Wall clock time and date at job start Tue Mar 31 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35945 * 117.00169 * 2 1 4 4 C 1.38273 * 121.64294 * 180.26116 * 3 2 1 5 5 C 1.35049 * 114.72524 * 180.19948 * 4 3 2 6 6 S 1.76207 * 127.19926 * 179.84183 * 5 4 3 7 7 O 1.42095 * 106.39918 * 336.16826 * 6 5 4 8 8 O 1.42098 * 106.40181 * 203.25033 * 6 5 4 9 9 N 1.65597 * 107.21624 * 89.70884 * 6 5 4 10 10 C 1.46506 * 120.00079 * 90.00391 * 9 6 5 11 11 C 1.50701 * 109.46970 * 264.72396 * 10 9 6 12 12 H 1.08005 * 119.99694 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00052 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00074 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00171 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47010 * 90.00165 * 15 13 11 17 17 H 1.48496 * 109.47338 * 210.00715 * 15 13 11 18 18 H 1.48504 * 109.46968 * 330.00328 * 15 13 11 19 19 C 1.46499 * 119.99926 * 269.72430 * 9 6 5 20 20 C 1.53001 * 109.47277 * 265.27680 * 19 9 6 21 21 F 1.39897 * 109.47087 * 59.99788 * 20 19 9 22 22 F 1.39898 * 109.47123 * 180.02562 * 20 19 9 23 23 F 1.39904 * 109.46986 * 300.00127 * 20 19 9 24 24 S 1.72030 * 105.60450 * 359.58264 * 5 4 3 25 25 N 1.30348 * 121.64151 * 359.97438 * 3 2 1 26 26 H 1.09003 * 109.47271 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47169 * 300.00206 * 1 2 3 28 28 H 1.09000 * 109.46842 * 59.99681 * 1 2 3 29 29 H 1.07997 * 122.63423 * 0.02679 * 4 3 2 30 30 H 1.08999 * 109.46864 * 24.71745 * 10 9 6 31 31 H 1.08999 * 109.46950 * 144.72128 * 10 9 6 32 32 H 0.97000 * 120.00214 * 179.97438 * 14 13 11 33 33 H 1.08991 * 109.47463 * 25.27752 * 19 9 6 34 34 H 1.09000 * 109.46878 * 145.27981 * 19 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4244 1.3232 -0.0054 5 6 3.8882 2.5915 -0.0004 6 16 5.5722 3.1101 -0.0009 7 8 6.3235 2.0339 0.5436 8 8 5.5880 4.4226 0.5432 9 7 6.0402 3.2539 -1.5829 10 6 5.8740 4.5301 -2.2828 11 6 4.5764 4.5173 -3.0492 12 1 3.9396 3.6456 -3.0183 13 6 4.2029 5.6180 -3.7907 14 7 3.0703 5.6071 -4.4591 15 14 5.3047 7.1255 -3.8447 16 1 6.2609 6.9995 -4.9739 17 1 4.4722 8.3406 -4.0341 18 1 6.0568 7.2349 -2.5689 19 6 6.6262 2.1067 -2.2805 20 6 8.1519 2.1837 -2.1968 21 9 8.5468 2.1648 -0.8548 22 9 8.7115 1.0885 -2.8635 23 9 8.5926 3.3687 -2.7959 24 16 2.4909 3.5951 -0.0008 25 7 1.3679 2.3244 -0.0005 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 4.0784 0.4638 -0.0102 30 1 5.8592 5.3433 -1.5571 31 1 6.7034 4.6756 -2.9749 32 1 2.8073 6.3816 -4.9804 33 1 6.2829 1.1835 -1.8139 34 1 6.3185 2.1215 -3.3261 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000952882030.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:40 Heat of formation + Delta-G solvation = -228.469976 kcal Electronic energy + Delta-G solvation = -29256.831122 eV Core-core repulsion = 24415.140041 eV Total energy + Delta-G solvation = -4841.691080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.026 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.99603 -48.51347 -48.48626 -41.27736 -38.57611 -37.86265 -37.80917 -37.15438 -34.61126 -32.67106 -31.27701 -29.00752 -28.59923 -25.57273 -24.65198 -23.72744 -22.30440 -20.51160 -20.03659 -19.53382 -19.48210 -19.08912 -18.78215 -18.54835 -18.03768 -17.52717 -17.29907 -16.93429 -16.20627 -15.79522 -15.71149 -15.43414 -15.27481 -14.92709 -14.80692 -14.77994 -14.66323 -14.62690 -14.43303 -14.24080 -13.89630 -13.61948 -13.44346 -13.20517 -13.13147 -13.10019 -12.96183 -12.61521 -12.46908 -12.39573 -12.28968 -12.04078 -11.92745 -11.66931 -11.31162 -10.72914 -10.23377 -9.49235 -8.24840 -6.30145 -1.13780 -0.80442 0.03131 0.44170 1.09737 1.40792 1.45614 1.53234 1.61563 1.82143 2.09412 2.38440 2.44600 2.87932 3.05462 3.08758 3.13648 3.31939 3.61917 3.74633 4.09668 4.27220 4.27553 4.31811 4.34444 4.53296 4.67976 4.90169 4.92642 5.06384 5.29937 5.46951 5.88829 6.27875 6.75836 7.34780 8.89216 Molecular weight = 360.03amu Principal moments of inertia in cm(-1) A = 0.008848 B = 0.005737 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3163.705669 B = 4879.727398 C = 6737.199372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.296 6.296 3 C 0.282 3.718 4 C -0.061 4.061 5 C -0.771 4.771 6 S 2.729 3.271 7 O -0.938 6.938 8 O -0.961 6.961 9 N -0.971 5.971 10 C 0.206 3.794 11 C -0.537 4.537 12 H 0.062 0.938 13 C 0.034 3.966 14 N -0.930 5.930 15 Si 0.907 3.093 16 H -0.263 1.263 17 H -0.286 1.286 18 H -0.246 1.246 19 C 0.079 3.921 20 C 0.432 3.568 21 F -0.185 7.185 22 F -0.176 7.176 23 F -0.187 7.187 24 S 0.431 5.569 25 N -0.526 5.526 26 H 0.138 0.862 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.207 0.793 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.267 0.733 33 H 0.152 0.848 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.995 -10.753 6.874 12.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.202 6.202 3 C 0.068 3.932 4 C -0.103 4.103 5 C -0.982 4.982 6 S 2.813 3.187 7 O -0.928 6.928 8 O -0.951 6.951 9 N -0.808 5.808 10 C 0.083 3.917 11 C -0.576 4.576 12 H 0.081 0.919 13 C -0.166 4.166 14 N -0.569 5.569 15 Si 0.731 3.269 16 H -0.187 1.187 17 H -0.212 1.212 18 H -0.169 1.169 19 C -0.049 4.049 20 C 0.376 3.624 21 F -0.166 7.166 22 F -0.157 7.157 23 F -0.168 7.168 24 S 0.586 5.414 25 N -0.370 5.370 26 H 0.156 0.844 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.224 0.776 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.170 0.830 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.019 -9.101 7.494 11.833 hybrid contribution 0.407 -0.538 -0.768 1.022 sum 1.425 -9.639 6.726 11.839 Atomic orbital electron populations 1.23269 0.75159 1.05798 1.02295 1.86270 1.24501 1.21152 1.88322 1.20496 0.90441 0.85484 0.96745 1.20276 0.92988 0.97466 0.99603 1.36956 1.32288 1.07732 1.21233 1.01162 0.71954 0.73236 0.72332 1.93603 1.67123 1.55952 1.76110 1.93575 1.86455 1.38540 1.76540 1.57191 1.73280 1.19116 1.31199 1.19793 0.97838 0.80171 0.93932 1.21481 1.04778 1.02242 1.29079 0.91947 1.25446 0.95813 1.00807 0.94537 1.69989 1.23540 1.31534 1.31870 0.86306 0.79983 0.80078 0.80506 1.18730 1.21167 1.16908 1.22698 0.85131 0.91395 1.05672 1.21471 0.93892 0.73541 0.73540 1.93223 1.92794 1.96132 1.34477 1.93179 1.87495 1.54360 1.80694 1.93170 1.91534 1.48390 1.83730 1.84295 0.86074 1.09014 1.62018 1.76218 1.28962 1.02944 1.28841 0.84401 0.92099 0.92869 0.77597 0.93007 0.92027 0.92426 0.83032 0.83340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.47 113.37 1.19 1.74 16 2 O -0.30 -7.41 10.54 -92.93 -0.98 -8.39 16 3 C 0.28 8.36 7.42 84.92 0.63 8.99 16 4 C -0.06 -1.70 10.02 21.54 0.22 -1.49 16 5 C -0.77 -25.04 6.64 67.09 0.45 -24.59 16 6 S 2.73 93.11 5.76 -56.49 -0.33 92.78 16 7 O -0.94 -30.54 15.26 -128.00 -1.95 -32.49 16 8 O -0.96 -38.06 16.52 -128.00 -2.11 -40.18 16 9 N -0.97 -33.05 2.67 -519.85 -1.39 -34.44 16 10 C 0.21 8.36 4.32 85.63 0.37 8.73 16 11 C -0.54 -25.62 9.94 25.60 0.25 -25.36 16 12 H 0.06 3.19 8.06 -2.91 -0.02 3.16 16 13 C 0.03 1.77 5.47 84.65 0.46 2.23 16 14 N -0.93 -52.00 13.96 21.44 0.30 -51.71 16 15 Si 0.91 39.48 27.47 68.60 1.88 41.37 16 16 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 17 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.25 -10.13 6.54 99.48 0.65 -9.48 16 19 C 0.08 2.09 5.42 86.38 0.47 2.56 16 20 C 0.43 12.01 3.29 71.98 0.24 12.25 16 21 F -0.18 -5.67 15.55 44.97 0.70 -4.97 16 22 F -0.18 -4.39 17.32 44.97 0.78 -3.62 16 23 F -0.19 -5.75 15.70 44.97 0.71 -5.05 16 24 S 0.43 15.27 23.66 -56.49 -1.34 13.93 16 25 N -0.53 -17.49 11.14 -176.06 -1.96 -19.45 16 26 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.21 4.20 8.06 -2.91 -0.02 4.17 16 30 H 0.05 2.21 5.97 -2.39 -0.01 2.19 16 31 H 0.06 2.38 6.15 -2.39 -0.01 2.37 16 32 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 33 H 0.15 2.93 7.61 -2.39 -0.02 2.92 16 34 H 0.15 3.59 8.11 -2.39 -0.02 3.57 16 Total: -1.00 -62.92 335.94 -0.30 -63.22 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 1.12 Total: 3.92 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 4.27 Total: -14.94 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -3.05 Total: -105.59 kcal Atomic # 8 Polarization: -76.01 SS G_CDS: -5.05 Total: -81.06 kcal Atomic # 9 Polarization: -15.81 SS G_CDS: 2.18 Total: -13.63 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.88 Total: 41.37 kcal Atomic # 16 Polarization: 108.38 SS G_CDS: -1.66 Total: 106.72 kcal Total: -62.92 -0.30 -63.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952882030.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.250 kcal (2) G-P(sol) polarization free energy of solvation -62.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds