Wall clock time and date at job start Tue Mar 31 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86797 * 119.99662 * 2 1 4 4 H 1.48502 * 109.47171 * 240.00405 * 3 2 1 5 5 H 1.48497 * 109.47343 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46990 * 120.00400 * 3 2 1 7 7 C 1.40049 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.46377 * 120.00215 * 359.97438 * 7 2 1 10 10 O 1.21685 * 119.99691 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99785 * 180.02562 * 9 7 2 12 12 N 1.40108 * 119.99733 * 180.02562 * 11 9 7 13 13 C 1.36705 * 118.60137 * 255.01893 * 12 11 9 14 14 C 1.38557 * 120.94619 * 179.97438 * 13 12 11 15 15 C 1.46829 * 119.48089 * 359.97438 * 14 13 12 16 16 C 1.39450 * 121.91361 * 180.02562 * 15 14 13 17 17 C 1.37727 * 119.54717 * 179.97438 * 16 15 14 18 18 C 1.38917 * 120.71398 * 359.95453 * 17 16 15 19 19 C 1.37722 * 120.73103 * 0.04182 * 18 17 16 20 20 C 1.39483 * 119.56307 * 359.97438 * 19 18 17 21 21 C 1.34407 * 118.59868 * 74.99479 * 12 11 9 22 22 O 1.21728 * 119.98836 * 0.02562 * 21 12 11 23 23 C 1.47400 * 108.50913 * 180.02562 * 14 13 12 24 24 O 1.21473 * 126.54581 * 179.97438 * 23 14 13 25 25 C 1.48726 * 106.90916 * 0.02562 * 23 14 13 26 26 C 1.38356 * 132.69113 * 179.97438 * 25 23 14 27 27 C 1.39075 * 119.85009 * 179.97438 * 26 25 23 28 28 C 1.37849 * 120.24908 * 0.02562 * 27 26 25 29 29 C 1.38967 * 120.38425 * 359.97078 * 28 27 26 30 30 C 1.38730 * 119.91403 * 0.04802 * 29 28 27 31 31 H 0.97000 * 120.00196 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00388 * 359.97438 * 11 9 7 33 33 H 1.07999 * 120.22403 * 359.97316 * 16 15 14 34 34 H 1.08000 * 119.64366 * 179.97438 * 17 16 15 35 35 H 1.08003 * 119.63482 * 180.02562 * 18 17 16 36 36 H 1.08000 * 120.21843 * 179.97438 * 19 18 17 37 37 H 1.07998 * 120.07534 * 0.02562 * 26 25 23 38 38 H 1.08003 * 119.87726 * 179.72545 * 27 26 25 39 39 H 1.07996 * 119.80213 * 179.97438 * 28 27 26 40 40 H 1.08004 * 120.04014 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0943 1.6965 -1.2126 5 1 1.2756 2.7464 0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9492 -3.6476 -0.0005 12 7 1.2487 -4.8610 -0.0011 13 6 1.1897 -5.5832 1.1582 14 6 0.5098 -6.7892 1.2125 15 6 -0.1571 -7.2977 0.0073 16 6 -0.8557 -8.5046 0.0050 17 6 -1.4637 -8.9352 -1.1534 18 6 -1.3888 -8.1801 -2.3170 19 6 -0.7043 -6.9852 -2.3377 20 6 -0.0804 -6.5293 -1.1765 21 6 0.6629 -5.2652 -1.1413 22 8 0.7479 -4.5813 -2.1446 23 6 0.6207 -7.3277 2.5802 24 8 0.1451 -8.3681 2.9887 25 6 1.4249 -6.3532 3.3648 26 6 1.8445 -6.3292 4.6830 27 6 2.6048 -5.2615 5.1480 28 6 2.9411 -4.2274 4.3008 29 6 2.5250 -4.2413 2.9750 30 6 1.7659 -5.3005 2.4992 31 1 -0.4850 0.8400 0.0004 32 1 2.9192 -3.6476 -0.0009 33 1 -0.9195 -9.0976 0.9054 34 1 -2.0048 -9.8699 -1.1570 35 1 -1.8724 -8.5342 -3.2154 36 1 -0.6511 -6.4050 -3.2471 37 1 1.5830 -7.1380 5.3491 38 1 2.9288 -5.2401 6.1781 39 1 3.5314 -3.4017 4.6697 40 1 2.7913 -3.4280 2.3161 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001547139526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:15 Heat of formation + Delta-G solvation = -2.009285 kcal Electronic energy + Delta-G solvation = -31419.430189 eV Core-core repulsion = 27130.194207 eV Total energy + Delta-G solvation = -4289.235981 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.094 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.93835 -41.27892 -40.08590 -39.17199 -38.87479 -37.98079 -35.64566 -34.73975 -33.56595 -32.47919 -32.12652 -31.75177 -29.34978 -28.46167 -26.71225 -25.26368 -24.75404 -23.18875 -22.84193 -22.61868 -21.21349 -20.21168 -19.51948 -19.40028 -18.80833 -17.77982 -17.56727 -17.03838 -16.89263 -16.77164 -16.46518 -16.00949 -15.79788 -15.75107 -15.43335 -15.23804 -14.99729 -14.90948 -14.73356 -14.65538 -14.19904 -13.95481 -13.80229 -13.38055 -13.11306 -13.06361 -12.81787 -12.77739 -12.76561 -12.40950 -12.32078 -12.12258 -11.62985 -11.10902 -11.03623 -10.93489 -10.38800 -10.30578 -10.22923 -10.16741 -10.07585 -8.79416 -8.45576 -7.08140 -1.40464 -0.44068 -0.13461 0.29056 0.51838 0.70813 1.39364 1.41684 1.47236 1.55958 1.85209 2.17565 2.26804 2.39657 2.54534 2.67783 2.82800 3.01701 3.23792 3.42909 3.59167 3.70367 3.73901 3.82175 4.08260 4.11597 4.15948 4.24390 4.25451 4.38817 4.47024 4.59616 4.64972 4.85458 4.95157 5.09826 5.16721 5.18067 5.22842 5.31378 5.32348 5.35404 5.43590 5.63810 5.72110 5.76383 5.81206 5.97409 6.19424 6.62171 6.67783 7.01678 8.18891 8.48666 Molecular weight = 360.09amu Principal moments of inertia in cm(-1) A = 0.008815 B = 0.004528 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.637287 B = 6182.531771 C = 8916.491051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.030 3.970 3 Si 1.009 2.991 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.240 1.240 7 C -0.548 4.548 8 H 0.106 0.894 9 C 0.544 3.456 10 O -0.612 6.612 11 N -0.556 5.556 12 N -0.298 5.298 13 C 0.244 3.756 14 C -0.288 4.288 15 C 0.031 3.969 16 C -0.129 4.129 17 C -0.061 4.061 18 C -0.124 4.124 19 C -0.059 4.059 20 C -0.176 4.176 21 C 0.541 3.459 22 O -0.538 6.538 23 C 0.478 3.522 24 O -0.439 6.439 25 C -0.166 4.166 26 C -0.043 4.043 27 C -0.090 4.090 28 C -0.085 4.085 29 C -0.087 4.087 30 C -0.076 4.076 31 H 0.279 0.721 32 H 0.419 0.581 33 H 0.150 0.850 34 H 0.178 0.822 35 H 0.173 0.827 36 H 0.131 0.869 37 H 0.167 0.833 38 H 0.186 0.814 39 H 0.170 0.830 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.330 -14.357 9.065 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.186 4.186 3 Si 0.827 3.173 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.163 1.163 7 C -0.586 4.586 8 H 0.124 0.876 9 C 0.352 3.648 10 O -0.494 6.494 11 N -0.311 5.311 12 N -0.095 5.095 13 C 0.135 3.865 14 C -0.296 4.296 15 C 0.030 3.970 16 C -0.147 4.147 17 C -0.078 4.078 18 C -0.142 4.142 19 C -0.078 4.078 20 C -0.181 4.181 21 C 0.338 3.662 22 O -0.415 6.415 23 C 0.357 3.643 24 O -0.314 6.314 25 C -0.167 4.167 26 C -0.060 4.060 27 C -0.107 4.107 28 C -0.102 4.102 29 C -0.105 4.105 30 C -0.077 4.077 31 H 0.089 0.911 32 H 0.261 0.739 33 H 0.167 0.833 34 H 0.195 0.805 35 H 0.190 0.810 36 H 0.149 0.851 37 H 0.184 0.816 38 H 0.203 0.797 39 H 0.188 0.812 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.089 -14.336 8.574 17.462 hybrid contribution 0.491 1.351 -0.837 1.663 sum 5.580 -12.985 7.737 16.112 Atomic orbital electron populations 1.70187 1.09906 1.29725 1.34691 1.27111 0.95563 1.05128 0.90817 0.84901 0.78058 0.73547 0.80821 1.18007 1.20105 1.16346 1.21187 0.95269 0.87385 1.54714 0.87627 1.19312 0.87414 0.82087 0.76017 1.90621 1.16244 1.85892 1.56667 1.46332 1.07155 0.93400 1.84173 1.43882 1.44515 1.12779 1.08360 1.20619 0.90976 0.89214 0.85673 1.21333 1.12111 0.98668 0.97471 1.18482 0.94839 0.94771 0.88942 1.21406 0.98113 0.94367 1.00847 1.21842 0.95058 1.00213 0.90722 1.21584 0.98972 0.93059 1.00574 1.21204 0.94123 0.96797 0.95682 1.19743 1.06617 0.94323 0.97420 1.19013 0.78984 0.86791 0.81390 1.90812 1.60452 1.56815 1.33441 1.19966 0.75919 0.83394 0.85032 1.90498 1.41854 1.22429 1.76652 1.20785 1.03516 0.96172 0.96263 1.21332 0.93682 0.99378 0.91652 1.21947 0.95239 0.91530 1.01994 1.21818 0.97671 0.99788 0.90947 1.21434 0.95318 0.95754 0.98011 1.19107 1.01428 0.98238 0.88967 0.91077 0.73869 0.83274 0.80468 0.80977 0.85080 0.81563 0.79683 0.81211 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.33 11.83 21.84 0.26 -49.07 16 2 C 0.03 1.63 5.50 85.30 0.47 2.09 16 3 Si 1.01 38.68 29.56 68.60 2.03 40.71 16 4 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 5 H -0.28 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.24 -8.21 7.11 99.48 0.71 -7.50 16 7 C -0.55 -29.70 9.54 24.83 0.24 -29.46 16 8 H 0.11 4.88 7.85 -2.91 -0.02 4.85 16 9 C 0.54 31.84 7.41 86.36 0.64 32.48 16 10 O -0.61 -42.37 15.09 -4.30 -0.06 -42.44 16 11 N -0.56 -26.75 3.99 -176.63 -0.70 -27.46 16 12 N -0.30 -14.00 2.90 -301.85 -0.88 -14.88 16 13 C 0.24 9.91 7.03 41.25 0.29 10.20 16 14 C -0.29 -10.74 6.33 -18.54 -0.12 -10.86 16 15 C 0.03 1.11 5.90 -19.97 -0.12 1.00 16 16 C -0.13 -3.57 9.78 22.44 0.22 -3.35 16 17 C -0.06 -1.25 10.01 22.31 0.22 -1.03 16 18 C -0.12 -2.80 10.01 22.31 0.22 -2.58 16 19 C -0.06 -1.94 9.65 22.45 0.22 -1.72 16 20 C -0.18 -7.11 5.89 -20.01 -0.12 -7.23 16 21 C 0.54 26.73 7.31 86.51 0.63 27.37 16 22 O -0.54 -30.29 16.45 -4.44 -0.07 -30.36 16 23 C 0.48 15.59 7.72 27.49 0.21 15.80 16 24 O -0.44 -14.25 16.91 -3.63 -0.06 -14.31 16 25 C -0.17 -4.76 6.31 -19.90 -0.13 -4.89 16 26 C -0.04 -0.83 10.10 22.50 0.23 -0.60 16 27 C -0.09 -1.32 10.05 22.38 0.22 -1.10 16 28 C -0.08 -1.62 10.04 22.35 0.22 -1.40 16 29 C -0.09 -2.54 9.79 22.56 0.22 -2.32 16 30 C -0.08 -2.57 6.18 -19.82 -0.12 -2.69 16 31 H 0.28 15.28 8.29 -92.71 -0.77 14.52 16 32 H 0.42 16.89 8.72 -213.31 -1.86 15.03 16 33 H 0.15 3.78 6.95 -2.91 -0.02 3.76 16 34 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.13 4.37 7.77 -2.91 -0.02 4.35 16 37 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.19 1.04 8.06 -2.91 -0.02 1.01 16 39 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 40 H 0.13 4.08 6.97 -2.91 -0.02 4.06 16 Total: -1.00 -91.06 359.43 3.45 -87.61 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -0.71 Total: 30.49 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: 3.66 Total: 19.71 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -1.32 Total: -91.41 kcal Atomic # 8 Polarization: -86.91 SS G_CDS: -0.20 Total: -87.10 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -91.06 3.45 -87.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001547139526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.601 kcal (2) G-P(sol) polarization free energy of solvation -91.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds