16 18 C -0.15 -2.52 8.69 -39.46 -0.34 -2.86 16 19 C 0.12 2.14 6.70 -39.12 -0.26 1.88 16 20 O -0.31 -6.57 9.92 -34.21 -0.34 -6.90 16 21 C 0.07 1.55 4.68 37.16 0.17 1.73 16 22 C -0.01 -0.20 4.41 -27.89 -0.12 -0.32 16 23 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16 24 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 25 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 26 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16 27 Si 0.88 22.27 27.47 -169.99 -4.67 17.60 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 31 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 32 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.13 1.31 6.30 -52.49 -0.33 0.97 16 35 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 37 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 38 H 0.42 6.27 6.72 -40.82 -0.27 6.00 16 39 H 0.18 0.06 7.46 -52.48 -0.39 -0.33 16 40 H 0.40 0.88 7.75 -40.82 -0.32 0.56 16 41 H 0.40 2.14 8.93 -40.82 -0.36 1.77 16 42 H 0.14 2.30 6.30 -52.49 -0.33 1.97 16 43 H 0.06 1.17 7.66 -51.93 -0.40 0.77 16 44 H 0.06 1.21 7.66 -51.93 -0.40 0.81 16 45 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 46 H 0.02 0.60 7.57 -51.93 -0.39 0.20 16 47 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 398.93 15.07 6.01 6.01 Total: -1.00 -39.26 398.93 -8.97 -48.22 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.28 Total: 5.02 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -3.73 Total: -7.85 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 1.31 Total: -48.46 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.61 Total: -20.55 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -39.26 -8.97 -48.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952877784.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.874 kcal (2) G-P(sol) polarization free energy of solvation -39.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds