Wall clock time and date at job start Tue Mar 31 2020 05:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47269 * 311.18292 * 3 2 1 5 5 H 1.09007 * 109.47377 * 305.00228 * 4 3 2 6 6 C 1.53001 * 109.47256 * 185.00425 * 4 3 2 7 7 C 1.52995 * 109.47326 * 65.00216 * 6 4 3 8 8 H 1.09006 * 109.46909 * 305.00071 * 7 6 4 9 9 C 1.50705 * 109.47296 * 64.99792 * 7 6 4 10 10 H 1.07994 * 119.99793 * 240.00152 * 9 7 6 11 11 C 1.37873 * 119.99490 * 60.00234 * 9 7 6 12 12 N 1.31512 * 120.00260 * 0.02562 * 11 9 7 13 13 Si 1.86806 * 119.99661 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47031 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46830 * 120.00154 * 13 11 9 16 16 H 1.48500 * 109.47176 * 239.99925 * 13 11 9 17 17 C 1.50698 * 109.47413 * 185.00189 * 7 6 4 18 18 O 1.21252 * 119.99677 * 334.99865 * 17 7 6 19 19 C 1.47166 * 120.00411 * 154.99930 * 17 7 6 20 20 C 1.39847 * 120.17203 * 180.02562 * 19 17 7 21 21 C 1.37886 * 119.82116 * 179.97438 * 20 19 17 22 22 C 1.38406 * 120.17708 * 359.97438 * 21 20 19 23 23 C 1.38403 * 120.34455 * 0.28152 * 22 21 20 24 24 C 1.37892 * 120.17250 * 359.47904 * 23 22 21 25 25 C 1.50704 * 109.47053 * 65.00343 * 4 3 2 26 26 O 1.21247 * 119.99754 * 95.00046 * 25 4 3 27 27 C 1.47163 * 119.99926 * 275.00158 * 25 4 3 28 28 C 1.39855 * 120.17289 * 359.71684 * 27 25 4 29 29 C 1.37889 * 119.82574 * 179.80740 * 28 27 25 30 30 C 1.38406 * 120.17087 * 0.45390 * 29 28 27 31 31 C 1.38408 * 120.34582 * 359.78296 * 30 29 28 32 32 C 1.37881 * 120.17243 * 359.97438 * 31 30 29 33 33 H 1.09007 * 109.46996 * 191.18424 * 3 2 1 34 34 H 1.09000 * 109.47323 * 71.18874 * 3 2 1 35 35 H 1.08995 * 109.47026 * 304.99812 * 6 4 3 36 36 H 1.09003 * 109.46978 * 185.00225 * 6 4 3 37 37 H 0.97007 * 119.99879 * 180.02562 * 12 11 9 38 38 H 1.07992 * 120.09103 * 359.94867 * 20 19 17 39 39 H 1.08001 * 119.91179 * 179.97438 * 21 20 19 40 40 H 1.08002 * 119.82516 * 179.97438 * 22 21 20 41 41 H 1.08005 * 119.91196 * 179.72500 * 23 22 21 42 42 H 1.07999 * 120.08484 * 180.23018 * 24 23 22 43 43 H 1.08002 * 120.08756 * 0.02869 * 28 27 25 44 44 H 1.08003 * 119.91571 * 180.20858 * 29 28 27 45 45 H 1.08002 * 119.82352 * 179.75758 * 30 29 28 46 46 H 1.07998 * 119.90816 * 179.97438 * 31 30 29 47 47 H 1.08009 * 120.08222 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.9489 1.0856 5 1 2.6837 -0.6705 2.0457 6 6 4.6432 -0.8547 1.1698 7 6 5.0427 0.5463 1.6372 8 1 4.5970 1.2903 0.9769 9 6 4.5513 0.7654 3.0449 10 1 3.8619 1.5691 3.2572 11 6 4.9820 -0.0603 4.0616 12 7 5.8218 -1.0387 3.8031 13 14 4.3735 0.2118 5.8067 14 1 3.4436 1.3692 5.8319 15 1 3.6628 -1.0039 6.2783 16 1 5.5299 0.4857 6.6972 17 6 6.5434 0.6786 1.6026 18 8 7.2412 -0.3091 1.6912 19 6 7.1621 2.0064 1.4614 20 6 8.5544 2.1331 1.4284 21 6 9.1264 3.3807 1.2954 22 6 8.3265 4.5056 1.1941 23 6 6.9479 4.3889 1.2312 24 6 6.3606 3.1478 1.3589 25 6 2.7205 -2.3619 0.7447 26 8 3.4952 -3.0844 0.1549 27 6 1.3915 -2.8648 1.1277 28 6 0.4973 -2.0364 1.8134 29 6 -0.7476 -2.5137 2.1653 30 6 -1.1095 -3.8119 1.8500 31 6 -0.2283 -4.6394 1.1759 32 6 1.0182 -4.1752 0.8128 33 1 2.9709 1.0090 0.1993 34 1 2.9715 -0.3305 -0.9728 35 1 5.0739 -1.0465 0.1871 36 1 5.0142 -1.5941 1.8797 37 1 6.1245 -1.6198 4.5184 38 1 9.1800 1.2564 1.5074 39 1 10.2015 3.4803 1.2701 40 1 8.7805 5.4801 1.0905 41 1 6.3304 5.2718 1.1561 42 1 5.2846 3.0580 1.3840 43 1 0.7797 -1.0244 2.0634 44 1 -1.4406 -1.8741 2.6918 45 1 -2.0846 -4.1811 2.1318 46 1 -0.5179 -5.6512 0.9338 47 1 1.7049 -4.8223 0.2872 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002271862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:50 Heat of formation + Delta-G solvation = 6.387950 kcal Electronic energy + Delta-G solvation = -31807.273871 eV Core-core repulsion = 27692.349548 eV Total energy + Delta-G solvation = -4114.924323 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.146 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.10443 -39.12098 -38.06386 -37.25510 -36.61625 -34.74027 -32.73499 -31.24187 -30.94093 -30.84596 -30.45408 -29.35713 -26.58118 -24.82908 -24.11277 -22.89681 -22.35474 -21.91431 -20.66808 -19.03520 -18.82633 -17.48178 -17.17966 -16.77003 -15.98568 -15.72564 -15.39831 -15.05931 -14.82811 -14.75843 -14.54271 -14.26199 -13.97202 -13.74846 -13.55463 -13.44345 -13.31086 -13.05829 -13.02826 -12.85473 -12.56761 -12.45802 -12.37922 -11.75183 -11.65819 -11.50578 -11.45483 -11.22990 -11.17985 -11.01372 -10.98932 -10.71676 -10.64153 -10.47150 -10.08070 -9.65451 -9.32764 -9.04739 -8.88657 -8.84036 -8.68368 -8.55990 -8.37369 -8.09778 -6.12182 -4.30360 0.84689 1.41634 1.46481 1.81150 2.66460 3.00333 3.01419 3.18871 3.29677 3.30114 3.58753 3.94973 4.22627 4.26268 4.30493 4.53477 4.88149 4.98547 5.05314 5.09390 5.21430 5.25963 5.30275 5.33071 5.37936 5.46970 5.48607 5.51936 5.59422 5.84277 5.88707 5.90730 5.96897 6.03227 6.12545 6.29616 6.34604 6.39473 6.42329 6.49394 6.54314 6.56995 6.74408 6.81108 6.90405 6.95656 6.96901 7.03468 7.25123 7.38082 7.59919 7.76257 7.88166 7.93642 8.10553 8.67535 9.08457 9.36831 10.83925 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.011743 B = 0.003207 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.815989 B = 8728.805542 C = 9357.281840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.206 3.794 3 C -0.022 4.022 4 C -0.112 4.112 5 H 0.117 0.883 6 C -0.089 4.089 7 C 0.012 3.988 8 H 0.045 0.955 9 C -0.526 4.526 10 H 0.067 0.933 11 C 0.069 3.931 12 N -0.843 5.843 13 Si 0.881 3.119 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.284 1.284 17 C 0.395 3.605 18 O -0.436 6.436 19 C -0.134 4.134 20 C -0.080 4.080 21 C -0.140 4.140 22 C -0.114 4.114 23 C -0.140 4.140 24 C -0.070 4.070 25 C 0.398 3.602 26 O -0.445 6.445 27 C -0.166 4.166 28 C -0.063 4.063 29 C -0.128 4.128 30 C -0.095 4.095 31 C -0.139 4.139 32 C -0.066 4.066 33 H 0.128 0.872 34 H 0.106 0.894 35 H 0.038 0.962 36 H 0.114 0.886 37 H 0.265 0.735 38 H 0.126 0.874 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.136 0.864 43 H 0.131 0.869 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.128 3.314 -5.535 8.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.111 4.111 3 C -0.062 4.062 4 C -0.133 4.133 5 H 0.135 0.865 6 C -0.127 4.127 7 C -0.007 4.007 8 H 0.063 0.937 9 C -0.563 4.563 10 H 0.085 0.915 11 C -0.138 4.138 12 N -0.477 5.477 13 Si 0.708 3.292 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.210 1.210 17 C 0.270 3.730 18 O -0.309 6.309 19 C -0.135 4.135 20 C -0.098 4.098 21 C -0.158 4.158 22 C -0.132 4.132 23 C -0.158 4.158 24 C -0.088 4.088 25 C 0.275 3.725 26 O -0.319 6.319 27 C -0.166 4.166 28 C -0.082 4.082 29 C -0.146 4.146 30 C -0.113 4.113 31 C -0.157 4.157 32 C -0.084 4.084 33 H 0.146 0.854 34 H 0.124 0.876 35 H 0.057 0.943 36 H 0.132 0.868 37 H 0.075 0.925 38 H 0.144 0.856 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.153 0.847 43 H 0.149 0.851 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.923 2.231 -5.726 8.535 hybrid contribution 0.124 0.335 1.393 1.438 sum -5.799 2.566 -4.333 7.681 Atomic orbital electron populations 1.81174 1.12863 1.08979 1.08712 1.29402 0.95608 0.93019 0.93054 1.19484 0.81032 1.04084 1.01577 1.21623 1.01452 0.90423 0.99758 0.86520 1.21385 0.88391 1.02034 1.00879 1.19184 0.89996 0.93976 0.97539 0.93721 1.20779 1.28612 1.16146 0.90798 0.91489 1.25080 0.94647 0.95096 0.98939 1.70011 1.29250 1.16104 1.32363 0.86696 0.78919 0.78387 0.85200 1.19456 1.20795 1.20954 1.22977 0.93071 0.85555 0.71365 1.90403 1.65852 1.40111 1.34564 1.21215 0.93778 0.97292 1.01218 1.21452 0.94779 0.97478 0.96104 1.21025 0.99447 0.92762 1.02542 1.21195 0.94069 0.98097 0.99867 1.21094 0.94794 0.97552 1.02377 1.21582 1.00621 0.91395 0.95224 1.22723 0.84695 0.90084 0.74988 1.90474 1.51588 1.58684 1.31140 1.20718 0.96968 0.95588 1.03374 1.21633 0.93054 0.99347 0.94125 1.21078 0.96656 0.95925 1.00984 1.21345 0.99204 0.93957 0.96809 1.21082 0.94212 1.00030 1.00367 1.21413 0.95982 0.94556 0.96448 0.85429 0.87574 0.94336 0.86841 0.92503 0.85632 0.86532 0.86714 0.86315 0.84663 0.85107 0.85789 0.86010 0.85797 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.85 17.04 42.15 0.72 -6.13 16 2 C 0.21 2.89 12.07 -20.76 -0.25 2.64 16 3 C -0.02 -0.28 5.05 -29.52 -0.15 -0.43 16 4 C -0.11 -1.88 1.73 -91.77 -0.16 -2.04 16 5 H 0.12 2.04 5.82 -51.93 -0.30 1.74 16 6 C -0.09 -1.80 2.89 -26.73 -0.08 -1.87 16 7 C 0.01 0.24 1.60 -92.92 -0.15 0.10 16 8 H 0.04 0.74 4.85 -51.93 -0.25 0.49 16 9 C -0.53 -11.64 7.60 -34.44 -0.26 -11.90 16 10 H 0.07 1.43 7.81 -52.49 -0.41 1.02 16 11 C 0.07 1.68 5.13 -17.82 -0.09 1.59 16 12 N -0.84 -21.93 9.30 55.43 0.52 -21.42 16 13 Si 0.88 19.32 29.54 -169.99 -5.02 14.30 16 14 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 17 C 0.39 8.61 5.58 -30.69 -0.17 8.44 16 18 O -0.44 -10.96 14.64 5.58 0.08 -10.88 16 19 C -0.13 -2.53 5.87 -105.07 -0.62 -3.15 16 20 C -0.08 -1.40 9.60 -39.11 -0.38 -1.78 16 21 C -0.14 -2.01 10.03 -39.65 -0.40 -2.41 16 22 C -0.11 -1.50 10.04 -39.46 -0.40 -1.90 16 23 C -0.14 -1.91 10.03 -39.65 -0.40 -2.31 16 24 C -0.07 -1.12 9.37 -39.10 -0.37 -1.49 16 25 C 0.40 7.03 5.98 -30.68 -0.18 6.84 16 26 O -0.44 -8.87 16.19 5.59 0.09 -8.78 16 27 C -0.17 -2.68 5.53 -105.07 -0.58 -3.26 16 28 C -0.06 -0.96 6.81 -39.10 -0.27 -1.23 16 29 C -0.13 -1.72 10.03 -39.65 -0.40 -2.12 16 30 C -0.10 -1.14 10.04 -39.46 -0.40 -1.54 16 31 C -0.14 -1.73 10.03 -39.65 -0.40 -2.13 16 32 C -0.07 -0.97 9.60 -39.11 -0.38 -1.35 16 33 H 0.13 1.44 6.25 -51.92 -0.32 1.11 16 34 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.04 0.76 8.03 -51.93 -0.42 0.35 16 36 H 0.11 2.79 5.84 -51.93 -0.30 2.49 16 37 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.13 2.25 7.65 -52.49 -0.40 1.85 16 39 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 42 H 0.14 2.00 6.47 -52.49 -0.34 1.66 16 43 H 0.13 1.98 5.02 -52.49 -0.26 1.71 16 44 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 45 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 46 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 47 H 0.13 1.87 7.65 -52.48 -0.40 1.47 16 LS Contribution 392.82 15.07 5.92 5.92 Total: -1.00 -29.69 392.82 -9.66 -39.35 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.51 Total: 8.93 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -6.46 Total: -21.30 kcal Atomic # 7 Polarization: -28.79 SS G_CDS: 1.23 Total: -27.55 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: 0.17 Total: -19.66 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.69 -9.66 -39.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002271862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.742 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds