Wall clock time and date at job start Tue Mar 31 2020 05:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34123 * 125.99217 * 2 1 4 4 C 1.30493 * 109.25836 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.65271 * 179.97438 * 4 3 2 6 6 H 1.09001 * 110.72887 * 211.92994 * 5 4 3 7 7 C 1.54935 * 110.66728 * 88.82787 * 5 4 3 8 8 C 1.54591 * 102.92533 * 204.15237 * 7 5 4 9 9 C 1.53996 * 105.13554 * 21.95889 * 8 7 5 10 10 N 1.47901 * 107.06060 * 1.22501 * 9 8 7 11 11 C 1.46891 * 111.00046 * 214.15212 * 10 9 8 12 12 C 1.50700 * 109.47539 * 294.29787 * 11 10 9 13 13 O 1.21286 * 119.99690 * 353.81346 * 12 11 10 14 14 N 1.34780 * 120.00304 * 173.81161 * 12 11 10 15 15 C 1.46504 * 119.99985 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.46967 * 269.72484 * 15 14 12 17 17 H 1.07998 * 119.99858 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99789 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00179 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99987 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46963 * 59.99850 * 20 18 16 22 22 H 1.48497 * 109.47272 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47333 * 299.99979 * 20 18 16 24 24 C 1.46504 * 119.99802 * 359.72206 * 14 12 11 25 25 C 1.53000 * 109.47007 * 270.27701 * 24 14 12 26 26 C 1.47192 * 109.46966 * 180.02562 * 25 24 14 27 27 N 8.74538 * 129.05025 * 284.72421 * 2 1 3 28 28 N 1.35042 * 108.69820 * 0.26336 * 4 3 2 29 29 H 0.97002 * 126.39580 * 179.74468 * 28 4 3 30 30 C 1.34661 * 125.98577 * 180.02562 * 2 1 3 31 31 C 1.50707 * 126.59561 * 0.02562 * 30 2 1 32 32 H 1.09006 * 109.47071 * 89.97743 * 1 2 3 33 33 H 1.08998 * 109.47161 * 209.97917 * 1 2 3 34 34 H 1.09001 * 109.47276 * 329.97831 * 1 2 3 35 35 H 1.09007 * 110.71905 * 85.79415 * 7 5 4 36 36 H 1.08998 * 110.72744 * 322.51486 * 7 5 4 37 37 H 1.09001 * 110.30919 * 263.04912 * 8 7 5 38 38 H 1.09000 * 110.30731 * 140.87577 * 8 7 5 39 39 H 1.09001 * 109.91461 * 241.86933 * 9 8 7 40 40 H 1.09009 * 109.91352 * 120.58031 * 9 8 7 41 41 H 1.08998 * 109.47396 * 174.29534 * 11 10 9 42 42 H 1.09002 * 109.47301 * 54.29708 * 11 10 9 43 43 H 1.09006 * 109.46801 * 29.72516 * 15 14 12 44 44 H 1.08997 * 109.46753 * 149.71822 * 15 14 12 45 45 H 0.97003 * 120.00117 * 179.97438 * 19 18 16 46 46 H 1.08998 * 109.47117 * 30.27547 * 24 14 12 47 47 H 1.08994 * 109.46573 * 150.27496 * 24 14 12 48 48 H 1.09006 * 109.47215 * 300.00100 * 25 24 14 49 49 H 1.09002 * 109.47064 * 60.00126 * 25 24 14 50 50 H 1.08993 * 109.46800 * 89.99816 * 31 30 2 51 51 H 1.08998 * 109.46826 * 210.00119 * 31 30 2 52 52 H 1.09000 * 109.46943 * 330.00063 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2953 1.0852 0.0000 4 6 3.5449 0.7095 -0.0006 5 6 4.7387 1.6292 -0.0013 6 1 5.5721 1.1793 -0.5408 7 6 5.1545 1.9867 1.4478 8 6 5.8959 3.3319 1.2729 9 6 5.3818 3.9039 -0.0613 10 7 4.3847 2.9470 -0.5881 11 6 4.4263 2.8981 -2.0557 12 6 3.9890 4.2272 -2.6153 13 8 3.5672 5.0885 -1.8728 14 7 4.0665 4.4588 -3.9408 15 6 3.6419 5.7511 -4.4847 16 6 2.1793 5.6894 -4.8425 17 1 1.6220 4.7784 -4.6812 18 6 1.5530 6.7954 -5.3766 19 7 2.2318 7.9045 -5.5733 20 14 -0.2598 6.7187 -5.8207 21 1 -1.0546 6.4083 -4.6052 22 1 -0.6903 8.0286 -6.3719 23 1 -0.4759 5.6582 -6.8375 24 6 4.5818 3.4205 -4.8368 25 6 6.0980 3.5723 -4.9747 26 6 6.6155 2.5295 -5.8754 27 7 7.0166 1.7262 -6.5686 28 7 3.5912 -0.6401 -0.0068 29 1 4.3913 -1.1886 -0.0121 30 6 2.2983 -1.0896 -0.0005 31 6 1.8472 -2.5276 -0.0017 32 1 -0.3633 0.0004 -1.0277 33 1 -0.3633 -0.8901 0.5135 34 1 -0.3634 0.8898 0.5142 35 1 5.8227 1.2281 1.8555 36 1 4.2765 2.1098 2.0818 37 1 6.9723 3.1671 1.2241 38 1 5.6525 4.0074 2.0930 39 1 6.2081 4.0045 -0.7651 40 1 4.9133 4.8738 0.1065 41 1 3.7565 2.1156 -2.4123 42 1 5.4434 2.6828 -2.3834 43 1 3.8008 6.5294 -3.7382 44 1 4.2250 5.9790 -5.3769 45 1 1.7913 8.6825 -5.9495 46 1 4.3509 2.4380 -4.4252 47 1 4.1157 3.5225 -5.8168 48 1 6.3289 4.5549 -5.3863 49 1 6.5639 3.4703 -3.9946 50 1 1.7388 -2.8734 -1.0296 51 1 2.5874 -3.1410 0.5120 52 1 0.8890 -2.6082 0.5117 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952991754.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:51 Heat of formation + Delta-G solvation = 57.105364 kcal Electronic energy + Delta-G solvation = -32880.995690 eV Core-core repulsion = 28688.691795 eV Total energy + Delta-G solvation = -4192.303895 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.21269 -39.68759 -38.23367 -36.84808 -35.14475 -33.26068 -32.93460 -32.79857 -32.14482 -30.80519 -29.48585 -28.55693 -27.94306 -25.95132 -24.89444 -23.96593 -22.70847 -22.06382 -21.00622 -20.43456 -19.52314 -18.43230 -17.57275 -17.53782 -16.54068 -16.36502 -16.07481 -15.61146 -15.46836 -15.21146 -14.69062 -14.58464 -14.11288 -13.96600 -13.85908 -13.76035 -13.33176 -13.20606 -12.93607 -12.91898 -12.81786 -12.59416 -12.54149 -12.44275 -12.31173 -12.15532 -12.08231 -12.02384 -11.73860 -11.64653 -11.28672 -11.23182 -11.19557 -10.96293 -10.80617 -10.66076 -10.54390 -10.12022 -9.78086 -9.72285 -9.64283 -8.92073 -8.40170 -8.24876 -8.10995 -7.75214 -6.02166 -4.06043 1.90423 2.71368 2.78875 2.84466 3.11793 3.36139 3.39683 3.40542 3.47038 3.57828 3.96750 4.17506 4.31851 4.48628 4.54381 4.69502 4.78218 4.81417 4.88325 4.96601 5.04735 5.10784 5.15559 5.20809 5.23767 5.28044 5.29425 5.33460 5.39332 5.47506 5.53238 5.57720 5.65582 5.70537 5.77436 5.83683 5.86618 5.89231 6.02961 6.08786 6.10972 6.16464 6.29787 6.76272 6.84824 6.92792 7.10031 7.31599 7.42403 7.51310 7.54817 7.94762 8.23195 8.24971 8.34606 8.93368 9.10799 9.59475 11.05940 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.007238 B = 0.003265 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3867.522691 B = 8572.692563 C = 9645.260006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.002 3.998 3 N -0.441 5.441 4 C 0.219 3.781 5 C 0.149 3.851 6 H 0.064 0.936 7 C -0.110 4.110 8 C -0.129 4.129 9 C 0.041 3.959 10 N -0.467 5.467 11 C 0.030 3.970 12 C 0.512 3.488 13 O -0.508 6.508 14 N -0.601 5.601 15 C 0.248 3.752 16 C -0.526 4.526 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.896 5.896 20 Si 0.895 3.105 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.278 1.278 24 C 0.119 3.881 25 C -0.051 4.051 26 C 0.218 3.782 27 N -0.446 5.446 28 N -0.568 5.568 29 H 0.413 0.587 30 C -0.036 4.036 31 C -0.073 4.073 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.042 0.958 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.052 0.948 43 H 0.046 0.954 44 H 0.033 0.967 45 H 0.263 0.737 46 H 0.071 0.929 47 H 0.094 0.906 48 H 0.118 0.882 49 H 0.103 0.897 50 H 0.070 0.930 51 H 0.060 0.940 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.138 -18.768 12.844 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.128 4.128 3 N -0.160 5.160 4 C -0.045 4.045 5 C 0.038 3.962 6 H 0.082 0.918 7 C -0.149 4.149 8 C -0.167 4.167 9 C -0.086 4.086 10 N -0.191 5.191 11 C -0.101 4.101 12 C 0.297 3.703 13 O -0.382 6.382 14 N -0.334 5.334 15 C 0.129 3.871 16 C -0.565 4.565 17 H 0.076 0.924 18 C -0.139 4.139 19 N -0.535 5.535 20 Si 0.723 3.277 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.008 4.008 25 C -0.093 4.093 26 C -0.100 4.100 27 N -0.124 5.124 28 N -0.173 5.173 29 H 0.250 0.750 30 C -0.150 4.150 31 C -0.131 4.131 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.060 0.940 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.112 0.888 48 H 0.136 0.864 49 H 0.121 0.879 50 H 0.089 0.911 51 H 0.079 0.921 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.595 -18.261 12.271 23.275 hybrid contribution 0.373 -1.108 -0.545 1.289 sum 7.968 -19.368 11.726 24.003 Atomic orbital electron populations 1.20032 0.87881 1.02355 1.02247 1.20667 0.96599 0.88046 1.07472 1.70324 0.99273 1.29234 1.17124 1.22686 0.95027 0.80570 1.06229 1.20894 0.89300 0.89148 0.96875 0.91782 1.22486 1.00719 0.97070 0.94604 1.22428 0.99286 0.96567 0.98464 1.22935 0.92945 0.98177 0.94559 1.64218 1.47309 1.02726 1.04858 1.22299 1.00358 0.98414 0.89079 1.20022 0.79425 0.88431 0.82424 1.90693 1.43933 1.46035 1.57495 1.48209 1.62767 1.17135 1.05315 1.19303 0.94890 0.78538 0.94347 1.21401 0.95079 0.98492 1.41546 0.92413 1.24894 0.98253 0.95140 0.95608 1.69909 1.36475 1.02376 1.44722 0.86595 0.85252 0.77056 0.78774 1.20054 1.21258 1.20319 1.21258 0.89810 0.92146 0.97552 1.19932 0.98070 0.94669 0.96598 1.29059 0.93219 0.93981 0.93774 1.81131 1.09433 1.11336 1.10458 1.43047 1.07976 1.07856 1.58418 0.75029 1.20935 0.83700 0.97192 1.13192 1.20179 1.01715 0.88649 1.02553 0.91410 0.91762 0.91016 0.91090 0.89857 0.91500 0.90467 0.93971 0.88242 0.88515 0.92986 0.93585 0.94909 0.92704 0.91069 0.88751 0.86380 0.87879 0.91097 0.92059 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.22 36.01 0.37 -0.39 16 2 C 0.00 0.03 7.09 -82.86 -0.59 -0.56 16 3 N -0.44 -7.10 11.06 -7.07 -0.08 -7.18 16 4 C 0.22 2.79 6.86 -155.42 -1.07 1.72 16 5 C 0.15 1.66 2.85 -66.94 -0.19 1.47 16 6 H 0.06 0.57 8.02 -51.93 -0.42 0.15 16 7 C -0.11 -1.05 6.49 -24.87 -0.16 -1.21 16 8 C -0.13 -1.23 6.93 -25.38 -0.18 -1.40 16 9 C 0.04 0.53 5.65 -2.75 -0.02 0.52 16 10 N -0.47 -6.79 4.54 -225.42 -1.02 -7.81 16 11 C 0.03 0.44 3.63 -4.98 -0.02 0.42 16 12 C 0.51 9.89 7.36 -10.98 -0.08 9.81 16 13 O -0.51 -12.19 14.61 5.55 0.08 -12.11 16 14 N -0.60 -11.37 2.46 -175.05 -0.43 -11.80 16 15 C 0.25 5.99 5.17 -5.19 -0.03 5.97 16 16 C -0.53 -14.48 9.39 -34.44 -0.32 -14.80 16 17 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 20 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.12 1.66 5.08 -4.04 -0.02 1.64 16 25 C -0.05 -0.54 5.97 -29.52 -0.18 -0.72 16 26 C 0.22 2.65 15.43 -20.82 -0.32 2.33 16 27 N -0.45 -6.56 18.53 42.09 0.78 -5.78 16 28 N -0.57 -5.53 6.15 -6.54 -0.04 -5.57 16 29 H 0.41 2.55 8.96 -40.82 -0.37 2.18 16 30 C -0.04 -0.38 7.24 -81.60 -0.59 -0.97 16 31 C -0.07 -0.49 10.22 36.01 0.37 -0.12 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.54 7.17 -51.93 -0.37 0.16 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.49 7.64 -51.93 -0.40 0.10 16 40 H 0.10 1.58 7.33 -51.92 -0.38 1.20 16 41 H 0.10 1.47 7.48 -51.93 -0.39 1.08 16 42 H 0.05 0.58 6.63 -51.93 -0.34 0.24 16 43 H 0.05 1.27 7.41 -51.93 -0.38 0.88 16 44 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.07 0.87 6.62 -51.93 -0.34 0.52 16 47 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 48 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 49 H 0.10 0.89 7.11 -51.93 -0.37 0.52 16 50 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 52 H 0.08 0.47 7.18 -51.93 -0.37 0.10 16 LS Contribution 429.52 15.07 6.47 6.47 Total: -1.00 -36.86 429.52 -9.96 -46.82 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -8.32 Total: 0.02 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -3.12 Total: 5.37 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: -0.06 Total: -63.42 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.08 Total: -12.11 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.47 Total: 6.47 kcal Total: -36.86 -9.96 -46.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952991754.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.925 kcal (2) G-P(sol) polarization free energy of solvation -36.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds