Wall clock time and date at job start Tue Mar 31 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34131 * 125.98874 * 2 1 4 4 C 1.30497 * 109.25467 * 180.18248 * 3 2 1 5 5 C 1.50701 * 125.65053 * 179.88879 * 4 3 2 6 6 H 1.08996 * 109.88277 * 187.32540 * 5 4 3 7 7 C 1.54319 * 109.89148 * 308.53155 * 5 4 3 8 8 C 1.55140 * 103.02031 * 141.68491 * 7 5 4 9 9 C 1.54901 * 101.65297 * 324.34797 * 8 7 5 10 10 N 1.47446 * 109.88503 * 66.29694 * 5 4 3 11 11 C 1.46898 * 111.00353 * 3.85404 * 10 5 4 12 12 C 1.50690 * 109.47667 * 164.98781 * 11 10 5 13 13 O 1.21286 * 120.00093 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00673 * 180.02562 * 12 11 10 15 15 C 1.46493 * 120.00665 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47304 * 270.00252 * 15 14 12 17 17 H 1.08000 * 119.99570 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00348 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99703 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99834 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46594 * 90.00001 * 20 18 16 22 22 H 1.48498 * 109.46673 * 209.99592 * 20 18 16 23 23 H 1.48495 * 109.47120 * 329.99795 * 20 18 16 24 24 C 1.46504 * 119.99347 * 359.97438 * 14 12 11 25 25 C 1.52999 * 109.47302 * 270.00186 * 24 14 12 26 26 C 1.47197 * 109.47368 * 180.02562 * 25 24 14 27 27 N 4.61512 * 52.37043 * 75.85939 * 2 1 3 28 28 N 1.35044 * 108.70012 * 359.63124 * 4 3 2 29 29 H 0.97006 * 126.39457 * 180.24980 * 28 4 3 30 30 C 1.34666 * 125.99134 * 179.77504 * 2 1 3 31 31 C 1.50703 * 126.59110 * 0.02562 * 30 2 1 32 32 H 1.09006 * 109.47602 * 270.21559 * 1 2 3 33 33 H 1.09002 * 109.47314 * 30.22129 * 1 2 3 34 34 H 1.09000 * 109.46956 * 150.22095 * 1 2 3 35 35 H 1.09000 * 110.70231 * 260.07486 * 7 5 4 36 36 H 1.09002 * 110.70280 * 23.30130 * 7 5 4 37 37 H 1.09000 * 110.98686 * 82.44296 * 8 7 5 38 38 H 1.09002 * 110.98654 * 206.25508 * 8 7 5 39 39 H 1.09006 * 110.37314 * 278.23714 * 9 8 7 40 40 H 1.09003 * 110.37609 * 155.90431 * 9 8 7 41 41 H 1.09007 * 109.46886 * 44.98477 * 11 10 5 42 42 H 1.09004 * 109.47037 * 284.98977 * 11 10 5 43 43 H 1.09010 * 109.47149 * 29.99456 * 15 14 12 44 44 H 1.08993 * 109.47484 * 149.99569 * 15 14 12 45 45 H 0.96995 * 119.99575 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.46850 * 150.00377 * 24 14 12 47 47 H 1.09001 * 109.47093 * 30.00443 * 24 14 12 48 48 H 1.09001 * 109.47256 * 300.00157 * 25 24 14 49 49 H 1.09002 * 109.47275 * 59.99808 * 25 24 14 50 50 H 1.08998 * 109.47156 * 269.97753 * 31 30 2 51 51 H 1.09001 * 109.46898 * 29.97865 * 31 30 2 52 52 H 1.09003 * 109.47157 * 149.97394 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5449 0.7096 -0.0039 5 6 4.7386 1.6294 -0.0077 6 1 5.6523 1.0504 -0.1412 7 6 4.5992 2.6659 -1.1424 8 6 5.1598 3.9629 -0.5018 9 6 4.6805 3.8202 0.9643 10 7 4.7996 2.3770 1.2617 11 6 3.7410 1.9399 2.1816 12 6 4.0455 2.4377 3.5710 13 8 5.0458 3.0926 3.7748 14 7 3.2064 2.1552 4.5871 15 6 3.5022 2.6396 5.9377 16 6 4.3297 1.6143 6.6691 17 1 4.6071 0.6937 6.1772 18 6 4.7326 1.8514 7.9662 19 7 4.3952 2.9726 8.5650 20 14 5.7577 0.5800 8.8730 21 1 7.1994 0.8485 8.6391 22 1 5.4693 0.6578 10.3276 23 1 5.4193 -0.7767 8.3731 24 6 1.9979 1.3647 4.3408 25 6 0.8408 2.2997 3.9834 26 6 -0.3737 1.5055 3.7365 27 7 -1.3108 0.8929 3.5443 28 7 3.5912 -0.6401 0.0017 29 1 4.3914 -1.1885 0.0039 30 6 2.2984 -1.0896 0.0043 31 6 1.8472 -2.5275 0.0094 32 1 -0.3634 0.0039 1.0277 33 1 -0.3634 0.8880 -0.5173 34 1 -0.3633 -0.8920 -0.5104 35 1 5.1958 2.3738 -2.0066 36 1 3.5531 2.7944 -1.4205 37 1 6.2482 3.9864 -0.5563 38 1 4.7278 4.8476 -0.9695 39 1 3.6434 4.1426 1.0576 40 1 5.3200 4.3992 1.6307 41 1 3.6922 0.8510 2.1883 42 1 2.7838 2.3444 1.8524 43 1 4.0568 3.5760 5.8745 44 1 2.5695 2.8054 6.4766 45 1 4.6789 3.1396 9.4773 46 1 1.7444 0.7994 5.2376 47 1 2.1764 0.6756 3.5153 48 1 0.6622 2.9888 4.8088 49 1 1.0942 2.8651 3.0866 50 1 1.7385 -2.8705 1.0382 51 1 0.8893 -2.6096 -0.5042 52 1 2.5876 -3.1424 -0.5023 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952991756.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:56 Heat of formation + Delta-G solvation = 60.770228 kcal Electronic energy + Delta-G solvation = -33959.119667 eV Core-core repulsion = 29766.974692 eV Total energy + Delta-G solvation = -4192.144975 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.52313 -39.59635 -38.25863 -36.71094 -35.08648 -33.34855 -32.97345 -32.86045 -32.02640 -30.73727 -29.49734 -28.66876 -27.92081 -25.87290 -24.98015 -23.91525 -22.69639 -22.06011 -21.26548 -20.34638 -19.60320 -18.52822 -17.57600 -17.28861 -16.77551 -16.40505 -15.91607 -15.55163 -15.38645 -15.00184 -14.84658 -14.59111 -14.18229 -14.05318 -13.74617 -13.66262 -13.43182 -13.11557 -12.97674 -12.91727 -12.81014 -12.64640 -12.47192 -12.42581 -12.30962 -12.20495 -12.07323 -11.85416 -11.67822 -11.59456 -11.25454 -11.22418 -11.08092 -10.93309 -10.78724 -10.69144 -10.57256 -10.15164 -10.05423 -9.91153 -9.65398 -8.97199 -8.43368 -8.34302 -8.07314 -7.73656 -6.04818 -4.08857 1.80489 2.81280 2.86399 2.87284 2.91038 3.31404 3.37065 3.37994 3.46406 3.62252 4.01931 4.10654 4.36766 4.45859 4.61881 4.66804 4.68561 4.81735 4.91868 5.07377 5.12933 5.16947 5.19261 5.23904 5.26823 5.28588 5.31844 5.43660 5.49206 5.57092 5.59601 5.66235 5.69034 5.73157 5.78505 5.85260 5.86751 5.90806 5.99793 6.07841 6.14015 6.19364 6.26638 6.64639 6.84614 6.97065 7.09878 7.19871 7.42788 7.51949 7.66418 7.91915 7.94481 8.22910 8.36602 8.90891 9.11617 9.56423 11.03300 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.008605 B = 0.003686 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3253.125033 B = 7595.230586 C = 8812.586008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.006 3.994 3 N -0.477 5.477 4 C 0.200 3.800 5 C 0.156 3.844 6 H 0.097 0.903 7 C -0.128 4.128 8 C -0.127 4.127 9 C 0.047 3.953 10 N -0.491 5.491 11 C 0.035 3.965 12 C 0.507 3.493 13 O -0.516 6.516 14 N -0.600 5.600 15 C 0.247 3.753 16 C -0.525 4.525 17 H 0.056 0.944 18 C 0.063 3.937 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.123 3.877 25 C -0.051 4.051 26 C 0.219 3.781 27 N -0.445 5.445 28 N -0.560 5.560 29 H 0.418 0.582 30 C -0.027 4.027 31 C -0.077 4.077 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.046 0.954 44 H 0.033 0.967 45 H 0.263 0.737 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.116 0.884 49 H 0.105 0.895 50 H 0.074 0.926 51 H 0.081 0.919 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.212 -5.374 -21.242 22.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.123 4.123 3 N -0.197 5.197 4 C -0.064 4.064 5 C 0.046 3.954 6 H 0.115 0.885 7 C -0.167 4.167 8 C -0.165 4.165 9 C -0.080 4.080 10 N -0.215 5.215 11 C -0.096 4.096 12 C 0.293 3.707 13 O -0.390 6.390 14 N -0.333 5.333 15 C 0.128 3.872 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.139 4.139 19 N -0.533 5.533 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.004 4.004 25 C -0.092 4.092 26 C -0.098 4.098 27 N -0.122 5.122 28 N -0.164 5.164 29 H 0.256 0.744 30 C -0.143 4.143 31 C -0.135 4.135 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.073 0.927 46 H 0.110 0.890 47 H 0.087 0.913 48 H 0.134 0.866 49 H 0.123 0.877 50 H 0.092 0.908 51 H 0.099 0.901 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.885 -5.094 -20.954 22.110 hybrid contribution 0.810 -1.618 0.406 1.855 sum -4.075 -6.712 -20.547 21.997 Atomic orbital electron populations 1.20026 0.87771 1.02272 1.02381 1.20485 0.96253 0.87896 1.07660 1.70132 0.99381 1.30275 1.19957 1.23535 0.95593 0.81699 1.05571 1.21063 0.91024 0.92275 0.91070 0.88494 1.22807 1.02742 0.94418 0.96727 1.22712 1.01350 0.97160 0.95324 1.23142 1.00619 0.88330 0.95915 1.63691 1.45016 1.04310 1.08497 1.22437 0.94419 1.00805 0.91963 1.20286 0.83669 0.81046 0.85710 1.90668 1.25710 1.38683 1.83989 1.48190 1.21146 1.53102 1.10834 1.19305 0.96648 0.96079 0.75181 1.21415 1.33300 1.03927 0.97775 0.92551 1.24903 0.96053 0.95593 0.97387 1.69919 1.45978 1.24050 1.13357 0.86538 0.80799 0.81603 0.78711 1.20555 1.21193 1.20031 1.21217 0.84107 0.92556 1.02539 1.19886 0.86825 0.97476 1.05039 1.29051 0.94324 0.93765 0.92703 1.81158 1.11700 1.09738 1.09615 1.43130 1.08225 1.07967 1.57070 0.74430 1.20995 0.83641 0.97364 1.12272 1.20220 1.01721 0.88605 1.02911 0.91376 0.91392 0.91621 0.90814 0.89842 0.90529 0.90586 0.93367 0.88718 0.89606 0.90322 0.93602 0.94871 0.92735 0.89027 0.91322 0.86603 0.87665 0.90769 0.90051 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.22 36.00 0.37 -0.32 16 2 C 0.01 0.07 7.09 -82.85 -0.59 -0.51 16 3 N -0.48 -6.08 9.12 -7.07 -0.06 -6.14 16 4 C 0.20 2.30 4.40 -155.42 -0.68 1.62 16 5 C 0.16 1.75 3.96 -67.87 -0.27 1.48 16 6 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 7 C -0.13 -1.23 6.46 -24.91 -0.16 -1.39 16 8 C -0.13 -1.26 7.08 -24.60 -0.17 -1.43 16 9 C 0.05 0.63 5.94 -2.30 -0.01 0.62 16 10 N -0.49 -7.06 4.77 -226.16 -1.08 -8.13 16 11 C 0.04 0.54 2.66 -4.98 -0.01 0.53 16 12 C 0.51 10.03 7.51 -10.99 -0.08 9.95 16 13 O -0.52 -12.37 15.01 5.55 0.08 -12.28 16 14 N -0.60 -11.70 2.46 -175.06 -0.43 -12.13 16 15 C 0.25 6.03 5.16 -5.20 -0.03 6.00 16 16 C -0.53 -14.36 9.39 -34.44 -0.32 -14.69 16 17 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 20 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.12 1.85 5.17 -4.04 -0.02 1.83 16 25 C -0.05 -0.62 6.03 -29.52 -0.18 -0.80 16 26 C 0.22 2.90 15.43 -20.76 -0.32 2.58 16 27 N -0.44 -6.67 18.54 42.15 0.78 -5.89 16 28 N -0.56 -5.43 6.15 -6.54 -0.04 -5.47 16 29 H 0.42 2.98 8.96 -40.82 -0.37 2.61 16 30 C -0.03 -0.28 7.24 -81.60 -0.59 -0.87 16 31 C -0.08 -0.55 10.22 36.01 0.37 -0.18 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.54 7.17 -51.93 -0.37 0.17 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.90 7.49 -51.93 -0.39 0.51 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.65 7.54 -51.93 -0.39 0.25 16 40 H 0.09 1.46 7.64 -51.93 -0.40 1.06 16 41 H 0.09 1.33 5.90 -51.93 -0.31 1.03 16 42 H 0.08 1.16 5.54 -51.93 -0.29 0.88 16 43 H 0.05 1.27 7.42 -51.92 -0.39 0.89 16 44 H 0.03 0.80 8.07 -51.93 -0.42 0.39 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 47 H 0.07 0.97 6.44 -51.93 -0.33 0.63 16 48 H 0.12 1.37 8.14 -51.93 -0.42 0.94 16 49 H 0.11 1.19 7.22 -51.93 -0.38 0.81 16 50 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.08 0.50 7.17 -51.93 -0.37 0.13 16 52 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 423.64 15.07 6.38 6.38 Total: -1.00 -34.15 423.64 -9.62 -43.77 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -8.16 Total: 2.43 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -2.81 Total: 6.06 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -0.10 Total: -62.90 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.08 Total: -12.28 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -34.15 -9.62 -43.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952991756.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.538 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds