Wall clock time and date at job start Tue Mar 31 2020 05:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35945 * 117.00169 * 2 1 4 4 C 1.38273 * 121.64294 * 180.26116 * 3 2 1 5 5 C 1.35049 * 114.72524 * 180.19948 * 4 3 2 6 6 S 1.76207 * 127.19926 * 179.84183 * 5 4 3 7 7 O 1.42095 * 106.39918 * 336.16826 * 6 5 4 8 8 O 1.42098 * 106.40181 * 203.25033 * 6 5 4 9 9 N 1.65597 * 107.21624 * 89.70884 * 6 5 4 10 10 C 1.46506 * 120.00079 * 90.00391 * 9 6 5 11 11 C 1.50701 * 109.46970 * 264.72396 * 10 9 6 12 12 H 1.08005 * 119.99694 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00052 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00074 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00171 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47010 * 90.00165 * 15 13 11 17 17 H 1.48496 * 109.47338 * 210.00715 * 15 13 11 18 18 H 1.48504 * 109.46968 * 330.00328 * 15 13 11 19 19 C 1.46499 * 119.99926 * 269.72430 * 9 6 5 20 20 C 1.53001 * 109.47277 * 265.27680 * 19 9 6 21 21 F 1.39897 * 109.47087 * 59.99788 * 20 19 9 22 22 F 1.39898 * 109.47123 * 180.02562 * 20 19 9 23 23 F 1.39904 * 109.46986 * 300.00127 * 20 19 9 24 24 S 1.72030 * 105.60450 * 359.58264 * 5 4 3 25 25 N 1.30348 * 121.64151 * 359.97438 * 3 2 1 26 26 H 1.09003 * 109.47271 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47169 * 300.00206 * 1 2 3 28 28 H 1.09000 * 109.46842 * 59.99681 * 1 2 3 29 29 H 1.07997 * 122.63423 * 0.02679 * 4 3 2 30 30 H 1.08999 * 109.46864 * 24.71745 * 10 9 6 31 31 H 1.08999 * 109.46950 * 144.72128 * 10 9 6 32 32 H 0.97000 * 120.00214 * 179.97438 * 14 13 11 33 33 H 1.08991 * 109.47463 * 25.27752 * 19 9 6 34 34 H 1.09000 * 109.46878 * 145.27981 * 19 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4244 1.3232 -0.0054 5 6 3.8882 2.5915 -0.0004 6 16 5.5722 3.1101 -0.0009 7 8 6.3235 2.0339 0.5436 8 8 5.5880 4.4226 0.5432 9 7 6.0402 3.2539 -1.5829 10 6 5.8740 4.5301 -2.2828 11 6 4.5764 4.5173 -3.0492 12 1 3.9396 3.6456 -3.0183 13 6 4.2029 5.6180 -3.7907 14 7 3.0703 5.6071 -4.4591 15 14 5.3047 7.1255 -3.8447 16 1 6.2609 6.9995 -4.9739 17 1 4.4722 8.3406 -4.0341 18 1 6.0568 7.2349 -2.5689 19 6 6.6262 2.1067 -2.2805 20 6 8.1519 2.1837 -2.1968 21 9 8.5468 2.1648 -0.8548 22 9 8.7115 1.0885 -2.8635 23 9 8.5926 3.3687 -2.7959 24 16 2.4909 3.5951 -0.0008 25 7 1.3679 2.3244 -0.0005 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 4.0784 0.4638 -0.0102 30 1 5.8592 5.3433 -1.5571 31 1 6.7034 4.6756 -2.9749 32 1 2.8073 6.3816 -4.9804 33 1 6.2829 1.1835 -1.8139 34 1 6.3185 2.1215 -3.3261 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952882030.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:41 Heat of formation + Delta-G solvation = -205.972946 kcal Electronic energy + Delta-G solvation = -29255.855577 eV Core-core repulsion = 24415.140041 eV Total energy + Delta-G solvation = -4840.715536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.026 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.79579 -47.34387 -47.24230 -40.09932 -37.15270 -36.64049 -36.41057 -35.70653 -32.74406 -31.38264 -29.77977 -28.02870 -27.02869 -24.38447 -23.26248 -22.15922 -21.06343 -19.17469 -18.71729 -18.26541 -18.23197 -17.76380 -17.30416 -17.06503 -16.63980 -16.20906 -16.18026 -15.57640 -14.71472 -14.49202 -14.27842 -14.19655 -13.97148 -13.73161 -13.63487 -13.56370 -13.44109 -13.40835 -12.86890 -12.63374 -12.49289 -12.19215 -12.16046 -11.94705 -11.66663 -11.62643 -11.58799 -11.29628 -11.20465 -11.05053 -10.69153 -10.63798 -10.37466 -10.02471 -9.79371 -8.78928 -8.68528 -8.19930 -6.29035 -4.33368 0.18014 0.55723 1.34349 1.72370 2.33402 2.93845 3.02285 3.18818 3.20365 3.28203 3.31778 3.80880 4.06895 4.24447 4.24696 4.36922 4.60901 4.82702 4.95215 5.06691 5.06870 5.16540 5.34398 5.37922 5.45338 5.52874 5.74714 6.09016 6.59667 6.67284 6.86201 7.01244 7.31264 8.21455 8.70094 9.29397 10.82346 Molecular weight = 360.03amu Principal moments of inertia in cm(-1) A = 0.008848 B = 0.005737 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3163.705669 B = 4879.727398 C = 6737.199372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.297 6.297 3 C 0.283 3.717 4 C -0.077 4.077 5 C -0.765 4.765 6 S 2.718 3.282 7 O -0.943 6.943 8 O -0.934 6.934 9 N -0.967 5.967 10 C 0.201 3.799 11 C -0.555 4.555 12 H 0.082 0.918 13 C 0.085 3.915 14 N -0.885 5.885 15 Si 0.862 3.138 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.257 1.257 19 C 0.089 3.911 20 C 0.430 3.570 21 F -0.176 7.176 22 F -0.185 7.185 23 F -0.178 7.178 24 S 0.482 5.518 25 N -0.521 5.521 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.173 0.827 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.268 0.732 33 H 0.118 0.882 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.126 -9.040 6.563 11.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.204 6.204 3 C 0.071 3.929 4 C -0.119 4.119 5 C -0.976 4.976 6 S 2.801 3.199 7 O -0.933 6.933 8 O -0.924 6.924 9 N -0.804 5.804 10 C 0.079 3.921 11 C -0.593 4.593 12 H 0.100 0.900 13 C -0.120 4.120 14 N -0.521 5.521 15 Si 0.688 3.312 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.181 1.181 19 C -0.040 4.040 20 C 0.373 3.627 21 F -0.158 7.158 22 F -0.167 7.167 23 F -0.159 7.159 24 S 0.637 5.363 25 N -0.364 5.364 26 H 0.118 0.882 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.190 0.810 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.136 0.864 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.115 -7.365 7.171 10.280 hybrid contribution 0.745 -0.854 -0.712 1.338 sum 0.860 -8.219 6.460 10.489 Atomic orbital electron populations 1.22958 0.76920 1.03356 1.02610 1.86240 1.22797 1.22552 1.88807 1.20199 0.89949 0.85034 0.97763 1.19856 0.92726 0.97094 1.02264 1.37127 1.33317 1.07260 1.19862 1.01633 0.71966 0.73744 0.72598 1.93603 1.67022 1.56402 1.76242 1.93609 1.85945 1.36985 1.75881 1.57308 1.72873 1.19019 1.31199 1.20034 0.99204 0.78754 0.94146 1.21305 1.04221 1.03473 1.30320 0.89974 1.24776 0.94803 0.98138 0.94325 1.69872 1.21556 1.30691 1.30007 0.87047 0.81272 0.83093 0.79808 1.19696 1.20671 1.18144 1.22318 0.85672 0.91341 1.04707 1.21443 0.93673 0.73622 0.73921 1.93237 1.92675 1.96097 1.33777 1.93159 1.87611 1.54956 1.80959 1.93188 1.91388 1.47707 1.83616 1.84165 0.84746 1.07576 1.59833 1.76165 1.29243 1.02814 1.28223 0.88171 0.92312 0.92022 0.80970 0.92306 0.93185 0.92206 0.86387 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.47 101.05 1.06 1.45 16 2 O -0.30 -4.09 10.54 -19.57 -0.21 -4.30 16 3 C 0.28 4.44 7.42 -18.17 -0.13 4.31 16 4 C -0.08 -1.16 10.02 -40.70 -0.41 -1.57 16 5 C -0.77 -12.87 6.64 29.60 0.20 -12.68 16 6 S 2.72 48.31 5.76 -107.50 -0.62 47.69 16 7 O -0.94 -16.49 15.26 -57.17 -0.87 -17.36 16 8 O -0.93 -18.70 16.52 -57.17 -0.94 -19.64 16 9 N -0.97 -17.29 2.67 -115.66 -0.31 -17.59 16 10 C 0.20 4.19 4.32 -5.19 -0.02 4.17 16 11 C -0.55 -13.31 9.94 -34.44 -0.34 -13.65 16 12 H 0.08 2.09 8.06 -52.48 -0.42 1.66 16 13 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 14 N -0.88 -24.32 13.96 55.43 0.77 -23.55 16 15 Si 0.86 19.40 27.47 -169.99 -4.67 14.73 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 19 C 0.09 1.29 5.42 -4.04 -0.02 1.27 16 20 C 0.43 6.50 3.29 37.16 0.12 6.62 16 21 F -0.18 -2.90 15.55 2.25 0.04 -2.87 16 22 F -0.19 -2.56 17.32 2.25 0.04 -2.52 16 23 F -0.18 -2.91 15.70 2.25 0.04 -2.87 16 24 S 0.48 8.45 23.66 -107.50 -2.54 5.90 16 25 N -0.52 -8.78 11.14 28.92 0.32 -8.46 16 26 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.17 2.09 8.06 -52.49 -0.42 1.67 16 30 H 0.06 1.28 5.97 -51.93 -0.31 0.97 16 31 H 0.05 1.01 6.15 -51.93 -0.32 0.69 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.12 1.36 7.61 -51.93 -0.40 0.96 16 34 H 0.14 1.82 8.11 -51.93 -0.42 1.40 16 LS Contribution 335.94 15.07 5.06 5.06 Total: -1.00 -29.57 335.94 -6.27 -35.84 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -2.73 Total: -2.05 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 0.35 Total: -8.01 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.79 Total: -49.61 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -2.02 Total: -41.30 kcal Atomic # 9 Polarization: -8.37 SS G_CDS: 0.11 Total: -8.26 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.67 Total: 14.73 kcal Atomic # 16 Polarization: 56.76 SS G_CDS: -3.16 Total: 53.60 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.57 -6.27 -35.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952882030.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.133 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds