Wall clock time and date at job start Tue Mar 31 2020 06:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86797 * 119.99662 * 2 1 4 4 H 1.48502 * 109.47171 * 240.00405 * 3 2 1 5 5 H 1.48497 * 109.47343 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46990 * 120.00400 * 3 2 1 7 7 C 1.40049 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.46377 * 120.00215 * 359.97438 * 7 2 1 10 10 O 1.21685 * 119.99691 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99785 * 180.02562 * 9 7 2 12 12 N 1.40108 * 119.99733 * 180.02562 * 11 9 7 13 13 C 1.36705 * 118.60137 * 255.01893 * 12 11 9 14 14 C 1.38557 * 120.94619 * 179.97438 * 13 12 11 15 15 C 1.46829 * 119.48089 * 359.97438 * 14 13 12 16 16 C 1.39450 * 121.91361 * 180.02562 * 15 14 13 17 17 C 1.37727 * 119.54717 * 179.97438 * 16 15 14 18 18 C 1.38917 * 120.71398 * 359.95453 * 17 16 15 19 19 C 1.37722 * 120.73103 * 0.04182 * 18 17 16 20 20 C 1.39483 * 119.56307 * 359.97438 * 19 18 17 21 21 C 1.34407 * 118.59868 * 74.99479 * 12 11 9 22 22 O 1.21728 * 119.98836 * 0.02562 * 21 12 11 23 23 C 1.47400 * 108.50913 * 180.02562 * 14 13 12 24 24 O 1.21473 * 126.54581 * 179.97438 * 23 14 13 25 25 C 1.48726 * 106.90916 * 0.02562 * 23 14 13 26 26 C 1.38356 * 132.69113 * 179.97438 * 25 23 14 27 27 C 1.39075 * 119.85009 * 179.97438 * 26 25 23 28 28 C 1.37849 * 120.24908 * 0.02562 * 27 26 25 29 29 C 1.38967 * 120.38425 * 359.97078 * 28 27 26 30 30 C 1.38730 * 119.91403 * 0.04802 * 29 28 27 31 31 H 0.97000 * 120.00196 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00388 * 359.97438 * 11 9 7 33 33 H 1.07999 * 120.22403 * 359.97316 * 16 15 14 34 34 H 1.08000 * 119.64366 * 179.97438 * 17 16 15 35 35 H 1.08003 * 119.63482 * 180.02562 * 18 17 16 36 36 H 1.08000 * 120.21843 * 179.97438 * 19 18 17 37 37 H 1.07998 * 120.07534 * 0.02562 * 26 25 23 38 38 H 1.08003 * 119.87726 * 179.72545 * 27 26 25 39 39 H 1.07996 * 119.80213 * 179.97438 * 28 27 26 40 40 H 1.08004 * 120.04014 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0943 1.6965 -1.2126 5 1 1.2756 2.7464 0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9492 -3.6476 -0.0005 12 7 1.2487 -4.8610 -0.0011 13 6 1.1897 -5.5832 1.1582 14 6 0.5098 -6.7892 1.2125 15 6 -0.1571 -7.2977 0.0073 16 6 -0.8557 -8.5046 0.0050 17 6 -1.4637 -8.9352 -1.1534 18 6 -1.3888 -8.1801 -2.3170 19 6 -0.7043 -6.9852 -2.3377 20 6 -0.0804 -6.5293 -1.1765 21 6 0.6629 -5.2652 -1.1413 22 8 0.7479 -4.5813 -2.1446 23 6 0.6207 -7.3277 2.5802 24 8 0.1451 -8.3681 2.9887 25 6 1.4249 -6.3532 3.3648 26 6 1.8445 -6.3292 4.6830 27 6 2.6048 -5.2615 5.1480 28 6 2.9411 -4.2274 4.3008 29 6 2.5250 -4.2413 2.9750 30 6 1.7659 -5.3005 2.4992 31 1 -0.4850 0.8400 0.0004 32 1 2.9192 -3.6476 -0.0009 33 1 -0.9195 -9.0976 0.9054 34 1 -2.0048 -9.8699 -1.1570 35 1 -1.8724 -8.5342 -3.2154 36 1 -0.6511 -6.4050 -3.2471 37 1 1.5830 -7.1380 5.3491 38 1 2.9288 -5.2401 6.1781 39 1 3.5314 -3.4017 4.6697 40 1 2.7913 -3.4280 2.3161 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001547139526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:16 Heat of formation + Delta-G solvation = 21.512163 kcal Electronic energy + Delta-G solvation = -31418.410222 eV Core-core repulsion = 27130.194207 eV Total energy + Delta-G solvation = -4288.216015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.094 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.54540 -39.95434 -38.69478 -37.93531 -37.09808 -36.41386 -34.09300 -32.72546 -32.22129 -31.20379 -31.09598 -30.22821 -28.16333 -26.50424 -25.42811 -23.90434 -23.54441 -21.97340 -21.55981 -21.03489 -19.84428 -18.60562 -18.13877 -17.88442 -17.20662 -16.44802 -15.81322 -15.78534 -15.60663 -15.27523 -15.19050 -14.68338 -14.49616 -14.29976 -14.09562 -14.02125 -13.79772 -13.68381 -13.12251 -12.87318 -12.76577 -12.60130 -12.50796 -12.17224 -11.67306 -11.59163 -11.47867 -11.36365 -11.25408 -11.16154 -10.80667 -10.50744 -9.98694 -9.82914 -9.54937 -9.25391 -9.15709 -9.11334 -8.96059 -8.42239 -8.07309 -7.44625 -6.48038 -4.99022 -0.16967 0.80447 0.99491 1.38636 1.85797 2.08297 2.87241 3.01489 3.07694 3.09802 3.12876 3.63876 3.66522 3.77121 3.96112 4.12968 4.26042 4.46203 4.53475 4.75792 4.81960 4.89698 4.94181 5.04963 5.12028 5.19715 5.25746 5.35476 5.46548 5.47874 5.60763 5.71818 5.78764 5.86453 6.08368 6.11618 6.18634 6.24090 6.39288 6.46614 6.49350 6.64124 6.90738 7.12652 7.15931 7.31488 7.44461 7.51356 7.91259 8.30884 8.69718 8.92081 10.21535 10.43011 Molecular weight = 360.09amu Principal moments of inertia in cm(-1) A = 0.008815 B = 0.004528 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.637287 B = 6182.531771 C = 8916.491051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.087 3.913 3 Si 0.920 3.080 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.528 4.528 8 H 0.077 0.923 9 C 0.554 3.446 10 O -0.551 6.551 11 N -0.566 5.566 12 N -0.287 5.287 13 C 0.277 3.723 14 C -0.289 4.289 15 C 0.054 3.946 16 C -0.128 4.128 17 C -0.082 4.082 18 C -0.146 4.146 19 C -0.041 4.041 20 C -0.148 4.148 21 C 0.558 3.442 22 O -0.481 6.481 23 C 0.474 3.526 24 O -0.434 6.434 25 C -0.149 4.149 26 C -0.055 4.055 27 C -0.112 4.112 28 C -0.093 4.093 29 C -0.069 4.069 30 C -0.047 4.047 31 H 0.275 0.725 32 H 0.404 0.596 33 H 0.139 0.861 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.234 -12.736 6.419 15.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.135 4.135 3 Si 0.743 3.257 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.095 0.905 9 C 0.360 3.640 10 O -0.428 6.428 11 N -0.322 5.322 12 N -0.084 5.084 13 C 0.166 3.834 14 C -0.297 4.297 15 C 0.053 3.947 16 C -0.146 4.146 17 C -0.100 4.100 18 C -0.164 4.164 19 C -0.060 4.060 20 C -0.153 4.153 21 C 0.351 3.649 22 O -0.353 6.353 23 C 0.352 3.648 24 O -0.309 6.309 25 C -0.151 4.151 26 C -0.073 4.073 27 C -0.130 4.130 28 C -0.111 4.111 29 C -0.087 4.087 30 C -0.049 4.049 31 H 0.086 0.914 32 H 0.244 0.756 33 H 0.156 0.844 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.927 -12.638 5.874 14.479 hybrid contribution 0.870 1.072 -0.088 1.383 sum 4.797 -11.566 5.786 13.794 Atomic orbital electron populations 1.69990 1.07212 1.28261 1.33042 1.25730 0.94795 1.00484 0.92465 0.86226 0.79681 0.80050 0.79707 1.18948 1.20295 1.18957 1.20557 0.93752 0.87199 1.55078 0.90482 1.18952 0.87983 0.80425 0.76676 1.90681 1.13761 1.84332 1.53986 1.47080 1.06749 0.93132 1.85286 1.43873 1.43906 1.13303 1.07297 1.20128 0.89314 0.88681 0.85304 1.20825 1.13507 0.99086 0.96322 1.18232 0.93501 0.93427 0.89536 1.21156 0.98592 0.95624 0.99228 1.21282 0.97121 0.99208 0.92403 1.21093 1.01356 0.95231 0.98708 1.21007 0.93157 0.95103 0.96745 1.19668 1.05046 0.95190 0.95377 1.18221 0.79108 0.85793 0.81733 1.90884 1.57821 1.54877 1.31710 1.19940 0.75989 0.83314 0.85580 1.90520 1.41402 1.22201 1.76728 1.20833 1.02213 0.97085 0.94971 1.20847 0.95124 0.98253 0.93086 1.21398 0.97735 0.93586 1.00251 1.21411 0.98513 0.98460 0.92697 1.21354 0.94522 0.96544 0.96266 1.19012 0.99459 0.96415 0.89965 0.91393 0.75595 0.84368 0.85431 0.85288 0.84400 0.84530 0.84606 0.84377 0.83701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.69 11.83 55.55 0.66 -21.04 16 2 C 0.09 2.27 5.50 -17.36 -0.10 2.18 16 3 Si 0.92 18.73 29.56 -169.99 -5.02 13.71 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.53 -13.69 9.54 -35.63 -0.34 -14.03 16 8 H 0.08 1.75 7.85 -52.49 -0.41 1.33 16 9 C 0.55 15.01 7.41 -12.99 -0.10 14.91 16 10 O -0.55 -17.55 15.09 5.20 0.08 -17.48 16 11 N -0.57 -12.45 3.99 30.19 0.12 -12.33 16 12 N -0.29 -6.12 2.90 -9.33 -0.03 -6.15 16 13 C 0.28 5.18 7.03 -81.27 -0.57 4.61 16 14 C -0.29 -5.09 6.33 -102.58 -0.65 -5.74 16 15 C 0.05 0.94 5.90 -104.79 -0.62 0.32 16 16 C -0.13 -1.84 9.78 -39.32 -0.38 -2.23 16 17 C -0.08 -0.99 10.01 -39.52 -0.40 -1.38 16 18 C -0.15 -1.82 10.01 -39.52 -0.40 -2.21 16 19 C -0.04 -0.65 9.65 -39.31 -0.38 -1.03 16 20 C -0.15 -2.77 5.89 -104.84 -0.62 -3.38 16 21 C 0.56 12.41 7.31 -13.02 -0.10 12.32 16 22 O -0.48 -12.15 16.45 5.16 0.08 -12.07 16 23 C 0.47 7.65 7.72 -31.52 -0.24 7.40 16 24 O -0.43 -7.22 16.91 5.39 0.09 -7.13 16 25 C -0.15 -2.18 6.31 -104.67 -0.66 -2.84 16 26 C -0.05 -0.62 10.10 -39.23 -0.40 -1.02 16 27 C -0.11 -1.07 10.05 -39.41 -0.40 -1.47 16 28 C -0.09 -1.01 10.04 -39.45 -0.40 -1.41 16 29 C -0.07 -0.98 9.79 -39.13 -0.38 -1.36 16 30 C -0.05 -0.76 6.18 -104.56 -0.65 -1.41 16 31 H 0.28 7.15 8.29 -40.82 -0.34 6.81 16 32 H 0.40 7.38 8.72 -182.59 -1.59 5.79 16 33 H 0.14 1.88 6.95 -52.49 -0.36 1.52 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 36 H 0.14 2.11 7.77 -52.49 -0.41 1.71 16 37 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 39 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.15 2.20 6.97 -52.48 -0.37 1.83 16 LS Contribution 359.43 15.07 5.42 5.42 Total: -1.00 -36.47 359.43 -10.75 -47.22 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -4.39 Total: 7.61 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -7.76 Total: 2.24 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.75 Total: -39.51 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: 0.25 Total: -36.68 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.47 -10.75 -47.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001547139526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.735 kcal (2) G-P(sol) polarization free energy of solvation -36.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds